Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS06420

Experiment: Motility_outer_sample_with_outgrowth

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntQEN71_RS06415 and QEN71_RS06420 are separated by 398 nucleotidesQEN71_RS06420 and QEN71_RS06425 are separated by 189 nucleotides QEN71_RS06415: QEN71_RS06415 - type I methionyl aminopeptidase, at 1,426,061 to 1,426,873 _RS06415 QEN71_RS06420: QEN71_RS06420 - 30S ribosomal protein S2, at 1,427,272 to 1,428,024 _RS06420 QEN71_RS06425: QEN71_RS06425 - translation elongation factor Ts, at 1,428,214 to 1,429,095 _RS06425 Position (kb) 1427 1428 1429Strain fitness (log2 ratio) -3 -2 -1 0 1at 1426.305 kb on + strand, within QEN71_RS06415at 1426.305 kb on + strand, within QEN71_RS06415at 1426.305 kb on + strand, within QEN71_RS06415at 1426.305 kb on + strand, within QEN71_RS06415at 1426.306 kb on - strand, within QEN71_RS06415at 1426.306 kb on - strand, within QEN71_RS06415at 1426.306 kb on - strand, within QEN71_RS06415at 1426.306 kb on - strand, within QEN71_RS06415at 1426.306 kb on - strand, within QEN71_RS06415at 1426.306 kb on - strand, within QEN71_RS06415at 1426.359 kb on + strand, within QEN71_RS06415at 1426.359 kb on + strand, within QEN71_RS06415at 1426.359 kb on + strand, within QEN71_RS06415at 1426.360 kb on - strand, within QEN71_RS06415at 1426.378 kb on - strand, within QEN71_RS06415at 1426.473 kb on + strand, within QEN71_RS06415at 1426.473 kb on + strand, within QEN71_RS06415at 1426.473 kb on + strand, within QEN71_RS06415at 1426.473 kb on + strand, within QEN71_RS06415at 1426.473 kb on + strand, within QEN71_RS06415at 1426.473 kb on + strand, within QEN71_RS06415at 1426.473 kb on + strand, within QEN71_RS06415at 1426.473 kb on + strand, within QEN71_RS06415at 1426.473 kb on + strand, within QEN71_RS06415at 1426.473 kb on + strand, within QEN71_RS06415at 1426.473 kb on + strand, within QEN71_RS06415at 1426.473 kb on + strand, within QEN71_RS06415at 1426.473 kb on + strand, within QEN71_RS06415at 1426.473 kb on + strand, within QEN71_RS06415at 1426.473 kb on + strand, within QEN71_RS06415at 1426.473 kb on + strand, within QEN71_RS06415at 1426.473 kb on + strand, within QEN71_RS06415at 1426.474 kb on - strand, within QEN71_RS06415at 1426.474 kb on - strand, within QEN71_RS06415at 1426.474 kb on - strand, within QEN71_RS06415at 1426.474 kb on - strand, within QEN71_RS06415at 1426.474 kb on - strand, within QEN71_RS06415at 1426.474 kb on - strand, within QEN71_RS06415at 1426.474 kb on - strand, within QEN71_RS06415at 1426.474 kb on - strand, within QEN71_RS06415at 1426.474 kb on - strand, within QEN71_RS06415at 1426.474 kb on - strand, within QEN71_RS06415at 1426.474 kb on - strand, within QEN71_RS06415at 1426.474 kb on - strand, within QEN71_RS06415at 1426.474 kb on - strand, within QEN71_RS06415at 1426.474 kb on - strand, within QEN71_RS06415at 1426.474 kb on - strand, within QEN71_RS06415at 1426.474 kb on - strand, within QEN71_RS06415at 1426.474 kb on - strand, within QEN71_RS06415at 1426.474 kb on - strand, within QEN71_RS06415at 1426.474 kb on - strand, within QEN71_RS06415at 1426.474 kb on - strand, within QEN71_RS06415at 1426.474 kb on - strand, within QEN71_RS06415at 1426.474 kb on - strand, within QEN71_RS06415at 1426.474 kb on - strand, within QEN71_RS06415at 1426.474 kb on - strand, within QEN71_RS06415at 1426.545 kb on + strand, within QEN71_RS06415at 1426.545 kb on + strand, within QEN71_RS06415at 1426.546 kb on - strand, within QEN71_RS06415at 1426.546 kb on - strand, within QEN71_RS06415at 1426.546 kb on - strand, within QEN71_RS06415at 1426.546 kb on - strand, within QEN71_RS06415at 1426.548 kb on + strand, within QEN71_RS06415at 1426.548 kb on + strand, within QEN71_RS06415at 1426.548 kb on + strand, within QEN71_RS06415at 1426.548 kb on + strand, within QEN71_RS06415at 1426.548 kb on + strand, within QEN71_RS06415at 1426.549 kb on - strand, within QEN71_RS06415at 1426.549 kb on - strand, within QEN71_RS06415at 1426.549 kb on - strand, within QEN71_RS06415at 1426.549 kb on - strand, within QEN71_RS06415at 1426.549 kb on - strand, within QEN71_RS06415at 1426.618 kb on + strand, within QEN71_RS06415at 1426.618 kb on + strand, within QEN71_RS06415at 1426.619 kb on - strand, within QEN71_RS06415at 1426.689 kb on + strand, within QEN71_RS06415at 1426.689 kb on + strand, within QEN71_RS06415at 1426.689 kb on + strand, within QEN71_RS06415at 1426.689 kb on + strand, within QEN71_RS06415at 1426.689 kb on + strand, within QEN71_RS06415at 1426.690 kb on - strand, within QEN71_RS06415at 1426.718 kb on + strand, within QEN71_RS06415at 1426.718 kb on + strand, within QEN71_RS06415at 1426.718 kb on + strand, within QEN71_RS06415at 1426.718 kb on + strand, within QEN71_RS06415at 1426.719 kb on - strand, within QEN71_RS06415at 1426.719 kb on - strand, within QEN71_RS06415at 1426.719 kb on - strand, within QEN71_RS06415at 1426.719 kb on - strand, within QEN71_RS06415at 1426.719 kb on - strand, within QEN71_RS06415at 1426.719 kb on - strand, within QEN71_RS06415at 1426.719 kb on - strand, within QEN71_RS06415at 1426.719 kb on - strand, within QEN71_RS06415at 1426.719 kb on - strand, within QEN71_RS06415at 1426.731 kb on + strand, within QEN71_RS06415at 1426.731 kb on + strand, within QEN71_RS06415at 1426.731 kb on + strand, within QEN71_RS06415at 1426.731 kb on + strand, within QEN71_RS06415at 1426.731 kb on + strand, within QEN71_RS06415at 1426.731 kb on + strand, within QEN71_RS06415at 1426.731 kb on + strand, within QEN71_RS06415at 1426.731 kb on + strand, within QEN71_RS06415at 1426.731 kb on + strand, within QEN71_RS06415at 1426.731 kb on + strand, within QEN71_RS06415at 1426.731 kb on + strand, within QEN71_RS06415at 1426.731 kb on + strand, within QEN71_RS06415at 1426.732 kb on - strand, within QEN71_RS06415at 1426.732 kb on - strand, within QEN71_RS06415at 1426.732 kb on - strand, within QEN71_RS06415at 1426.732 kb on - strand, within QEN71_RS06415at 1426.732 kb on - strand, within QEN71_RS06415at 1426.732 kb on - strand, within QEN71_RS06415at 1426.732 kb on - strand, within QEN71_RS06415at 1426.732 kb on - strand, within QEN71_RS06415at 1426.732 kb on - strand, within QEN71_RS06415at 1426.732 kb on - strand, within QEN71_RS06415at 1426.732 kb on - strand, within QEN71_RS06415at 1426.732 kb on - strand, within QEN71_RS06415at 1426.732 kb on - strand, within QEN71_RS06415at 1426.794 kb on + strandat 1426.794 kb on + strandat 1426.794 kb on + strandat 1426.794 kb on + strandat 1426.794 kb on + strandat 1426.794 kb on + strandat 1426.794 kb on + strandat 1426.795 kb on - strandat 1426.795 kb on - strandat 1426.795 kb on - strandat 1426.795 kb on - strandat 1426.795 kb on - strandat 1426.864 kb on + strandat 1426.864 kb on + strandat 1426.864 kb on + strandat 1426.864 kb on + strandat 1426.864 kb on + strandat 1426.864 kb on + strandat 1426.865 kb on - strandat 1426.865 kb on - strandat 1426.865 kb on - strandat 1426.865 kb on - strandat 1426.865 kb on - strandat 1426.865 kb on - strandat 1426.867 kb on + strandat 1426.867 kb on + strandat 1426.867 kb on + strandat 1426.867 kb on + strandat 1426.868 kb on - strandat 1426.897 kb on - strandat 1426.897 kb on - strandat 1426.897 kb on - strandat 1426.917 kb on + strandat 1426.917 kb on + strandat 1426.917 kb on + strandat 1426.917 kb on + strandat 1426.918 kb on - strandat 1426.918 kb on - strandat 1427.077 kb on + strandat 1427.077 kb on + strandat 1427.078 kb on - strandat 1427.078 kb on - strandat 1428.022 kb on + strandat 1428.022 kb on + strandat 1428.022 kb on + strandat 1428.022 kb on + strandat 1428.022 kb on + strandat 1428.058 kb on + strandat 1428.058 kb on + strandat 1428.058 kb on + strandat 1428.058 kb on + strandat 1428.058 kb on + strandat 1428.058 kb on + strandat 1428.058 kb on + strandat 1428.060 kb on + strandat 1428.075 kb on + strandat 1428.130 kb on + strandat 1428.130 kb on + strandat 1428.130 kb on + strandat 1428.130 kb on + strandat 1428.130 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Motility_outer_sample_with_outgrowth
remove
1,426,305 + QEN71_RS06415 0.30 -2.0
1,426,305 + QEN71_RS06415 0.30 -0.8
1,426,305 + QEN71_RS06415 0.30 -1.0
1,426,305 + QEN71_RS06415 0.30 -1.8
1,426,306 - QEN71_RS06415 0.30 +0.2
1,426,306 - QEN71_RS06415 0.30 -0.1
1,426,306 - QEN71_RS06415 0.30 +0.4
1,426,306 - QEN71_RS06415 0.30 +0.2
1,426,306 - QEN71_RS06415 0.30 -0.8
1,426,306 - QEN71_RS06415 0.30 -0.5
1,426,359 + QEN71_RS06415 0.37 -2.1
1,426,359 + QEN71_RS06415 0.37 +0.2
1,426,359 + QEN71_RS06415 0.37 +0.2
1,426,360 - QEN71_RS06415 0.37 -3.1
1,426,378 - QEN71_RS06415 0.39 -1.9
1,426,473 + QEN71_RS06415 0.51 -2.1
1,426,473 + QEN71_RS06415 0.51 +0.0
1,426,473 + QEN71_RS06415 0.51 -0.1
1,426,473 + QEN71_RS06415 0.51 -0.6
1,426,473 + QEN71_RS06415 0.51 -0.1
1,426,473 + QEN71_RS06415 0.51 -0.1
1,426,473 + QEN71_RS06415 0.51 -0.8
1,426,473 + QEN71_RS06415 0.51 -1.3
1,426,473 + QEN71_RS06415 0.51 -1.0
1,426,473 + QEN71_RS06415 0.51 -0.7
1,426,473 + QEN71_RS06415 0.51 -1.4
1,426,473 + QEN71_RS06415 0.51 -0.5
1,426,473 + QEN71_RS06415 0.51 +0.2
1,426,473 + QEN71_RS06415 0.51 -0.4
1,426,473 + QEN71_RS06415 0.51 -2.1
1,426,473 + QEN71_RS06415 0.51 -3.2
1,426,473 + QEN71_RS06415 0.51 +0.2
1,426,474 - QEN71_RS06415 0.51 -2.1
1,426,474 - QEN71_RS06415 0.51 -2.5
1,426,474 - QEN71_RS06415 0.51 -2.0
1,426,474 - QEN71_RS06415 0.51 -2.1
1,426,474 - QEN71_RS06415 0.51 +0.3
1,426,474 - QEN71_RS06415 0.51 -1.5
1,426,474 - QEN71_RS06415 0.51 -1.1
1,426,474 - QEN71_RS06415 0.51 -1.9
1,426,474 - QEN71_RS06415 0.51 -0.9
1,426,474 - QEN71_RS06415 0.51 -1.4
1,426,474 - QEN71_RS06415 0.51 -2.2
1,426,474 - QEN71_RS06415 0.51 -1.3
1,426,474 - QEN71_RS06415 0.51 -0.4
1,426,474 - QEN71_RS06415 0.51 -1.6
1,426,474 - QEN71_RS06415 0.51 -1.1
1,426,474 - QEN71_RS06415 0.51 +1.6
1,426,474 - QEN71_RS06415 0.51 -1.5
1,426,474 - QEN71_RS06415 0.51 -1.4
1,426,474 - QEN71_RS06415 0.51 -0.7
1,426,474 - QEN71_RS06415 0.51 -1.4
1,426,474 - QEN71_RS06415 0.51 -1.1
1,426,474 - QEN71_RS06415 0.51 -0.6
1,426,474 - QEN71_RS06415 0.51 -0.2
1,426,474 - QEN71_RS06415 0.51 -2.7
1,426,545 + QEN71_RS06415 0.60 -2.5
1,426,545 + QEN71_RS06415 0.60 -0.8
1,426,546 - QEN71_RS06415 0.60 +0.2
1,426,546 - QEN71_RS06415 0.60 -0.6
1,426,546 - QEN71_RS06415 0.60 -0.1
1,426,546 - QEN71_RS06415 0.60 -1.7
1,426,548 + QEN71_RS06415 0.60 -0.3
1,426,548 + QEN71_RS06415 0.60 -0.8
1,426,548 + QEN71_RS06415 0.60 +0.2
1,426,548 + QEN71_RS06415 0.60 -1.7
1,426,548 + QEN71_RS06415 0.60 -1.7
1,426,549 - QEN71_RS06415 0.60 -1.7
1,426,549 - QEN71_RS06415 0.60 -1.9
1,426,549 - QEN71_RS06415 0.60 -0.9
1,426,549 - QEN71_RS06415 0.60 -3.5
1,426,549 - QEN71_RS06415 0.60 -0.4
1,426,618 + QEN71_RS06415 0.69 -0.9
1,426,618 + QEN71_RS06415 0.69 -3.7
1,426,619 - QEN71_RS06415 0.69 -2.0
1,426,689 + QEN71_RS06415 0.77 -0.1
1,426,689 + QEN71_RS06415 0.77 +1.2
1,426,689 + QEN71_RS06415 0.77 +0.2
1,426,689 + QEN71_RS06415 0.77 -1.5
1,426,689 + QEN71_RS06415 0.77 -0.1
1,426,690 - QEN71_RS06415 0.77 -1.3
1,426,718 + QEN71_RS06415 0.81 -3.4
1,426,718 + QEN71_RS06415 0.81 -1.3
1,426,718 + QEN71_RS06415 0.81 -2.9
1,426,718 + QEN71_RS06415 0.81 -2.7
1,426,719 - QEN71_RS06415 0.81 -0.1
1,426,719 - QEN71_RS06415 0.81 +0.2
1,426,719 - QEN71_RS06415 0.81 +0.6
1,426,719 - QEN71_RS06415 0.81 -0.1
1,426,719 - QEN71_RS06415 0.81 -2.5
1,426,719 - QEN71_RS06415 0.81 -1.6
1,426,719 - QEN71_RS06415 0.81 -0.8
1,426,719 - QEN71_RS06415 0.81 -2.8
1,426,719 - QEN71_RS06415 0.81 -3.0
1,426,731 + QEN71_RS06415 0.82 -0.1
1,426,731 + QEN71_RS06415 0.82 -0.1
1,426,731 + QEN71_RS06415 0.82 -0.3
1,426,731 + QEN71_RS06415 0.82 -0.5
1,426,731 + QEN71_RS06415 0.82 -2.4
1,426,731 + QEN71_RS06415 0.82 -0.8
1,426,731 + QEN71_RS06415 0.82 -2.9
1,426,731 + QEN71_RS06415 0.82 -1.7
1,426,731 + QEN71_RS06415 0.82 +0.2
1,426,731 + QEN71_RS06415 0.82 -2.3
1,426,731 + QEN71_RS06415 0.82 -0.4
1,426,731 + QEN71_RS06415 0.82 -1.8
1,426,732 - QEN71_RS06415 0.83 -1.6
1,426,732 - QEN71_RS06415 0.83 -1.0
1,426,732 - QEN71_RS06415 0.83 -3.1
1,426,732 - QEN71_RS06415 0.83 +0.2
1,426,732 - QEN71_RS06415 0.83 -2.1
1,426,732 - QEN71_RS06415 0.83 -0.4
1,426,732 - QEN71_RS06415 0.83 -0.4
1,426,732 - QEN71_RS06415 0.83 -2.3
1,426,732 - QEN71_RS06415 0.83 -1.3
1,426,732 - QEN71_RS06415 0.83 -1.4
1,426,732 - QEN71_RS06415 0.83 -0.8
1,426,732 - QEN71_RS06415 0.83 +0.2
1,426,732 - QEN71_RS06415 0.83 -1.1
1,426,794 + -1.8
1,426,794 + -1.5
1,426,794 + -2.0
1,426,794 + -1.9
1,426,794 + -0.3
1,426,794 + -2.7
1,426,794 + -2.6
1,426,795 - -3.3
1,426,795 - -2.9
1,426,795 - -1.0
1,426,795 - -1.0
1,426,795 - -2.9
1,426,864 + -1.1
1,426,864 + -2.1
1,426,864 + -2.7
1,426,864 + -1.6
1,426,864 + -0.6
1,426,864 + -0.6
1,426,865 - -2.6
1,426,865 - -1.0
1,426,865 - -0.1
1,426,865 - -2.1
1,426,865 - -2.0
1,426,865 - -1.6
1,426,867 + -1.7
1,426,867 + -2.4
1,426,867 + -1.5
1,426,867 + +0.2
1,426,868 - -0.6
1,426,897 - +0.9
1,426,897 - +0.0
1,426,897 - -0.6
1,426,917 + -0.7
1,426,917 + +0.1
1,426,917 + -1.1
1,426,917 + -0.6
1,426,918 - +0.2
1,426,918 - +0.4
1,427,077 + +0.4
1,427,077 + +0.8
1,427,078 - -0.4
1,427,078 - +0.8
1,428,022 + -2.1
1,428,022 + -1.2
1,428,022 + -0.2
1,428,022 + +0.1
1,428,022 + -0.2
1,428,058 + -0.5
1,428,058 + -3.1
1,428,058 + +0.1
1,428,058 + -0.9
1,428,058 + +0.6
1,428,058 + +0.1
1,428,058 + -1.8
1,428,060 + -0.5
1,428,075 + +0.5
1,428,130 + +1.0
1,428,130 + -1.0
1,428,130 + +0.2
1,428,130 + +1.4
1,428,130 + +0.5

Or see this region's nucleotide sequence