Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS06145

Experiment: Motility_outer_sample_with_outgrowth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS06140 and QEN71_RS06145 are separated by 46 nucleotidesQEN71_RS06145 and QEN71_RS06150 are separated by 461 nucleotides QEN71_RS06140: QEN71_RS06140 - acetyl-CoA carboxylase carboxyltransferase subunit alpha, at 1,364,363 to 1,365,334 _RS06140 QEN71_RS06145: QEN71_RS06145 - tRNA lysidine(34) synthetase TilS, at 1,365,381 to 1,366,799 _RS06145 QEN71_RS06150: QEN71_RS06150 - aspartate kinase, at 1,367,261 to 1,368,511 _RS06150 Position (kb) 1365 1366 1367Strain fitness (log2 ratio) -2 -1 0 1 2at 1365.332 kb on + strandat 1365.333 kb on - strandat 1366.937 kb on + strandat 1366.937 kb on + strandat 1366.937 kb on + strandat 1366.937 kb on + strandat 1366.937 kb on + strandat 1366.937 kb on + strandat 1366.937 kb on + strandat 1366.937 kb on + strandat 1366.937 kb on + strandat 1366.937 kb on + strandat 1366.994 kb on + strandat 1367.064 kb on + strandat 1367.117 kb on + strandat 1367.117 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Motility_outer_sample_with_outgrowth
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1,365,332 + -0.5
1,365,333 - -2.7
1,366,937 + -1.3
1,366,937 + +0.8
1,366,937 + +1.5
1,366,937 + -0.3
1,366,937 + -1.1
1,366,937 + +2.2
1,366,937 + +0.1
1,366,937 + +0.1
1,366,937 + +2.2
1,366,937 + +1.0
1,366,994 + +0.2
1,367,064 + -0.5
1,367,117 + -1.7
1,367,117 + -1.1

Or see this region's nucleotide sequence