Experiment: Motility_outer_sample_with_outgrowth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS05440 and QEN71_RS05445 are separated by 16 nucleotides QEN71_RS05445 and QEN71_RS05450 are separated by 498 nucleotides QEN71_RS05450 and QEN71_RS05455 are separated by 179 nucleotides QEN71_RS05455 and QEN71_RS05460 are separated by 106 nucleotides
QEN71_RS05440: QEN71_RS05440 - DUF3443 domain-containing protein, at 1,202,853 to 1,204,175
_RS05440
QEN71_RS05445: QEN71_RS05445 - DUF2844 domain-containing protein, at 1,204,192 to 1,204,671
_RS05445
QEN71_RS05450: QEN71_RS05450 - outer membrane protein assembly factor BamC, at 1,205,170 to 1,206,399
_RS05450
QEN71_RS05455: QEN71_RS05455 - hypothetical protein, at 1,206,579 to 1,206,728
_RS05455
QEN71_RS05460: QEN71_RS05460 - DMT family transporter, at 1,206,835 to 1,207,767
_RS05460
Position (kb) 1205
1206
1207 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1204.256 kb on + strand, within QEN71_RS05445 at 1204.256 kb on + strand, within QEN71_RS05445 at 1204.256 kb on + strand, within QEN71_RS05445 at 1204.256 kb on + strand, within QEN71_RS05445 at 1204.256 kb on + strand, within QEN71_RS05445 at 1204.256 kb on + strand, within QEN71_RS05445 at 1204.256 kb on + strand, within QEN71_RS05445 at 1204.256 kb on + strand, within QEN71_RS05445 at 1204.256 kb on + strand, within QEN71_RS05445 at 1204.256 kb on + strand, within QEN71_RS05445 at 1204.257 kb on - strand, within QEN71_RS05445 at 1204.257 kb on - strand, within QEN71_RS05445 at 1204.257 kb on - strand, within QEN71_RS05445 at 1204.257 kb on - strand, within QEN71_RS05445 at 1204.257 kb on - strand, within QEN71_RS05445 at 1204.257 kb on - strand, within QEN71_RS05445 at 1204.257 kb on - strand, within QEN71_RS05445 at 1204.257 kb on - strand, within QEN71_RS05445 at 1204.257 kb on - strand, within QEN71_RS05445 at 1204.257 kb on - strand, within QEN71_RS05445 at 1204.257 kb on - strand, within QEN71_RS05445 at 1204.257 kb on - strand, within QEN71_RS05445 at 1204.257 kb on - strand, within QEN71_RS05445 at 1204.257 kb on - strand, within QEN71_RS05445 at 1204.257 kb on - strand, within QEN71_RS05445 at 1204.257 kb on - strand, within QEN71_RS05445 at 1204.373 kb on + strand, within QEN71_RS05445 at 1204.424 kb on + strand, within QEN71_RS05445 at 1204.425 kb on - strand, within QEN71_RS05445 at 1204.425 kb on - strand, within QEN71_RS05445 at 1204.454 kb on + strand, within QEN71_RS05445 at 1204.454 kb on + strand, within QEN71_RS05445 at 1204.454 kb on + strand, within QEN71_RS05445 at 1204.455 kb on - strand, within QEN71_RS05445 at 1204.455 kb on - strand, within QEN71_RS05445 at 1204.496 kb on - strand, within QEN71_RS05445 at 1204.496 kb on - strand, within QEN71_RS05445 at 1204.723 kb on + strand at 1204.723 kb on + strand at 1204.724 kb on - strand at 1204.724 kb on - strand at 1204.761 kb on - strand at 1204.775 kb on - strand at 1204.830 kb on - strand at 1204.844 kb on - strand at 1204.882 kb on - strand at 1204.896 kb on + strand at 1204.896 kb on + strand at 1204.896 kb on + strand at 1204.896 kb on + strand at 1204.896 kb on + strand at 1204.896 kb on + strand at 1204.896 kb on + strand at 1204.896 kb on + strand at 1204.896 kb on + strand at 1204.896 kb on + strand at 1204.896 kb on + strand at 1204.896 kb on + strand at 1204.897 kb on - strand at 1204.897 kb on - strand at 1204.897 kb on - strand at 1204.897 kb on - strand at 1204.897 kb on - strand at 1204.897 kb on - strand at 1204.897 kb on - strand at 1204.897 kb on - strand at 1204.897 kb on - strand at 1204.897 kb on - strand at 1204.897 kb on - strand at 1204.898 kb on + strand at 1204.898 kb on + strand at 1204.898 kb on + strand at 1204.898 kb on + strand at 1204.898 kb on + strand at 1204.898 kb on + strand at 1204.898 kb on + strand at 1204.898 kb on + strand at 1204.898 kb on + strand at 1204.898 kb on + strand at 1204.898 kb on + strand at 1204.898 kb on + strand at 1204.898 kb on + strand at 1204.898 kb on + strand at 1204.899 kb on - strand at 1204.899 kb on - strand at 1204.899 kb on - strand at 1204.899 kb on - strand at 1204.899 kb on - strand at 1204.899 kb on - strand at 1204.899 kb on - strand at 1204.899 kb on - strand at 1204.899 kb on - strand at 1204.899 kb on - strand at 1204.899 kb on - strand at 1204.899 kb on - strand at 1204.899 kb on - strand at 1204.899 kb on - strand at 1204.899 kb on - strand at 1204.899 kb on - strand at 1204.899 kb on - strand at 1204.899 kb on - strand at 1204.899 kb on - strand at 1204.899 kb on - strand at 1204.899 kb on - strand at 1204.904 kb on + strand at 1204.905 kb on - strand at 1204.905 kb on - strand at 1204.905 kb on - strand at 1204.930 kb on - strand at 1204.930 kb on - strand at 1204.930 kb on - strand at 1205.076 kb on + strand at 1205.076 kb on + strand at 1205.076 kb on + strand at 1205.077 kb on - strand at 1205.077 kb on - strand at 1205.077 kb on - strand at 1205.149 kb on + strand at 1206.088 kb on + strand, within QEN71_RS05450 at 1206.088 kb on + strand, within QEN71_RS05450 at 1206.088 kb on + strand, within QEN71_RS05450 at 1206.172 kb on + strand, within QEN71_RS05450 at 1206.172 kb on + strand, within QEN71_RS05450 at 1206.173 kb on - strand, within QEN71_RS05450 at 1206.185 kb on - strand, within QEN71_RS05450 at 1206.185 kb on - strand, within QEN71_RS05450 at 1206.592 kb on + strand at 1206.592 kb on + strand at 1206.592 kb on + strand at 1206.592 kb on + strand at 1206.593 kb on - strand at 1206.593 kb on - strand at 1206.598 kb on - strand, within QEN71_RS05455 at 1206.727 kb on - strand at 1207.064 kb on + strand, within QEN71_RS05460 at 1207.064 kb on + strand, within QEN71_RS05460 at 1207.064 kb on + strand, within QEN71_RS05460 at 1207.064 kb on + strand, within QEN71_RS05460 at 1207.064 kb on + strand, within QEN71_RS05460 at 1207.064 kb on + strand, within QEN71_RS05460 at 1207.064 kb on + strand, within QEN71_RS05460 at 1207.064 kb on + strand, within QEN71_RS05460 at 1207.064 kb on + strand, within QEN71_RS05460 at 1207.065 kb on - strand, within QEN71_RS05460 at 1207.065 kb on - strand, within QEN71_RS05460 at 1207.065 kb on - strand, within QEN71_RS05460 at 1207.065 kb on - strand, within QEN71_RS05460 at 1207.065 kb on - strand, within QEN71_RS05460 at 1207.065 kb on - strand, within QEN71_RS05460 at 1207.065 kb on - strand, within QEN71_RS05460 at 1207.065 kb on - strand, within QEN71_RS05460 at 1207.236 kb on + strand, within QEN71_RS05460 at 1207.236 kb on + strand, within QEN71_RS05460 at 1207.237 kb on - strand, within QEN71_RS05460 at 1207.237 kb on - strand, within QEN71_RS05460 at 1207.238 kb on + strand, within QEN71_RS05460 at 1207.238 kb on + strand, within QEN71_RS05460 at 1207.238 kb on + strand, within QEN71_RS05460 at 1207.239 kb on - strand, within QEN71_RS05460 at 1207.239 kb on - strand, within QEN71_RS05460 at 1207.256 kb on + strand, within QEN71_RS05460 at 1207.256 kb on + strand, within QEN71_RS05460 at 1207.257 kb on - strand, within QEN71_RS05460
Per-strain Table
Position Strand Gene LocusTag Fraction Motility_outer_sample_with_outgrowth remove 1,204,256 + QEN71_RS05445 0.13 +0.3 1,204,256 + QEN71_RS05445 0.13 +0.9 1,204,256 + QEN71_RS05445 0.13 -0.3 1,204,256 + QEN71_RS05445 0.13 +0.6 1,204,256 + QEN71_RS05445 0.13 -0.0 1,204,256 + QEN71_RS05445 0.13 -0.8 1,204,256 + QEN71_RS05445 0.13 +0.3 1,204,256 + QEN71_RS05445 0.13 -1.6 1,204,256 + QEN71_RS05445 0.13 -0.8 1,204,256 + QEN71_RS05445 0.13 +0.1 1,204,257 - QEN71_RS05445 0.14 +0.8 1,204,257 - QEN71_RS05445 0.14 +0.4 1,204,257 - QEN71_RS05445 0.14 -1.1 1,204,257 - QEN71_RS05445 0.14 +0.1 1,204,257 - QEN71_RS05445 0.14 +0.1 1,204,257 - QEN71_RS05445 0.14 -0.6 1,204,257 - QEN71_RS05445 0.14 +0.5 1,204,257 - QEN71_RS05445 0.14 +0.2 1,204,257 - QEN71_RS05445 0.14 +0.8 1,204,257 - QEN71_RS05445 0.14 +0.6 1,204,257 - QEN71_RS05445 0.14 -2.1 1,204,257 - QEN71_RS05445 0.14 -0.7 1,204,257 - QEN71_RS05445 0.14 -0.1 1,204,257 - QEN71_RS05445 0.14 +0.1 1,204,257 - QEN71_RS05445 0.14 +0.8 1,204,257 - QEN71_RS05445 0.14 -1.1 1,204,373 + QEN71_RS05445 0.38 -0.6 1,204,424 + QEN71_RS05445 0.48 -0.6 1,204,425 - QEN71_RS05445 0.49 -0.5 1,204,425 - QEN71_RS05445 0.49 -1.0 1,204,454 + QEN71_RS05445 0.55 +0.3 1,204,454 + QEN71_RS05445 0.55 +0.8 1,204,454 + QEN71_RS05445 0.55 +0.8 1,204,455 - QEN71_RS05445 0.55 +0.2 1,204,455 - QEN71_RS05445 0.55 +0.6 1,204,496 - QEN71_RS05445 0.63 -0.3 1,204,496 - QEN71_RS05445 0.63 -1.6 1,204,723 + -0.1 1,204,723 + -0.7 1,204,724 - -0.1 1,204,724 - +0.2 1,204,761 - +2.7 1,204,775 - -0.0 1,204,830 - +0.1 1,204,844 - +0.6 1,204,882 - -1.4 1,204,896 + -0.6 1,204,896 + -0.1 1,204,896 + -0.1 1,204,896 + -0.1 1,204,896 + -0.4 1,204,896 + +0.2 1,204,896 + +0.2 1,204,896 + +1.1 1,204,896 + +0.2 1,204,896 + -0.5 1,204,896 + -1.3 1,204,896 + -0.0 1,204,897 - +0.2 1,204,897 - -0.2 1,204,897 - +0.4 1,204,897 - +0.6 1,204,897 - +0.3 1,204,897 - -1.7 1,204,897 - -1.8 1,204,897 - -0.4 1,204,897 - -0.4 1,204,897 - +0.6 1,204,897 - +0.6 1,204,898 + +0.2 1,204,898 + -0.3 1,204,898 + +1.2 1,204,898 + +0.2 1,204,898 + +0.6 1,204,898 + -0.2 1,204,898 + -0.4 1,204,898 + -1.7 1,204,898 + -1.4 1,204,898 + -1.2 1,204,898 + -0.8 1,204,898 + -0.5 1,204,898 + +0.2 1,204,898 + -1.5 1,204,899 - +0.3 1,204,899 - +0.2 1,204,899 - +1.8 1,204,899 - -0.2 1,204,899 - -1.1 1,204,899 - -0.4 1,204,899 - +1.2 1,204,899 - -1.0 1,204,899 - +0.4 1,204,899 - +1.0 1,204,899 - +0.8 1,204,899 - -0.4 1,204,899 - -0.8 1,204,899 - +1.2 1,204,899 - -0.3 1,204,899 - +0.2 1,204,899 - -0.5 1,204,899 - -1.3 1,204,899 - -0.1 1,204,899 - -0.4 1,204,899 - +0.9 1,204,904 + +0.5 1,204,905 - +0.9 1,204,905 - -1.0 1,204,905 - +0.0 1,204,930 - +0.1 1,204,930 - -0.6 1,204,930 - -0.9 1,205,076 + +1.4 1,205,076 + +1.1 1,205,076 + -0.1 1,205,077 - -0.6 1,205,077 - -1.5 1,205,077 - -0.3 1,205,149 + -1.0 1,206,088 + QEN71_RS05450 0.75 +0.2 1,206,088 + QEN71_RS05450 0.75 -2.4 1,206,088 + QEN71_RS05450 0.75 -1.3 1,206,172 + QEN71_RS05450 0.81 -1.3 1,206,172 + QEN71_RS05450 0.81 -1.5 1,206,173 - QEN71_RS05450 0.82 -0.4 1,206,185 - QEN71_RS05450 0.83 -0.4 1,206,185 - QEN71_RS05450 0.83 -0.6 1,206,592 + +0.5 1,206,592 + +1.1 1,206,592 + +1.5 1,206,592 + +0.7 1,206,593 - +0.8 1,206,593 - -0.7 1,206,598 - QEN71_RS05455 0.13 +0.3 1,206,727 - -0.1 1,207,064 + QEN71_RS05460 0.25 -1.1 1,207,064 + QEN71_RS05460 0.25 -0.5 1,207,064 + QEN71_RS05460 0.25 -0.5 1,207,064 + QEN71_RS05460 0.25 -0.6 1,207,064 + QEN71_RS05460 0.25 -0.4 1,207,064 + QEN71_RS05460 0.25 +0.1 1,207,064 + QEN71_RS05460 0.25 +0.3 1,207,064 + QEN71_RS05460 0.25 -0.9 1,207,064 + QEN71_RS05460 0.25 +0.2 1,207,065 - QEN71_RS05460 0.25 -0.4 1,207,065 - QEN71_RS05460 0.25 +0.1 1,207,065 - QEN71_RS05460 0.25 -0.4 1,207,065 - QEN71_RS05460 0.25 +0.6 1,207,065 - QEN71_RS05460 0.25 +0.6 1,207,065 - QEN71_RS05460 0.25 +0.7 1,207,065 - QEN71_RS05460 0.25 -2.0 1,207,065 - QEN71_RS05460 0.25 -1.3 1,207,236 + QEN71_RS05460 0.43 +0.7 1,207,236 + QEN71_RS05460 0.43 +0.0 1,207,237 - QEN71_RS05460 0.43 -1.0 1,207,237 - QEN71_RS05460 0.43 -0.5 1,207,238 + QEN71_RS05460 0.43 -0.2 1,207,238 + QEN71_RS05460 0.43 +0.2 1,207,238 + QEN71_RS05460 0.43 -1.6 1,207,239 - QEN71_RS05460 0.43 +0.1 1,207,239 - QEN71_RS05460 0.43 -0.4 1,207,256 + QEN71_RS05460 0.45 -0.3 1,207,256 + QEN71_RS05460 0.45 +1.5 1,207,257 - QEN71_RS05460 0.45 +1.0
Or see this region's nucleotide sequence