Experiment: Motility_outer_sample_with_outgrowth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS04770 and QEN71_RS04775 are separated by 452 nucleotides QEN71_RS04775 and QEN71_RS04780 are separated by 133 nucleotides
QEN71_RS04770: QEN71_RS04770 - MFS transporter, at 1,040,249 to 1,041,493
_RS04770
QEN71_RS04775: QEN71_RS04775 - glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit, at 1,041,946 to 1,043,100
_RS04775
QEN71_RS04780: QEN71_RS04780 - carbamoyl-phosphate synthase large subunit, at 1,043,234 to 1,046,488
_RS04780
Position (kb)
1041
1042
1043
1044 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1041.000 kb on + strand, within QEN71_RS04770 at 1041.000 kb on + strand, within QEN71_RS04770 at 1041.001 kb on - strand, within QEN71_RS04770 at 1041.086 kb on + strand, within QEN71_RS04770 at 1041.183 kb on - strand, within QEN71_RS04770 at 1041.215 kb on + strand, within QEN71_RS04770 at 1041.215 kb on + strand, within QEN71_RS04770 at 1041.215 kb on + strand, within QEN71_RS04770 at 1041.215 kb on + strand, within QEN71_RS04770 at 1041.215 kb on + strand, within QEN71_RS04770 at 1041.215 kb on + strand, within QEN71_RS04770 at 1041.215 kb on + strand, within QEN71_RS04770 at 1041.215 kb on + strand, within QEN71_RS04770 at 1041.215 kb on + strand, within QEN71_RS04770 at 1041.215 kb on + strand, within QEN71_RS04770 at 1041.215 kb on + strand, within QEN71_RS04770 at 1041.215 kb on + strand, within QEN71_RS04770 at 1041.215 kb on + strand, within QEN71_RS04770 at 1041.216 kb on - strand, within QEN71_RS04770 at 1041.216 kb on - strand, within QEN71_RS04770 at 1041.216 kb on - strand, within QEN71_RS04770 at 1041.216 kb on - strand, within QEN71_RS04770 at 1041.216 kb on - strand, within QEN71_RS04770 at 1041.265 kb on + strand, within QEN71_RS04770 at 1041.266 kb on - strand, within QEN71_RS04770 at 1041.266 kb on - strand, within QEN71_RS04770 at 1041.266 kb on - strand, within QEN71_RS04770 at 1041.360 kb on - strand, within QEN71_RS04770 at 1041.428 kb on + strand at 1041.428 kb on + strand at 1041.428 kb on + strand at 1041.428 kb on + strand at 1041.428 kb on + strand at 1041.428 kb on + strand at 1041.428 kb on + strand at 1041.428 kb on + strand at 1041.428 kb on + strand at 1041.428 kb on + strand at 1041.428 kb on + strand at 1041.428 kb on + strand at 1041.428 kb on + strand at 1041.428 kb on + strand at 1041.428 kb on + strand at 1041.429 kb on - strand at 1041.429 kb on - strand at 1041.429 kb on - strand at 1041.429 kb on - strand at 1041.429 kb on - strand at 1041.491 kb on + strand at 1041.491 kb on + strand at 1041.491 kb on + strand at 1041.491 kb on + strand at 1041.491 kb on + strand at 1041.492 kb on - strand at 1041.492 kb on - strand at 1041.492 kb on - strand at 1041.492 kb on - strand at 1041.492 kb on - strand at 1041.492 kb on - strand at 1041.505 kb on + strand at 1041.506 kb on - strand at 1041.513 kb on + strand at 1041.587 kb on + strand at 1041.587 kb on + strand at 1041.587 kb on + strand at 1041.587 kb on + strand at 1041.588 kb on - strand at 1041.637 kb on + strand at 1041.658 kb on + strand at 1041.658 kb on + strand at 1041.658 kb on + strand at 1041.680 kb on + strand at 1043.098 kb on + strand at 1043.098 kb on + strand at 1043.098 kb on + strand at 1043.104 kb on + strand at 1043.104 kb on + strand at 1043.104 kb on + strand at 1043.104 kb on + strand at 1043.104 kb on + strand at 1043.104 kb on + strand at 1043.104 kb on + strand at 1043.104 kb on + strand at 1043.104 kb on + strand at 1043.104 kb on + strand at 1043.104 kb on + strand at 1043.104 kb on + strand at 1043.104 kb on + strand at 1043.104 kb on + strand at 1043.115 kb on + strand at 1043.216 kb on + strand at 1043.216 kb on + strand at 1043.216 kb on + strand at 1043.216 kb on + strand at 1043.216 kb on + strand at 1043.216 kb on + strand at 1043.216 kb on + strand at 1043.254 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Motility_outer_sample_with_outgrowth remove 1,041,000 + QEN71_RS04770 0.60 -0.3 1,041,000 + QEN71_RS04770 0.60 +0.8 1,041,001 - QEN71_RS04770 0.60 +0.9 1,041,086 + QEN71_RS04770 0.67 -0.5 1,041,183 - QEN71_RS04770 0.75 -0.2 1,041,215 + QEN71_RS04770 0.78 -0.3 1,041,215 + QEN71_RS04770 0.78 -0.5 1,041,215 + QEN71_RS04770 0.78 -0.0 1,041,215 + QEN71_RS04770 0.78 +0.4 1,041,215 + QEN71_RS04770 0.78 -0.2 1,041,215 + QEN71_RS04770 0.78 +0.9 1,041,215 + QEN71_RS04770 0.78 -1.4 1,041,215 + QEN71_RS04770 0.78 +0.6 1,041,215 + QEN71_RS04770 0.78 +1.7 1,041,215 + QEN71_RS04770 0.78 +2.6 1,041,215 + QEN71_RS04770 0.78 +0.2 1,041,215 + QEN71_RS04770 0.78 -0.8 1,041,215 + QEN71_RS04770 0.78 -0.2 1,041,216 - QEN71_RS04770 0.78 -1.2 1,041,216 - QEN71_RS04770 0.78 -0.2 1,041,216 - QEN71_RS04770 0.78 -0.9 1,041,216 - QEN71_RS04770 0.78 +0.3 1,041,216 - QEN71_RS04770 0.78 +1.2 1,041,265 + QEN71_RS04770 0.82 +0.2 1,041,266 - QEN71_RS04770 0.82 -1.7 1,041,266 - QEN71_RS04770 0.82 +0.1 1,041,266 - QEN71_RS04770 0.82 +0.6 1,041,360 - QEN71_RS04770 0.89 +1.0 1,041,428 + -1.4 1,041,428 + -0.4 1,041,428 + -1.2 1,041,428 + -1.8 1,041,428 + -1.0 1,041,428 + +0.4 1,041,428 + -2.1 1,041,428 + -2.5 1,041,428 + +0.2 1,041,428 + +0.2 1,041,428 + +0.7 1,041,428 + +0.1 1,041,428 + -0.6 1,041,428 + -1.0 1,041,428 + +0.2 1,041,429 - +0.2 1,041,429 - +0.3 1,041,429 - +0.2 1,041,429 - -0.2 1,041,429 - -1.5 1,041,491 + -0.2 1,041,491 + -1.3 1,041,491 + +0.2 1,041,491 + -0.4 1,041,491 + -0.7 1,041,492 - -0.7 1,041,492 - -0.4 1,041,492 - +0.9 1,041,492 - -0.1 1,041,492 - +0.2 1,041,492 - -0.3 1,041,505 + -0.7 1,041,506 - +0.0 1,041,513 + +0.2 1,041,587 + -0.3 1,041,587 + +1.2 1,041,587 + -1.2 1,041,587 + +0.7 1,041,588 - +1.7 1,041,637 + -0.6 1,041,658 + -1.2 1,041,658 + -0.6 1,041,658 + +0.2 1,041,680 + +0.2 1,043,098 + +0.5 1,043,098 + +0.2 1,043,098 + -1.0 1,043,104 + -1.3 1,043,104 + -0.3 1,043,104 + -1.0 1,043,104 + +0.1 1,043,104 + -0.3 1,043,104 + +0.5 1,043,104 + +0.5 1,043,104 + +0.4 1,043,104 + +1.0 1,043,104 + +0.7 1,043,104 + -0.1 1,043,104 + +1.0 1,043,104 + -0.7 1,043,104 + -1.1 1,043,115 + -0.4 1,043,216 + -1.8 1,043,216 + +0.8 1,043,216 + -0.3 1,043,216 + +2.0 1,043,216 + -0.2 1,043,216 + +0.8 1,043,216 + +0.6 1,043,254 + -0.2
Or see this region's nucleotide sequence