Experiment: Motility_outer_sample_with_outgrowth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS04730 and QEN71_RS04735 are separated by 79 nucleotides QEN71_RS04735 and QEN71_RS04740 are separated by 160 nucleotides QEN71_RS04740 and QEN71_RS04745 are separated by 48 nucleotides
QEN71_RS04730: QEN71_RS04730 - hypothetical protein, at 1,033,599 to 1,034,447
_RS04730
QEN71_RS04735: QEN71_RS04735 - DUF2214 family protein, at 1,034,527 to 1,034,985
_RS04735
QEN71_RS04740: QEN71_RS04740 - tRNA-Val, at 1,035,146 to 1,035,220
_RS04740
QEN71_RS04745: QEN71_RS04745 - DNA polymerase III subunit epsilon, at 1,035,269 to 1,036,018
_RS04745
Position (kb)
1034
1035 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2 at 1033.537 kb on + strand at 1033.538 kb on - strand at 1033.538 kb on - strand at 1033.540 kb on + strand at 1033.540 kb on + strand at 1033.541 kb on - strand at 1033.541 kb on - strand at 1033.541 kb on - strand at 1033.541 kb on - strand at 1033.541 kb on - strand at 1033.541 kb on - strand at 1033.541 kb on - strand at 1033.541 kb on - strand at 1033.546 kb on + strand at 1033.546 kb on + strand at 1033.546 kb on + strand at 1033.546 kb on + strand at 1033.546 kb on + strand at 1033.546 kb on + strand at 1033.546 kb on + strand at 1033.546 kb on + strand at 1033.546 kb on + strand at 1033.546 kb on + strand at 1033.546 kb on + strand at 1033.546 kb on + strand at 1033.547 kb on - strand at 1033.547 kb on - strand at 1033.547 kb on - strand at 1033.547 kb on - strand at 1033.547 kb on - strand at 1033.547 kb on - strand at 1033.547 kb on - strand at 1033.548 kb on + strand at 1033.548 kb on + strand at 1033.548 kb on + strand at 1033.548 kb on + strand at 1033.549 kb on - strand at 1033.549 kb on - strand at 1033.549 kb on - strand at 1033.549 kb on - strand at 1033.549 kb on - strand at 1033.549 kb on - strand at 1033.549 kb on - strand at 1033.584 kb on + strand at 1033.584 kb on + strand at 1033.584 kb on + strand at 1033.584 kb on + strand at 1033.585 kb on - strand at 1033.696 kb on + strand, within QEN71_RS04730 at 1033.697 kb on - strand, within QEN71_RS04730 at 1033.697 kb on - strand, within QEN71_RS04730 at 1033.725 kb on - strand, within QEN71_RS04730 at 1033.725 kb on - strand, within QEN71_RS04730 at 1033.765 kb on + strand, within QEN71_RS04730 at 1033.765 kb on + strand, within QEN71_RS04730 at 1033.765 kb on + strand, within QEN71_RS04730 at 1033.765 kb on + strand, within QEN71_RS04730 at 1033.765 kb on + strand, within QEN71_RS04730 at 1033.765 kb on + strand, within QEN71_RS04730 at 1033.765 kb on + strand, within QEN71_RS04730 at 1033.765 kb on + strand, within QEN71_RS04730 at 1033.765 kb on + strand, within QEN71_RS04730 at 1033.765 kb on + strand, within QEN71_RS04730 at 1033.766 kb on - strand, within QEN71_RS04730 at 1033.766 kb on - strand, within QEN71_RS04730 at 1033.766 kb on - strand, within QEN71_RS04730 at 1033.766 kb on - strand, within QEN71_RS04730 at 1033.766 kb on - strand, within QEN71_RS04730 at 1033.766 kb on - strand, within QEN71_RS04730 at 1033.766 kb on - strand, within QEN71_RS04730 at 1033.766 kb on - strand, within QEN71_RS04730 at 1033.766 kb on - strand, within QEN71_RS04730 at 1033.998 kb on + strand, within QEN71_RS04730 at 1033.998 kb on + strand, within QEN71_RS04730 at 1033.998 kb on + strand, within QEN71_RS04730 at 1033.999 kb on - strand, within QEN71_RS04730 at 1033.999 kb on - strand, within QEN71_RS04730 at 1033.999 kb on - strand, within QEN71_RS04730 at 1033.999 kb on - strand, within QEN71_RS04730 at 1034.011 kb on + strand, within QEN71_RS04730 at 1034.011 kb on + strand, within QEN71_RS04730 at 1034.011 kb on + strand, within QEN71_RS04730 at 1034.011 kb on + strand, within QEN71_RS04730 at 1034.011 kb on + strand, within QEN71_RS04730 at 1034.012 kb on - strand, within QEN71_RS04730 at 1034.048 kb on + strand, within QEN71_RS04730 at 1034.148 kb on + strand, within QEN71_RS04730 at 1034.148 kb on + strand, within QEN71_RS04730 at 1034.148 kb on + strand, within QEN71_RS04730 at 1034.149 kb on - strand, within QEN71_RS04730 at 1034.149 kb on - strand, within QEN71_RS04730 at 1034.357 kb on + strand, within QEN71_RS04730 at 1034.743 kb on + strand, within QEN71_RS04735 at 1034.743 kb on + strand, within QEN71_RS04735 at 1034.743 kb on + strand, within QEN71_RS04735 at 1034.743 kb on + strand, within QEN71_RS04735 at 1034.744 kb on - strand, within QEN71_RS04735 at 1034.744 kb on - strand, within QEN71_RS04735 at 1034.744 kb on - strand, within QEN71_RS04735 at 1034.744 kb on - strand, within QEN71_RS04735 at 1034.744 kb on - strand, within QEN71_RS04735 at 1034.744 kb on - strand, within QEN71_RS04735 at 1034.746 kb on + strand, within QEN71_RS04735 at 1034.746 kb on + strand, within QEN71_RS04735 at 1034.746 kb on + strand, within QEN71_RS04735 at 1034.746 kb on + strand, within QEN71_RS04735 at 1034.746 kb on + strand, within QEN71_RS04735 at 1034.747 kb on - strand, within QEN71_RS04735 at 1034.747 kb on - strand, within QEN71_RS04735 at 1034.747 kb on - strand, within QEN71_RS04735 at 1034.747 kb on - strand, within QEN71_RS04735 at 1034.747 kb on - strand, within QEN71_RS04735 at 1034.747 kb on - strand, within QEN71_RS04735 at 1034.747 kb on - strand, within QEN71_RS04735 at 1034.747 kb on - strand, within QEN71_RS04735 at 1034.871 kb on + strand, within QEN71_RS04735 at 1034.886 kb on + strand, within QEN71_RS04735 at 1034.886 kb on + strand, within QEN71_RS04735 at 1034.886 kb on + strand, within QEN71_RS04735 at 1034.886 kb on + strand, within QEN71_RS04735 at 1034.886 kb on + strand, within QEN71_RS04735 at 1034.886 kb on + strand, within QEN71_RS04735 at 1034.887 kb on - strand, within QEN71_RS04735 at 1035.016 kb on + strand at 1035.016 kb on + strand at 1035.016 kb on + strand at 1035.016 kb on + strand at 1035.016 kb on + strand at 1035.017 kb on - strand at 1035.017 kb on - strand at 1035.017 kb on - strand at 1035.017 kb on - strand at 1035.017 kb on - strand at 1035.017 kb on - strand at 1035.017 kb on - strand at 1035.017 kb on - strand at 1035.017 kb on - strand at 1035.017 kb on - strand at 1035.017 kb on - strand at 1035.017 kb on - strand at 1035.074 kb on + strand at 1035.074 kb on + strand at 1035.075 kb on - strand at 1035.263 kb on + strand at 1035.271 kb on - strand at 1035.271 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Motility_outer_sample_with_outgrowth remove 1,033,537 + +0.5 1,033,538 - -0.3 1,033,538 - -0.4 1,033,540 + -0.2 1,033,540 + -0.0 1,033,541 - -0.0 1,033,541 - -0.0 1,033,541 - -1.3 1,033,541 - -0.3 1,033,541 - -0.2 1,033,541 - +0.2 1,033,541 - +0.1 1,033,541 - -0.4 1,033,546 + -1.0 1,033,546 + -5.5 1,033,546 + -4.7 1,033,546 + -1.8 1,033,546 + -1.8 1,033,546 + -3.6 1,033,546 + -3.5 1,033,546 + -3.6 1,033,546 + -2.5 1,033,546 + -3.7 1,033,546 + -3.5 1,033,546 + -3.6 1,033,547 - -1.4 1,033,547 - -0.0 1,033,547 - -0.0 1,033,547 - +0.4 1,033,547 - -0.3 1,033,547 - -0.6 1,033,547 - +0.2 1,033,548 + -0.2 1,033,548 + +0.8 1,033,548 + -1.3 1,033,548 + -1.4 1,033,549 - -1.3 1,033,549 - -2.8 1,033,549 - -1.0 1,033,549 - +0.1 1,033,549 - +0.9 1,033,549 - -0.3 1,033,549 - -0.2 1,033,584 + -2.0 1,033,584 + -2.5 1,033,584 + +0.1 1,033,584 + -0.2 1,033,585 - +0.4 1,033,696 + QEN71_RS04730 0.11 -0.7 1,033,697 - QEN71_RS04730 0.12 +1.1 1,033,697 - QEN71_RS04730 0.12 -0.1 1,033,725 - QEN71_RS04730 0.15 -0.1 1,033,725 - QEN71_RS04730 0.15 -1.9 1,033,765 + QEN71_RS04730 0.20 -0.9 1,033,765 + QEN71_RS04730 0.20 +0.6 1,033,765 + QEN71_RS04730 0.20 -0.7 1,033,765 + QEN71_RS04730 0.20 -1.6 1,033,765 + QEN71_RS04730 0.20 -0.1 1,033,765 + QEN71_RS04730 0.20 -0.3 1,033,765 + QEN71_RS04730 0.20 +0.6 1,033,765 + QEN71_RS04730 0.20 +1.3 1,033,765 + QEN71_RS04730 0.20 +0.9 1,033,765 + QEN71_RS04730 0.20 -0.1 1,033,766 - QEN71_RS04730 0.20 +1.1 1,033,766 - QEN71_RS04730 0.20 -1.2 1,033,766 - QEN71_RS04730 0.20 +0.8 1,033,766 - QEN71_RS04730 0.20 -1.3 1,033,766 - QEN71_RS04730 0.20 -2.6 1,033,766 - QEN71_RS04730 0.20 -0.9 1,033,766 - QEN71_RS04730 0.20 -1.4 1,033,766 - QEN71_RS04730 0.20 -0.9 1,033,766 - QEN71_RS04730 0.20 +0.3 1,033,998 + QEN71_RS04730 0.47 -1.9 1,033,998 + QEN71_RS04730 0.47 +0.3 1,033,998 + QEN71_RS04730 0.47 -0.2 1,033,999 - QEN71_RS04730 0.47 -0.9 1,033,999 - QEN71_RS04730 0.47 -0.7 1,033,999 - QEN71_RS04730 0.47 -0.1 1,033,999 - QEN71_RS04730 0.47 -1.2 1,034,011 + QEN71_RS04730 0.49 -0.4 1,034,011 + QEN71_RS04730 0.49 +1.1 1,034,011 + QEN71_RS04730 0.49 -1.4 1,034,011 + QEN71_RS04730 0.49 +0.3 1,034,011 + QEN71_RS04730 0.49 -1.4 1,034,012 - QEN71_RS04730 0.49 +0.0 1,034,048 + QEN71_RS04730 0.53 -1.1 1,034,148 + QEN71_RS04730 0.65 +0.4 1,034,148 + QEN71_RS04730 0.65 +1.0 1,034,148 + QEN71_RS04730 0.65 +0.5 1,034,149 - QEN71_RS04730 0.65 -1.8 1,034,149 - QEN71_RS04730 0.65 -1.2 1,034,357 + QEN71_RS04730 0.89 -0.5 1,034,743 + QEN71_RS04735 0.47 +0.1 1,034,743 + QEN71_RS04735 0.47 -0.6 1,034,743 + QEN71_RS04735 0.47 +0.3 1,034,743 + QEN71_RS04735 0.47 +0.4 1,034,744 - QEN71_RS04735 0.47 -0.9 1,034,744 - QEN71_RS04735 0.47 -1.3 1,034,744 - QEN71_RS04735 0.47 -1.1 1,034,744 - QEN71_RS04735 0.47 -0.4 1,034,744 - QEN71_RS04735 0.47 -0.3 1,034,744 - QEN71_RS04735 0.47 -0.4 1,034,746 + QEN71_RS04735 0.48 -0.7 1,034,746 + QEN71_RS04735 0.48 -0.8 1,034,746 + QEN71_RS04735 0.48 +0.4 1,034,746 + QEN71_RS04735 0.48 -0.2 1,034,746 + QEN71_RS04735 0.48 +1.2 1,034,747 - QEN71_RS04735 0.48 -0.1 1,034,747 - QEN71_RS04735 0.48 -0.7 1,034,747 - QEN71_RS04735 0.48 +0.2 1,034,747 - QEN71_RS04735 0.48 -0.2 1,034,747 - QEN71_RS04735 0.48 -1.0 1,034,747 - QEN71_RS04735 0.48 +0.3 1,034,747 - QEN71_RS04735 0.48 -1.4 1,034,747 - QEN71_RS04735 0.48 -0.1 1,034,871 + QEN71_RS04735 0.75 -1.8 1,034,886 + QEN71_RS04735 0.78 +0.8 1,034,886 + QEN71_RS04735 0.78 -0.2 1,034,886 + QEN71_RS04735 0.78 -0.1 1,034,886 + QEN71_RS04735 0.78 +0.3 1,034,886 + QEN71_RS04735 0.78 +0.2 1,034,886 + QEN71_RS04735 0.78 -1.1 1,034,887 - QEN71_RS04735 0.78 -0.0 1,035,016 + +0.9 1,035,016 + +0.2 1,035,016 + +0.6 1,035,016 + -0.2 1,035,016 + +0.1 1,035,017 - -0.2 1,035,017 - +2.5 1,035,017 - +0.8 1,035,017 - -0.4 1,035,017 - -0.3 1,035,017 - -0.8 1,035,017 - -0.7 1,035,017 - -0.2 1,035,017 - +2.0 1,035,017 - -0.6 1,035,017 - -0.9 1,035,017 - -0.0 1,035,074 + -0.2 1,035,074 + -0.7 1,035,075 - -1.8 1,035,263 + -1.4 1,035,271 - -0.7 1,035,271 - -0.2
Or see this region's nucleotide sequence