Experiment: Motility_outer_sample_with_outgrowth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS03740 and QEN71_RS03745 are separated by 3 nucleotides QEN71_RS03745 and QEN71_RS03750 are separated by 6 nucleotides
QEN71_RS03740: QEN71_RS03740 - sialidase family protein, at 827,899 to 829,152
_RS03740
QEN71_RS03745: QEN71_RS03745 - TlpA family protein disulfide reductase, at 829,156 to 829,623
_RS03745
QEN71_RS03750: QEN71_RS03750 - LysR family transcriptional regulator, at 829,630 to 830,565
_RS03750
Position (kb) 829
830 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 828.187 kb on + strand, within QEN71_RS03740 at 828.187 kb on + strand, within QEN71_RS03740 at 828.187 kb on + strand, within QEN71_RS03740 at 828.187 kb on + strand, within QEN71_RS03740 at 828.244 kb on + strand, within QEN71_RS03740 at 828.244 kb on + strand, within QEN71_RS03740 at 828.245 kb on - strand, within QEN71_RS03740 at 828.277 kb on + strand, within QEN71_RS03740 at 828.277 kb on + strand, within QEN71_RS03740 at 828.278 kb on - strand, within QEN71_RS03740 at 828.487 kb on + strand, within QEN71_RS03740 at 828.487 kb on + strand, within QEN71_RS03740 at 828.487 kb on + strand, within QEN71_RS03740 at 828.487 kb on + strand, within QEN71_RS03740 at 828.488 kb on - strand, within QEN71_RS03740 at 828.488 kb on - strand, within QEN71_RS03740 at 828.490 kb on + strand, within QEN71_RS03740 at 828.491 kb on - strand, within QEN71_RS03740 at 828.818 kb on - strand, within QEN71_RS03740 at 828.820 kb on + strand, within QEN71_RS03740 at 828.820 kb on + strand, within QEN71_RS03740 at 829.090 kb on + strand at 829.090 kb on + strand at 829.090 kb on + strand at 829.120 kb on + strand at 829.120 kb on + strand at 829.120 kb on + strand at 829.120 kb on + strand at 829.120 kb on + strand at 829.120 kb on + strand at 829.120 kb on + strand at 829.120 kb on + strand at 829.120 kb on + strand at 829.120 kb on + strand at 829.121 kb on - strand at 829.121 kb on - strand at 829.121 kb on - strand at 829.121 kb on - strand at 829.121 kb on - strand at 829.121 kb on - strand at 829.121 kb on - strand at 829.121 kb on - strand at 829.121 kb on - strand at 829.121 kb on - strand at 829.121 kb on - strand at 829.150 kb on + strand at 829.150 kb on + strand at 829.151 kb on - strand at 829.151 kb on - strand at 829.151 kb on - strand at 829.151 kb on - strand at 829.231 kb on + strand, within QEN71_RS03745 at 829.312 kb on + strand, within QEN71_RS03745 at 829.312 kb on + strand, within QEN71_RS03745 at 829.313 kb on - strand, within QEN71_RS03745 at 829.313 kb on - strand, within QEN71_RS03745 at 829.313 kb on - strand, within QEN71_RS03745 at 829.313 kb on - strand, within QEN71_RS03745 at 829.313 kb on - strand, within QEN71_RS03745 at 829.313 kb on - strand, within QEN71_RS03745 at 829.313 kb on - strand, within QEN71_RS03745 at 829.313 kb on - strand, within QEN71_RS03745 at 829.465 kb on + strand, within QEN71_RS03745 at 829.564 kb on - strand, within QEN71_RS03745 at 829.632 kb on - strand at 829.839 kb on + strand, within QEN71_RS03750 at 829.840 kb on - strand, within QEN71_RS03750 at 830.066 kb on + strand, within QEN71_RS03750 at 830.066 kb on + strand, within QEN71_RS03750 at 830.067 kb on - strand, within QEN71_RS03750 at 830.123 kb on + strand, within QEN71_RS03750 at 830.123 kb on + strand, within QEN71_RS03750 at 830.123 kb on + strand, within QEN71_RS03750 at 830.124 kb on - strand, within QEN71_RS03750 at 830.124 kb on - strand, within QEN71_RS03750 at 830.249 kb on + strand, within QEN71_RS03750 at 830.250 kb on - strand, within QEN71_RS03750 at 830.250 kb on - strand, within QEN71_RS03750 at 830.250 kb on - strand, within QEN71_RS03750 at 830.250 kb on - strand, within QEN71_RS03750 at 830.250 kb on - strand, within QEN71_RS03750 at 830.537 kb on + strand at 830.538 kb on - strand at 830.538 kb on - strand at 830.560 kb on - strand at 830.576 kb on + strand at 830.578 kb on + strand at 830.578 kb on + strand at 830.579 kb on - strand at 830.579 kb on - strand at 830.585 kb on + strand at 830.585 kb on + strand at 830.597 kb on + strand at 830.610 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Motility_outer_sample_with_outgrowth remove 828,187 + QEN71_RS03740 0.23 +0.1 828,187 + QEN71_RS03740 0.23 -1.6 828,187 + QEN71_RS03740 0.23 -1.2 828,187 + QEN71_RS03740 0.23 +0.1 828,244 + QEN71_RS03740 0.28 -1.5 828,244 + QEN71_RS03740 0.28 -2.8 828,245 - QEN71_RS03740 0.28 +0.1 828,277 + QEN71_RS03740 0.30 +0.1 828,277 + QEN71_RS03740 0.30 +0.1 828,278 - QEN71_RS03740 0.30 -3.1 828,487 + QEN71_RS03740 0.47 -1.8 828,487 + QEN71_RS03740 0.47 -2.1 828,487 + QEN71_RS03740 0.47 -0.5 828,487 + QEN71_RS03740 0.47 +0.1 828,488 - QEN71_RS03740 0.47 -0.2 828,488 - QEN71_RS03740 0.47 -1.7 828,490 + QEN71_RS03740 0.47 -2.9 828,491 - QEN71_RS03740 0.47 +0.1 828,818 - QEN71_RS03740 0.73 -2.8 828,820 + QEN71_RS03740 0.73 +0.5 828,820 + QEN71_RS03740 0.73 +0.1 829,090 + -0.2 829,090 + +0.1 829,090 + +1.1 829,120 + -0.3 829,120 + -3.1 829,120 + -2.7 829,120 + -1.5 829,120 + -1.6 829,120 + -1.5 829,120 + -2.4 829,120 + -0.4 829,120 + -2.0 829,120 + -1.9 829,121 - -1.2 829,121 - -0.7 829,121 - -0.8 829,121 - -1.9 829,121 - -0.4 829,121 - -1.2 829,121 - -0.7 829,121 - -1.9 829,121 - +0.9 829,121 - -1.6 829,121 - -2.2 829,150 + +1.3 829,150 + -0.8 829,151 - -0.5 829,151 - +0.1 829,151 - -1.7 829,151 - -1.1 829,231 + QEN71_RS03745 0.16 -0.9 829,312 + QEN71_RS03745 0.33 -1.3 829,312 + QEN71_RS03745 0.33 -1.5 829,313 - QEN71_RS03745 0.34 -1.5 829,313 - QEN71_RS03745 0.34 -2.1 829,313 - QEN71_RS03745 0.34 -0.7 829,313 - QEN71_RS03745 0.34 -0.9 829,313 - QEN71_RS03745 0.34 -1.3 829,313 - QEN71_RS03745 0.34 -1.5 829,313 - QEN71_RS03745 0.34 -2.5 829,313 - QEN71_RS03745 0.34 -1.8 829,465 + QEN71_RS03745 0.66 -0.7 829,564 - QEN71_RS03745 0.87 -1.1 829,632 - -0.7 829,839 + QEN71_RS03750 0.22 +0.3 829,840 - QEN71_RS03750 0.22 -0.9 830,066 + QEN71_RS03750 0.47 -0.7 830,066 + QEN71_RS03750 0.47 -0.6 830,067 - QEN71_RS03750 0.47 -1.5 830,123 + QEN71_RS03750 0.53 -0.2 830,123 + QEN71_RS03750 0.53 +0.7 830,123 + QEN71_RS03750 0.53 -0.6 830,124 - QEN71_RS03750 0.53 -0.6 830,124 - QEN71_RS03750 0.53 -0.1 830,249 + QEN71_RS03750 0.66 -1.0 830,250 - QEN71_RS03750 0.66 -0.0 830,250 - QEN71_RS03750 0.66 +1.8 830,250 - QEN71_RS03750 0.66 +0.7 830,250 - QEN71_RS03750 0.66 -0.5 830,250 - QEN71_RS03750 0.66 -0.4 830,537 + -0.3 830,538 - -0.2 830,538 - -0.3 830,560 - -0.6 830,576 + +1.2 830,578 + -0.3 830,578 + -0.8 830,579 - +0.3 830,579 - +0.4 830,585 + -1.3 830,585 + -1.2 830,597 + -1.5 830,610 + +0.2
Or see this region's nucleotide sequence