Experiment: Motility_outer_sample_with_outgrowth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS02905 and QEN71_RS02910 are separated by 10 nucleotides QEN71_RS02910 and QEN71_RS02915 are separated by 178 nucleotides QEN71_RS02915 and QEN71_RS02920 are separated by 33 nucleotides QEN71_RS02920 and QEN71_RS02925 are separated by 263 nucleotides
QEN71_RS02905: QEN71_RS02905 - CoA transferase, at 647,017 to 648,411
_RS02905
QEN71_RS02910: QEN71_RS02910 - GntR family transcriptional regulator, at 648,422 to 649,168
_RS02910
QEN71_RS02915: QEN71_RS02915 - aldo/keto reductase, at 649,347 to 650,192
_RS02915
QEN71_RS02920: QEN71_RS02920 - hypothetical protein, at 650,226 to 650,681
_RS02920
QEN71_RS02925: QEN71_RS02925 - hypothetical protein, at 650,945 to 651,913
_RS02925
Position (kb) 649
650
651 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 648.358 kb on + strand at 648.358 kb on + strand at 648.359 kb on - strand at 648.409 kb on + strand at 648.409 kb on + strand at 648.409 kb on + strand at 648.409 kb on + strand at 648.410 kb on - strand at 648.423 kb on + strand at 648.423 kb on + strand at 648.424 kb on - strand at 648.424 kb on - strand at 648.424 kb on - strand at 648.424 kb on - strand at 648.450 kb on + strand at 648.454 kb on - strand at 648.454 kb on - strand at 648.468 kb on + strand at 648.468 kb on + strand at 648.468 kb on + strand at 648.468 kb on + strand at 648.468 kb on + strand at 648.468 kb on + strand at 648.469 kb on - strand at 648.473 kb on - strand at 648.507 kb on + strand, within QEN71_RS02910 at 648.508 kb on - strand, within QEN71_RS02910 at 648.616 kb on + strand, within QEN71_RS02910 at 648.617 kb on - strand, within QEN71_RS02910 at 648.639 kb on + strand, within QEN71_RS02910 at 648.639 kb on + strand, within QEN71_RS02910 at 648.639 kb on + strand, within QEN71_RS02910 at 648.639 kb on + strand, within QEN71_RS02910 at 648.639 kb on + strand, within QEN71_RS02910 at 648.639 kb on + strand, within QEN71_RS02910 at 648.640 kb on - strand, within QEN71_RS02910 at 648.640 kb on - strand, within QEN71_RS02910 at 648.640 kb on - strand, within QEN71_RS02910 at 648.640 kb on - strand, within QEN71_RS02910 at 648.640 kb on - strand, within QEN71_RS02910 at 648.645 kb on + strand, within QEN71_RS02910 at 648.645 kb on + strand, within QEN71_RS02910 at 648.645 kb on + strand, within QEN71_RS02910 at 648.646 kb on - strand, within QEN71_RS02910 at 648.646 kb on - strand, within QEN71_RS02910 at 648.904 kb on - strand, within QEN71_RS02910 at 649.101 kb on + strand at 649.101 kb on + strand at 649.101 kb on + strand at 649.102 kb on - strand at 649.102 kb on - strand at 649.102 kb on - strand at 649.102 kb on - strand at 649.183 kb on + strand at 649.183 kb on + strand at 649.184 kb on - strand at 649.184 kb on - strand at 649.201 kb on + strand at 649.201 kb on + strand at 649.201 kb on + strand at 649.201 kb on + strand at 649.202 kb on - strand at 649.202 kb on - strand at 649.202 kb on - strand at 649.202 kb on - strand at 649.222 kb on + strand at 649.222 kb on + strand at 649.223 kb on - strand at 649.223 kb on - strand at 649.224 kb on + strand at 649.224 kb on + strand at 649.225 kb on - strand at 649.225 kb on - strand at 649.269 kb on + strand at 649.298 kb on + strand at 649.298 kb on + strand at 649.298 kb on + strand at 649.298 kb on + strand at 649.299 kb on - strand at 649.299 kb on - strand at 649.299 kb on - strand at 649.299 kb on - strand at 649.299 kb on - strand at 649.299 kb on - strand at 649.302 kb on + strand at 649.332 kb on - strand at 649.516 kb on - strand, within QEN71_RS02915 at 649.597 kb on - strand, within QEN71_RS02915 at 649.680 kb on + strand, within QEN71_RS02915 at 649.681 kb on - strand, within QEN71_RS02915 at 649.681 kb on - strand, within QEN71_RS02915 at 649.681 kb on - strand, within QEN71_RS02915 at 649.681 kb on - strand, within QEN71_RS02915 at 649.855 kb on - strand, within QEN71_RS02915 at 649.855 kb on - strand, within QEN71_RS02915 at 649.855 kb on - strand, within QEN71_RS02915 at 649.855 kb on - strand, within QEN71_RS02915 at 649.929 kb on + strand, within QEN71_RS02915 at 649.930 kb on - strand, within QEN71_RS02915 at 649.930 kb on - strand, within QEN71_RS02915 at 649.930 kb on - strand, within QEN71_RS02915 at 649.930 kb on - strand, within QEN71_RS02915 at 649.930 kb on - strand, within QEN71_RS02915 at 650.215 kb on + strand at 650.215 kb on + strand at 650.215 kb on + strand at 650.215 kb on + strand at 650.215 kb on + strand at 650.215 kb on + strand at 650.215 kb on + strand at 650.216 kb on - strand at 650.216 kb on - strand at 650.216 kb on - strand at 650.216 kb on - strand at 650.216 kb on - strand at 650.216 kb on - strand at 650.216 kb on - strand at 650.246 kb on + strand at 650.246 kb on + strand at 650.246 kb on + strand at 650.246 kb on + strand at 650.246 kb on + strand at 650.246 kb on + strand at 650.246 kb on + strand at 650.247 kb on - strand at 650.247 kb on - strand at 650.247 kb on - strand at 650.247 kb on - strand at 650.247 kb on - strand at 650.247 kb on - strand at 650.432 kb on - strand, within QEN71_RS02920 at 650.432 kb on - strand, within QEN71_RS02920 at 650.437 kb on + strand, within QEN71_RS02920 at 650.524 kb on + strand, within QEN71_RS02920 at 650.524 kb on + strand, within QEN71_RS02920 at 650.683 kb on + strand at 650.683 kb on + strand at 650.684 kb on - strand at 650.684 kb on - strand at 650.684 kb on - strand at 650.684 kb on - strand at 650.684 kb on - strand at 650.684 kb on - strand at 650.684 kb on - strand at 650.684 kb on - strand at 650.684 kb on - strand at 650.684 kb on - strand at 650.695 kb on + strand at 650.696 kb on - strand at 650.709 kb on + strand at 650.709 kb on + strand at 650.709 kb on + strand at 650.709 kb on + strand at 650.709 kb on + strand at 650.709 kb on + strand at 650.709 kb on + strand at 650.709 kb on + strand at 650.709 kb on + strand at 650.709 kb on + strand at 650.710 kb on - strand at 650.710 kb on - strand at 650.710 kb on - strand at 650.710 kb on - strand at 650.713 kb on + strand at 650.713 kb on + strand at 650.713 kb on + strand at 650.713 kb on + strand at 650.713 kb on + strand at 650.713 kb on + strand at 650.714 kb on - strand at 650.714 kb on - strand at 650.714 kb on - strand at 650.714 kb on - strand at 650.714 kb on - strand at 650.714 kb on - strand at 650.714 kb on - strand at 650.714 kb on - strand at 650.815 kb on + strand at 650.888 kb on + strand at 650.888 kb on + strand at 650.888 kb on + strand at 650.888 kb on + strand at 650.888 kb on + strand at 650.889 kb on - strand at 650.889 kb on - strand at 650.889 kb on - strand at 650.946 kb on + strand at 650.946 kb on + strand at 650.946 kb on + strand at 650.946 kb on + strand at 650.946 kb on + strand at 650.946 kb on + strand at 650.946 kb on + strand at 650.947 kb on - strand at 650.947 kb on - strand at 650.947 kb on - strand at 650.947 kb on - strand at 650.947 kb on - strand at 650.947 kb on - strand at 650.947 kb on - strand at 650.947 kb on - strand at 651.049 kb on + strand, within QEN71_RS02925 at 651.151 kb on + strand, within QEN71_RS02925
Per-strain Table
Position Strand Gene LocusTag Fraction Motility_outer_sample_with_outgrowth remove 648,358 + -0.4 648,358 + -0.8 648,359 - -0.0 648,409 + +2.1 648,409 + +0.0 648,409 + +0.1 648,409 + +1.6 648,410 - -1.2 648,423 + -0.4 648,423 + +1.1 648,424 - -0.1 648,424 - -0.1 648,424 - -0.8 648,424 - +0.5 648,450 + +1.0 648,454 - -0.5 648,454 - -1.1 648,468 + +0.5 648,468 + -0.2 648,468 + +0.0 648,468 + +0.2 648,468 + -0.3 648,468 + +0.2 648,469 - +0.3 648,473 - +1.0 648,507 + QEN71_RS02910 0.11 +0.4 648,508 - QEN71_RS02910 0.12 +0.4 648,616 + QEN71_RS02910 0.26 +0.4 648,617 - QEN71_RS02910 0.26 -0.0 648,639 + QEN71_RS02910 0.29 +0.3 648,639 + QEN71_RS02910 0.29 -0.1 648,639 + QEN71_RS02910 0.29 +0.0 648,639 + QEN71_RS02910 0.29 -0.3 648,639 + QEN71_RS02910 0.29 -0.5 648,639 + QEN71_RS02910 0.29 -0.6 648,640 - QEN71_RS02910 0.29 -0.1 648,640 - QEN71_RS02910 0.29 +0.2 648,640 - QEN71_RS02910 0.29 +0.3 648,640 - QEN71_RS02910 0.29 +0.1 648,640 - QEN71_RS02910 0.29 -1.0 648,645 + QEN71_RS02910 0.30 -1.8 648,645 + QEN71_RS02910 0.30 +0.4 648,645 + QEN71_RS02910 0.30 -0.2 648,646 - QEN71_RS02910 0.30 -0.0 648,646 - QEN71_RS02910 0.30 +1.3 648,904 - QEN71_RS02910 0.65 -0.2 649,101 + +1.5 649,101 + -0.2 649,101 + -1.5 649,102 - -0.1 649,102 - -0.2 649,102 - -0.1 649,102 - -0.7 649,183 + +0.3 649,183 + -0.5 649,184 - -0.1 649,184 - +0.3 649,201 + +0.3 649,201 + +2.1 649,201 + +0.3 649,201 + +2.1 649,202 - -0.1 649,202 - +0.6 649,202 - -0.8 649,202 - -0.9 649,222 + +0.4 649,222 + -0.0 649,223 - -0.7 649,223 - +0.5 649,224 + +1.4 649,224 + -0.1 649,225 - +0.2 649,225 - +0.0 649,269 + +0.4 649,298 + -1.1 649,298 + -0.6 649,298 + -0.9 649,298 + +0.3 649,299 - -0.0 649,299 - +0.9 649,299 - +0.2 649,299 - -0.7 649,299 - +0.3 649,299 - -0.1 649,302 + -0.4 649,332 - -0.4 649,516 - QEN71_RS02915 0.20 +0.3 649,597 - QEN71_RS02915 0.30 -0.5 649,680 + QEN71_RS02915 0.39 +0.1 649,681 - QEN71_RS02915 0.39 +0.3 649,681 - QEN71_RS02915 0.39 +0.3 649,681 - QEN71_RS02915 0.39 -0.1 649,681 - QEN71_RS02915 0.39 -0.9 649,855 - QEN71_RS02915 0.60 -1.8 649,855 - QEN71_RS02915 0.60 -0.3 649,855 - QEN71_RS02915 0.60 +0.9 649,855 - QEN71_RS02915 0.60 -0.8 649,929 + QEN71_RS02915 0.69 -0.1 649,930 - QEN71_RS02915 0.69 -0.6 649,930 - QEN71_RS02915 0.69 -1.0 649,930 - QEN71_RS02915 0.69 +0.1 649,930 - QEN71_RS02915 0.69 -0.0 649,930 - QEN71_RS02915 0.69 -1.7 650,215 + -0.2 650,215 + +0.7 650,215 + -0.1 650,215 + -0.6 650,215 + -1.2 650,215 + +0.1 650,215 + -1.0 650,216 - +0.3 650,216 - -1.2 650,216 - +0.8 650,216 - -0.2 650,216 - -1.4 650,216 - -2.2 650,216 - +0.1 650,246 + -0.2 650,246 + -0.3 650,246 + -0.2 650,246 + +0.1 650,246 + +0.3 650,246 + +0.2 650,246 + +0.5 650,247 - +0.1 650,247 - -1.1 650,247 - +0.5 650,247 - -1.3 650,247 - -0.6 650,247 - -0.6 650,432 - QEN71_RS02920 0.45 +0.9 650,432 - QEN71_RS02920 0.45 -0.7 650,437 + QEN71_RS02920 0.46 -0.1 650,524 + QEN71_RS02920 0.65 +1.0 650,524 + QEN71_RS02920 0.65 +3.0 650,683 + +0.1 650,683 + -1.0 650,684 - +1.1 650,684 - +0.1 650,684 - +0.7 650,684 - +1.7 650,684 - +0.5 650,684 - +0.2 650,684 - +0.1 650,684 - -0.2 650,684 - +1.1 650,684 - -1.6 650,695 + -2.0 650,696 - -0.6 650,709 + +0.3 650,709 + +0.6 650,709 + -0.5 650,709 + -2.2 650,709 + -1.5 650,709 + -0.5 650,709 + -0.3 650,709 + +0.0 650,709 + -0.3 650,709 + +0.4 650,710 - +0.5 650,710 - +0.1 650,710 - +0.1 650,710 - +0.4 650,713 + +0.1 650,713 + -0.5 650,713 + -0.0 650,713 + +0.9 650,713 + +2.3 650,713 + +1.1 650,714 - +0.9 650,714 - -1.6 650,714 - -0.5 650,714 - +1.8 650,714 - -0.2 650,714 - -0.3 650,714 - -0.6 650,714 - +0.4 650,815 + +1.4 650,888 + +0.4 650,888 + -0.5 650,888 + +0.3 650,888 + +0.1 650,888 + -0.1 650,889 - +1.1 650,889 - -0.6 650,889 - -0.2 650,946 + +1.2 650,946 + +0.5 650,946 + +0.8 650,946 + -0.0 650,946 + +0.2 650,946 + -1.1 650,946 + +0.2 650,947 - -0.1 650,947 - +0.6 650,947 - +0.4 650,947 - -0.2 650,947 - +0.1 650,947 - +0.0 650,947 - -1.3 650,947 - -0.2 651,049 + QEN71_RS02925 0.11 -1.6 651,151 + QEN71_RS02925 0.21 +2.2
Or see this region's nucleotide sequence