Experiment: Motility_outer_sample_with_outgrowth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS02560 and QEN71_RS02565 are separated by 74 nucleotides QEN71_RS02565 and QEN71_RS02570 overlap by 8 nucleotides QEN71_RS02570 and QEN71_RS02575 overlap by 4 nucleotides QEN71_RS02575 and QEN71_RS02580 are separated by 46 nucleotides
QEN71_RS02560: QEN71_RS02560 - S-formylglutathione hydrolase, at 574,739 to 575,584
_RS02560
QEN71_RS02565: QEN71_RS02565 - metal ABC transporter permease, at 575,659 to 576,450
_RS02565
QEN71_RS02570: QEN71_RS02570 - ABC transporter ATP-binding protein, at 576,443 to 577,384
_RS02570
QEN71_RS02575: QEN71_RS02575 - metal ABC transporter solute-binding protein, at 577,381 to 578,319
_RS02575
QEN71_RS02580: QEN71_RS02580 - Fur family transcriptional regulator, at 578,366 to 578,857
_RS02580
Position (kb) 576
577
578 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 575.507 kb on + strand at 575.507 kb on + strand at 575.519 kb on + strand at 575.519 kb on + strand at 575.520 kb on - strand at 575.605 kb on + strand at 575.605 kb on + strand at 575.628 kb on - strand at 575.628 kb on - strand at 575.649 kb on + strand at 575.655 kb on + strand at 575.655 kb on + strand at 575.655 kb on + strand at 575.655 kb on + strand at 575.655 kb on + strand at 575.656 kb on - strand at 575.656 kb on - strand at 575.656 kb on - strand at 575.656 kb on - strand at 575.656 kb on - strand at 575.696 kb on + strand at 575.746 kb on - strand, within QEN71_RS02565 at 575.747 kb on + strand, within QEN71_RS02565 at 575.747 kb on + strand, within QEN71_RS02565 at 575.748 kb on - strand, within QEN71_RS02565 at 575.748 kb on - strand, within QEN71_RS02565 at 575.878 kb on + strand, within QEN71_RS02565 at 575.878 kb on + strand, within QEN71_RS02565 at 575.878 kb on + strand, within QEN71_RS02565 at 575.878 kb on + strand, within QEN71_RS02565 at 576.128 kb on + strand, within QEN71_RS02565 at 576.128 kb on + strand, within QEN71_RS02565 at 576.129 kb on - strand, within QEN71_RS02565 at 576.129 kb on - strand, within QEN71_RS02565 at 576.374 kb on + strand at 576.440 kb on + strand at 576.441 kb on - strand at 576.441 kb on - strand at 576.651 kb on + strand, within QEN71_RS02570 at 576.651 kb on + strand, within QEN71_RS02570 at 576.651 kb on + strand, within QEN71_RS02570 at 576.652 kb on - strand, within QEN71_RS02570 at 576.652 kb on - strand, within QEN71_RS02570 at 576.707 kb on + strand, within QEN71_RS02570 at 576.723 kb on + strand, within QEN71_RS02570 at 576.723 kb on + strand, within QEN71_RS02570 at 576.723 kb on + strand, within QEN71_RS02570 at 576.723 kb on + strand, within QEN71_RS02570 at 576.723 kb on + strand, within QEN71_RS02570 at 576.723 kb on + strand, within QEN71_RS02570 at 576.724 kb on - strand, within QEN71_RS02570 at 576.724 kb on - strand, within QEN71_RS02570 at 576.724 kb on - strand, within QEN71_RS02570 at 576.724 kb on - strand, within QEN71_RS02570 at 577.120 kb on + strand, within QEN71_RS02570 at 577.120 kb on + strand, within QEN71_RS02570 at 577.120 kb on + strand, within QEN71_RS02570 at 577.120 kb on + strand, within QEN71_RS02570 at 577.120 kb on + strand, within QEN71_RS02570 at 577.120 kb on + strand, within QEN71_RS02570 at 577.120 kb on + strand, within QEN71_RS02570 at 577.121 kb on - strand, within QEN71_RS02570 at 577.121 kb on - strand, within QEN71_RS02570 at 577.121 kb on - strand, within QEN71_RS02570 at 577.121 kb on - strand, within QEN71_RS02570 at 577.121 kb on - strand, within QEN71_RS02570 at 577.121 kb on - strand, within QEN71_RS02570 at 577.121 kb on - strand, within QEN71_RS02570 at 577.122 kb on + strand, within QEN71_RS02570 at 577.122 kb on + strand, within QEN71_RS02570 at 577.122 kb on + strand, within QEN71_RS02570 at 577.122 kb on + strand, within QEN71_RS02570 at 577.122 kb on + strand, within QEN71_RS02570 at 577.123 kb on - strand, within QEN71_RS02570 at 577.123 kb on - strand, within QEN71_RS02570 at 577.123 kb on - strand, within QEN71_RS02570 at 577.123 kb on - strand, within QEN71_RS02570 at 577.123 kb on - strand, within QEN71_RS02570 at 577.123 kb on - strand, within QEN71_RS02570 at 577.123 kb on - strand, within QEN71_RS02570 at 577.123 kb on - strand, within QEN71_RS02570 at 577.481 kb on + strand, within QEN71_RS02575 at 577.481 kb on + strand, within QEN71_RS02575 at 577.481 kb on + strand, within QEN71_RS02575 at 577.482 kb on - strand, within QEN71_RS02575 at 577.482 kb on - strand, within QEN71_RS02575 at 577.525 kb on + strand, within QEN71_RS02575 at 577.526 kb on - strand, within QEN71_RS02575 at 577.526 kb on - strand, within QEN71_RS02575 at 577.587 kb on + strand, within QEN71_RS02575 at 577.587 kb on + strand, within QEN71_RS02575 at 577.587 kb on + strand, within QEN71_RS02575 at 577.587 kb on + strand, within QEN71_RS02575 at 577.588 kb on - strand, within QEN71_RS02575 at 577.588 kb on - strand, within QEN71_RS02575 at 577.589 kb on + strand, within QEN71_RS02575 at 577.590 kb on - strand, within QEN71_RS02575 at 577.590 kb on - strand, within QEN71_RS02575 at 577.590 kb on - strand, within QEN71_RS02575 at 577.590 kb on - strand, within QEN71_RS02575 at 577.590 kb on - strand, within QEN71_RS02575 at 577.590 kb on - strand, within QEN71_RS02575 at 577.590 kb on - strand, within QEN71_RS02575 at 577.727 kb on + strand, within QEN71_RS02575 at 577.728 kb on - strand, within QEN71_RS02575 at 577.728 kb on - strand, within QEN71_RS02575 at 577.770 kb on - strand, within QEN71_RS02575 at 577.844 kb on + strand, within QEN71_RS02575 at 577.844 kb on + strand, within QEN71_RS02575 at 577.844 kb on + strand, within QEN71_RS02575 at 577.844 kb on + strand, within QEN71_RS02575 at 577.844 kb on + strand, within QEN71_RS02575 at 577.844 kb on + strand, within QEN71_RS02575 at 577.845 kb on - strand, within QEN71_RS02575 at 577.845 kb on - strand, within QEN71_RS02575 at 577.845 kb on - strand, within QEN71_RS02575 at 577.845 kb on - strand, within QEN71_RS02575 at 577.925 kb on + strand, within QEN71_RS02575 at 577.925 kb on + strand, within QEN71_RS02575 at 578.036 kb on + strand, within QEN71_RS02575 at 578.037 kb on - strand, within QEN71_RS02575 at 578.037 kb on - strand, within QEN71_RS02575 at 578.037 kb on - strand, within QEN71_RS02575 at 578.051 kb on + strand, within QEN71_RS02575 at 578.190 kb on - strand, within QEN71_RS02575
Per-strain Table
Position Strand Gene LocusTag Fraction Motility_outer_sample_with_outgrowth remove 575,507 + -2.6 575,507 + +1.0 575,519 + +0.3 575,519 + +0.7 575,520 - +2.1 575,605 + +0.0 575,605 + -0.5 575,628 - -0.4 575,628 - +0.4 575,649 + +0.7 575,655 + -1.2 575,655 + -1.4 575,655 + -1.0 575,655 + +1.2 575,655 + +0.9 575,656 - -0.4 575,656 - +0.2 575,656 - +0.0 575,656 - -0.2 575,656 - -1.2 575,696 + -3.2 575,746 - QEN71_RS02565 0.11 -0.5 575,747 + QEN71_RS02565 0.11 +1.1 575,747 + QEN71_RS02565 0.11 -1.2 575,748 - QEN71_RS02565 0.11 -3.0 575,748 - QEN71_RS02565 0.11 -3.1 575,878 + QEN71_RS02565 0.28 -1.9 575,878 + QEN71_RS02565 0.28 +0.5 575,878 + QEN71_RS02565 0.28 -0.9 575,878 + QEN71_RS02565 0.28 -1.2 576,128 + QEN71_RS02565 0.59 -2.1 576,128 + QEN71_RS02565 0.59 -2.3 576,129 - QEN71_RS02565 0.59 -2.4 576,129 - QEN71_RS02565 0.59 -1.1 576,374 + -2.9 576,440 + -1.7 576,441 - -1.1 576,441 - -1.2 576,651 + QEN71_RS02570 0.22 -1.8 576,651 + QEN71_RS02570 0.22 -1.1 576,651 + QEN71_RS02570 0.22 -1.9 576,652 - QEN71_RS02570 0.22 -0.7 576,652 - QEN71_RS02570 0.22 -2.5 576,707 + QEN71_RS02570 0.28 +0.1 576,723 + QEN71_RS02570 0.30 -1.6 576,723 + QEN71_RS02570 0.30 -0.2 576,723 + QEN71_RS02570 0.30 -0.9 576,723 + QEN71_RS02570 0.30 +0.1 576,723 + QEN71_RS02570 0.30 -3.1 576,723 + QEN71_RS02570 0.30 -1.7 576,724 - QEN71_RS02570 0.30 -0.7 576,724 - QEN71_RS02570 0.30 -1.4 576,724 - QEN71_RS02570 0.30 -1.5 576,724 - QEN71_RS02570 0.30 -1.4 577,120 + QEN71_RS02570 0.72 -2.2 577,120 + QEN71_RS02570 0.72 -1.8 577,120 + QEN71_RS02570 0.72 -2.7 577,120 + QEN71_RS02570 0.72 -2.7 577,120 + QEN71_RS02570 0.72 -2.2 577,120 + QEN71_RS02570 0.72 -0.2 577,120 + QEN71_RS02570 0.72 -2.2 577,121 - QEN71_RS02570 0.72 -1.8 577,121 - QEN71_RS02570 0.72 -3.0 577,121 - QEN71_RS02570 0.72 -0.9 577,121 - QEN71_RS02570 0.72 -1.6 577,121 - QEN71_RS02570 0.72 -1.7 577,121 - QEN71_RS02570 0.72 -3.5 577,121 - QEN71_RS02570 0.72 -3.2 577,122 + QEN71_RS02570 0.72 -3.0 577,122 + QEN71_RS02570 0.72 -2.2 577,122 + QEN71_RS02570 0.72 -0.9 577,122 + QEN71_RS02570 0.72 -1.7 577,122 + QEN71_RS02570 0.72 -2.9 577,123 - QEN71_RS02570 0.72 -1.8 577,123 - QEN71_RS02570 0.72 -0.2 577,123 - QEN71_RS02570 0.72 -2.6 577,123 - QEN71_RS02570 0.72 -1.7 577,123 - QEN71_RS02570 0.72 -3.3 577,123 - QEN71_RS02570 0.72 -3.5 577,123 - QEN71_RS02570 0.72 -0.9 577,123 - QEN71_RS02570 0.72 -2.7 577,481 + QEN71_RS02575 0.11 -4.9 577,481 + QEN71_RS02575 0.11 -3.2 577,481 + QEN71_RS02575 0.11 -3.2 577,482 - QEN71_RS02575 0.11 -2.4 577,482 - QEN71_RS02575 0.11 -2.0 577,525 + QEN71_RS02575 0.15 +0.2 577,526 - QEN71_RS02575 0.15 -1.8 577,526 - QEN71_RS02575 0.15 -0.7 577,587 + QEN71_RS02575 0.22 -2.6 577,587 + QEN71_RS02575 0.22 -1.6 577,587 + QEN71_RS02575 0.22 -1.4 577,587 + QEN71_RS02575 0.22 -0.9 577,588 - QEN71_RS02575 0.22 -1.6 577,588 - QEN71_RS02575 0.22 -1.4 577,589 + QEN71_RS02575 0.22 -0.5 577,590 - QEN71_RS02575 0.22 -3.6 577,590 - QEN71_RS02575 0.22 -1.2 577,590 - QEN71_RS02575 0.22 -0.5 577,590 - QEN71_RS02575 0.22 -1.0 577,590 - QEN71_RS02575 0.22 -1.1 577,590 - QEN71_RS02575 0.22 -2.3 577,590 - QEN71_RS02575 0.22 -1.2 577,727 + QEN71_RS02575 0.37 -0.5 577,728 - QEN71_RS02575 0.37 -2.4 577,728 - QEN71_RS02575 0.37 -0.5 577,770 - QEN71_RS02575 0.41 -0.9 577,844 + QEN71_RS02575 0.49 -1.9 577,844 + QEN71_RS02575 0.49 -2.5 577,844 + QEN71_RS02575 0.49 -0.1 577,844 + QEN71_RS02575 0.49 -1.2 577,844 + QEN71_RS02575 0.49 -2.4 577,844 + QEN71_RS02575 0.49 -2.1 577,845 - QEN71_RS02575 0.49 -1.7 577,845 - QEN71_RS02575 0.49 -1.9 577,845 - QEN71_RS02575 0.49 -1.1 577,845 - QEN71_RS02575 0.49 -1.7 577,925 + QEN71_RS02575 0.58 -3.7 577,925 + QEN71_RS02575 0.58 -0.9 578,036 + QEN71_RS02575 0.70 -3.3 578,037 - QEN71_RS02575 0.70 -1.6 578,037 - QEN71_RS02575 0.70 +0.1 578,037 - QEN71_RS02575 0.70 -0.7 578,051 + QEN71_RS02575 0.71 -2.4 578,190 - QEN71_RS02575 0.86 -3.2
Or see this region's nucleotide sequence