Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS02345

Experiment: Motility_outer_sample_with_outgrowth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS02340 and QEN71_RS02345 are separated by 172 nucleotidesQEN71_RS02345 and QEN71_RS02350 are separated by 55 nucleotides QEN71_RS02340: QEN71_RS02340 - recombination regulator RecX, at 524,695 to 525,519 _RS02340 QEN71_RS02345: QEN71_RS02345 - DUF2889 domain-containing protein, at 525,692 to 526,423 _RS02345 QEN71_RS02350: QEN71_RS02350 - ADP-forming succinate--CoA ligase subunit beta, at 526,479 to 527,648 _RS02350 Position (kb) 525 526 527Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2 3at 524.699 kb on + strandat 524.699 kb on + strandat 524.700 kb on - strandat 524.700 kb on - strandat 524.700 kb on - strandat 524.746 kb on - strandat 524.746 kb on - strandat 524.829 kb on + strand, within QEN71_RS02340at 524.829 kb on + strand, within QEN71_RS02340at 524.829 kb on + strand, within QEN71_RS02340at 524.829 kb on + strand, within QEN71_RS02340at 524.829 kb on + strand, within QEN71_RS02340at 524.830 kb on - strand, within QEN71_RS02340at 524.830 kb on - strand, within QEN71_RS02340at 524.830 kb on - strand, within QEN71_RS02340at 524.830 kb on - strand, within QEN71_RS02340at 524.830 kb on - strand, within QEN71_RS02340at 524.830 kb on - strand, within QEN71_RS02340at 524.848 kb on + strand, within QEN71_RS02340at 524.848 kb on + strand, within QEN71_RS02340at 524.849 kb on - strand, within QEN71_RS02340at 524.998 kb on + strand, within QEN71_RS02340at 524.998 kb on + strand, within QEN71_RS02340at 524.998 kb on + strand, within QEN71_RS02340at 524.998 kb on + strand, within QEN71_RS02340at 524.998 kb on + strand, within QEN71_RS02340at 524.998 kb on + strand, within QEN71_RS02340at 524.998 kb on + strand, within QEN71_RS02340at 524.998 kb on + strand, within QEN71_RS02340at 524.998 kb on + strand, within QEN71_RS02340at 524.999 kb on - strand, within QEN71_RS02340at 524.999 kb on - strand, within QEN71_RS02340at 524.999 kb on - strand, within QEN71_RS02340at 524.999 kb on - strand, within QEN71_RS02340at 525.072 kb on - strand, within QEN71_RS02340at 525.072 kb on - strand, within QEN71_RS02340at 525.072 kb on - strand, within QEN71_RS02340at 525.100 kb on + strand, within QEN71_RS02340at 525.100 kb on + strand, within QEN71_RS02340at 525.101 kb on - strand, within QEN71_RS02340at 525.101 kb on - strand, within QEN71_RS02340at 525.101 kb on - strand, within QEN71_RS02340at 525.101 kb on - strand, within QEN71_RS02340at 525.119 kb on - strand, within QEN71_RS02340at 525.142 kb on - strand, within QEN71_RS02340at 525.517 kb on + strandat 525.517 kb on + strandat 525.517 kb on + strandat 525.517 kb on + strandat 525.517 kb on + strandat 525.517 kb on + strandat 525.517 kb on + strandat 525.518 kb on - strandat 525.518 kb on - strandat 525.641 kb on + strandat 525.641 kb on + strandat 525.641 kb on + strandat 525.641 kb on + strandat 525.642 kb on - strandat 525.642 kb on - strandat 525.648 kb on + strandat 525.648 kb on + strandat 525.648 kb on + strandat 525.648 kb on + strandat 525.649 kb on - strandat 525.649 kb on - strandat 525.649 kb on - strandat 525.649 kb on - strandat 525.649 kb on - strandat 525.649 kb on - strandat 525.653 kb on + strandat 525.670 kb on + strandat 525.670 kb on + strandat 525.670 kb on + strandat 525.670 kb on + strandat 525.671 kb on - strandat 525.755 kb on + strandat 525.755 kb on + strandat 525.755 kb on + strandat 525.755 kb on + strandat 525.755 kb on + strandat 525.755 kb on + strandat 525.756 kb on - strandat 525.756 kb on - strandat 525.756 kb on - strandat 525.756 kb on - strandat 525.756 kb on - strandat 525.756 kb on - strandat 525.756 kb on - strandat 525.756 kb on - strandat 525.756 kb on - strandat 525.756 kb on - strandat 525.756 kb on - strandat 525.972 kb on - strand, within QEN71_RS02345at 526.331 kb on + strand, within QEN71_RS02345at 526.494 kb on + strandat 526.494 kb on + strandat 526.495 kb on - strandat 526.534 kb on + strandat 526.803 kb on + strand, within QEN71_RS02350at 526.803 kb on + strand, within QEN71_RS02350at 526.803 kb on + strand, within QEN71_RS02350at 526.803 kb on + strand, within QEN71_RS02350at 526.803 kb on + strand, within QEN71_RS02350at 526.803 kb on + strand, within QEN71_RS02350at 526.803 kb on + strand, within QEN71_RS02350at 526.803 kb on + strand, within QEN71_RS02350at 526.803 kb on + strand, within QEN71_RS02350at 526.803 kb on + strand, within QEN71_RS02350at 526.803 kb on + strand, within QEN71_RS02350at 526.803 kb on + strand, within QEN71_RS02350at 526.803 kb on + strand, within QEN71_RS02350at 526.803 kb on + strand, within QEN71_RS02350at 526.803 kb on + strand, within QEN71_RS02350at 526.803 kb on + strand, within QEN71_RS02350at 526.804 kb on - strand, within QEN71_RS02350at 526.804 kb on - strand, within QEN71_RS02350at 526.804 kb on - strand, within QEN71_RS02350at 526.804 kb on - strand, within QEN71_RS02350at 526.804 kb on - strand, within QEN71_RS02350at 526.804 kb on - strand, within QEN71_RS02350at 526.804 kb on - strand, within QEN71_RS02350at 526.804 kb on - strand, within QEN71_RS02350at 526.804 kb on - strand, within QEN71_RS02350at 526.804 kb on - strand, within QEN71_RS02350at 526.804 kb on - strand, within QEN71_RS02350at 526.804 kb on - strand, within QEN71_RS02350at 526.804 kb on - strand, within QEN71_RS02350at 526.804 kb on - strand, within QEN71_RS02350at 526.804 kb on - strand, within QEN71_RS02350at 526.804 kb on - strand, within QEN71_RS02350at 526.804 kb on - strand, within QEN71_RS02350at 527.031 kb on + strand, within QEN71_RS02350at 527.031 kb on + strand, within QEN71_RS02350at 527.031 kb on + strand, within QEN71_RS02350at 527.031 kb on + strand, within QEN71_RS02350at 527.031 kb on + strand, within QEN71_RS02350at 527.031 kb on + strand, within QEN71_RS02350at 527.032 kb on - strand, within QEN71_RS02350at 527.032 kb on - strand, within QEN71_RS02350at 527.032 kb on - strand, within QEN71_RS02350at 527.032 kb on - strand, within QEN71_RS02350at 527.032 kb on - strand, within QEN71_RS02350at 527.032 kb on - strand, within QEN71_RS02350at 527.032 kb on - strand, within QEN71_RS02350at 527.032 kb on - strand, within QEN71_RS02350at 527.192 kb on - strand, within QEN71_RS02350at 527.232 kb on + strand, within QEN71_RS02350at 527.232 kb on + strand, within QEN71_RS02350at 527.232 kb on + strand, within QEN71_RS02350at 527.232 kb on + strand, within QEN71_RS02350at 527.232 kb on + strand, within QEN71_RS02350at 527.232 kb on + strand, within QEN71_RS02350at 527.232 kb on + strand, within QEN71_RS02350at 527.232 kb on + strand, within QEN71_RS02350at 527.232 kb on + strand, within QEN71_RS02350at 527.232 kb on + strand, within QEN71_RS02350at 527.232 kb on + strand, within QEN71_RS02350at 527.233 kb on - strand, within QEN71_RS02350at 527.233 kb on - strand, within QEN71_RS02350at 527.233 kb on - strand, within QEN71_RS02350at 527.233 kb on - strand, within QEN71_RS02350at 527.233 kb on - strand, within QEN71_RS02350at 527.233 kb on - strand, within QEN71_RS02350at 527.233 kb on - strand, within QEN71_RS02350at 527.233 kb on - strand, within QEN71_RS02350at 527.357 kb on + strand, within QEN71_RS02350at 527.358 kb on - strand, within QEN71_RS02350at 527.358 kb on - strand, within QEN71_RS02350at 527.358 kb on - strand, within QEN71_RS02350

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Per-strain Table

Position Strand Gene LocusTag Fraction Motility_outer_sample_with_outgrowth
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524,699 + +0.0
524,699 + -0.5
524,700 - +0.7
524,700 - +0.1
524,700 - -0.5
524,746 - -0.7
524,746 - -0.9
524,829 + QEN71_RS02340 0.16 -1.3
524,829 + QEN71_RS02340 0.16 -2.0
524,829 + QEN71_RS02340 0.16 -0.4
524,829 + QEN71_RS02340 0.16 +1.3
524,829 + QEN71_RS02340 0.16 +0.2
524,830 - QEN71_RS02340 0.16 -0.7
524,830 - QEN71_RS02340 0.16 -1.5
524,830 - QEN71_RS02340 0.16 -1.2
524,830 - QEN71_RS02340 0.16 -2.3
524,830 - QEN71_RS02340 0.16 -0.4
524,830 - QEN71_RS02340 0.16 -0.7
524,848 + QEN71_RS02340 0.19 -0.9
524,848 + QEN71_RS02340 0.19 -1.5
524,849 - QEN71_RS02340 0.19 -0.9
524,998 + QEN71_RS02340 0.37 -1.3
524,998 + QEN71_RS02340 0.37 -0.6
524,998 + QEN71_RS02340 0.37 -1.8
524,998 + QEN71_RS02340 0.37 +0.4
524,998 + QEN71_RS02340 0.37 +0.2
524,998 + QEN71_RS02340 0.37 -3.1
524,998 + QEN71_RS02340 0.37 -1.1
524,998 + QEN71_RS02340 0.37 -1.4
524,998 + QEN71_RS02340 0.37 -0.3
524,999 - QEN71_RS02340 0.37 +2.9
524,999 - QEN71_RS02340 0.37 -1.3
524,999 - QEN71_RS02340 0.37 -0.7
524,999 - QEN71_RS02340 0.37 -0.8
525,072 - QEN71_RS02340 0.46 +0.4
525,072 - QEN71_RS02340 0.46 -0.4
525,072 - QEN71_RS02340 0.46 -0.3
525,100 + QEN71_RS02340 0.49 -1.2
525,100 + QEN71_RS02340 0.49 -0.8
525,101 - QEN71_RS02340 0.49 +1.0
525,101 - QEN71_RS02340 0.49 -0.9
525,101 - QEN71_RS02340 0.49 +0.8
525,101 - QEN71_RS02340 0.49 +0.7
525,119 - QEN71_RS02340 0.51 -0.6
525,142 - QEN71_RS02340 0.54 +0.2
525,517 + -0.5
525,517 + +1.1
525,517 + +0.9
525,517 + +0.8
525,517 + -1.4
525,517 + +0.3
525,517 + -0.8
525,518 - -1.3
525,518 - +1.1
525,641 + -2.6
525,641 + +0.1
525,641 + +0.5
525,641 + -1.4
525,642 - +1.1
525,642 - -0.4
525,648 + -0.7
525,648 + +0.8
525,648 + +1.1
525,648 + -0.5
525,649 - -0.7
525,649 - -1.9
525,649 - -1.1
525,649 - -0.3
525,649 - -0.3
525,649 - -0.3
525,653 + +1.2
525,670 + -0.6
525,670 + +1.4
525,670 + -1.6
525,670 + +2.4
525,671 - -3.2
525,755 + +0.4
525,755 + -0.3
525,755 + -0.3
525,755 + -1.1
525,755 + +0.4
525,755 + -0.2
525,756 - -2.3
525,756 - -4.2
525,756 - -3.4
525,756 - -2.6
525,756 - -2.7
525,756 - -3.7
525,756 - -4.0
525,756 - -4.5
525,756 - -2.6
525,756 - -3.3
525,756 - -5.1
525,972 - QEN71_RS02345 0.38 -4.3
526,331 + QEN71_RS02345 0.87 -1.3
526,494 + -5.0
526,494 + +0.1
526,495 - -3.2
526,534 + -3.6
526,803 + QEN71_RS02350 0.28 -2.2
526,803 + QEN71_RS02350 0.28 -3.4
526,803 + QEN71_RS02350 0.28 -3.7
526,803 + QEN71_RS02350 0.28 -2.9
526,803 + QEN71_RS02350 0.28 -3.8
526,803 + QEN71_RS02350 0.28 -5.6
526,803 + QEN71_RS02350 0.28 -3.6
526,803 + QEN71_RS02350 0.28 -4.6
526,803 + QEN71_RS02350 0.28 -3.0
526,803 + QEN71_RS02350 0.28 -4.3
526,803 + QEN71_RS02350 0.28 -1.6
526,803 + QEN71_RS02350 0.28 -1.4
526,803 + QEN71_RS02350 0.28 -2.1
526,803 + QEN71_RS02350 0.28 -4.0
526,803 + QEN71_RS02350 0.28 -3.9
526,803 + QEN71_RS02350 0.28 -3.2
526,804 - QEN71_RS02350 0.28 -1.3
526,804 - QEN71_RS02350 0.28 -3.3
526,804 - QEN71_RS02350 0.28 -3.8
526,804 - QEN71_RS02350 0.28 -3.1
526,804 - QEN71_RS02350 0.28 -3.3
526,804 - QEN71_RS02350 0.28 -3.0
526,804 - QEN71_RS02350 0.28 -3.3
526,804 - QEN71_RS02350 0.28 -3.2
526,804 - QEN71_RS02350 0.28 -2.0
526,804 - QEN71_RS02350 0.28 -4.3
526,804 - QEN71_RS02350 0.28 -3.8
526,804 - QEN71_RS02350 0.28 -4.1
526,804 - QEN71_RS02350 0.28 -2.2
526,804 - QEN71_RS02350 0.28 -3.9
526,804 - QEN71_RS02350 0.28 -4.3
526,804 - QEN71_RS02350 0.28 -6.2
526,804 - QEN71_RS02350 0.28 -3.2
527,031 + QEN71_RS02350 0.47 -3.7
527,031 + QEN71_RS02350 0.47 -4.0
527,031 + QEN71_RS02350 0.47 -4.0
527,031 + QEN71_RS02350 0.47 -4.3
527,031 + QEN71_RS02350 0.47 -3.6
527,031 + QEN71_RS02350 0.47 -1.9
527,032 - QEN71_RS02350 0.47 -2.8
527,032 - QEN71_RS02350 0.47 -4.5
527,032 - QEN71_RS02350 0.47 -3.4
527,032 - QEN71_RS02350 0.47 -3.3
527,032 - QEN71_RS02350 0.47 -4.2
527,032 - QEN71_RS02350 0.47 -2.4
527,032 - QEN71_RS02350 0.47 -2.7
527,032 - QEN71_RS02350 0.47 -2.5
527,192 - QEN71_RS02350 0.61 -3.1
527,232 + QEN71_RS02350 0.64 +0.1
527,232 + QEN71_RS02350 0.64 -3.5
527,232 + QEN71_RS02350 0.64 -3.4
527,232 + QEN71_RS02350 0.64 -5.2
527,232 + QEN71_RS02350 0.64 -5.9
527,232 + QEN71_RS02350 0.64 -3.6
527,232 + QEN71_RS02350 0.64 -3.1
527,232 + QEN71_RS02350 0.64 -4.5
527,232 + QEN71_RS02350 0.64 -3.6
527,232 + QEN71_RS02350 0.64 -5.5
527,232 + QEN71_RS02350 0.64 -5.1
527,233 - QEN71_RS02350 0.64 -5.1
527,233 - QEN71_RS02350 0.64 -2.3
527,233 - QEN71_RS02350 0.64 -2.8
527,233 - QEN71_RS02350 0.64 -3.8
527,233 - QEN71_RS02350 0.64 -1.8
527,233 - QEN71_RS02350 0.64 -4.7
527,233 - QEN71_RS02350 0.64 -2.5
527,233 - QEN71_RS02350 0.64 -3.4
527,357 + QEN71_RS02350 0.75 -3.7
527,358 - QEN71_RS02350 0.75 -2.5
527,358 - QEN71_RS02350 0.75 -3.0
527,358 - QEN71_RS02350 0.75 -3.2

Or see this region's nucleotide sequence