Experiment: Motility_outer_sample_with_outgrowth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS02225 and QEN71_RS02230 are separated by 102 nucleotides QEN71_RS02230 and QEN71_RS02235 are separated by 137 nucleotides
QEN71_RS02225: QEN71_RS02225 - HAD family hydrolase, at 500,030 to 500,716
_RS02225
QEN71_RS02230: QEN71_RS02230 - glycerol kinase GlpK, at 500,819 to 502,318
_RS02230
QEN71_RS02235: QEN71_RS02235 - glycerol-3-phosphate dehydrogenase, at 502,456 to 503,991
_RS02235
Position (kb) 500
501
502
503 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 499.923 kb on + strand at 499.923 kb on + strand at 500.003 kb on - strand at 500.003 kb on - strand at 500.003 kb on - strand at 500.031 kb on + strand at 500.031 kb on + strand at 500.031 kb on + strand at 500.031 kb on + strand at 500.031 kb on + strand at 500.031 kb on + strand at 500.031 kb on + strand at 500.031 kb on + strand at 500.032 kb on - strand at 500.032 kb on - strand at 500.032 kb on - strand at 500.114 kb on - strand, within QEN71_RS02225 at 500.114 kb on - strand, within QEN71_RS02225 at 500.114 kb on - strand, within QEN71_RS02225 at 500.114 kb on - strand, within QEN71_RS02225 at 500.116 kb on + strand, within QEN71_RS02225 at 500.116 kb on + strand, within QEN71_RS02225 at 500.117 kb on - strand, within QEN71_RS02225 at 500.117 kb on - strand, within QEN71_RS02225 at 500.142 kb on + strand, within QEN71_RS02225 at 500.143 kb on - strand, within QEN71_RS02225 at 500.155 kb on + strand, within QEN71_RS02225 at 500.155 kb on + strand, within QEN71_RS02225 at 500.155 kb on + strand, within QEN71_RS02225 at 500.155 kb on + strand, within QEN71_RS02225 at 500.155 kb on + strand, within QEN71_RS02225 at 500.156 kb on - strand, within QEN71_RS02225 at 500.161 kb on + strand, within QEN71_RS02225 at 500.161 kb on + strand, within QEN71_RS02225 at 500.161 kb on + strand, within QEN71_RS02225 at 500.179 kb on + strand, within QEN71_RS02225 at 500.179 kb on + strand, within QEN71_RS02225 at 500.179 kb on + strand, within QEN71_RS02225 at 500.179 kb on + strand, within QEN71_RS02225 at 500.179 kb on + strand, within QEN71_RS02225 at 500.179 kb on + strand, within QEN71_RS02225 at 500.180 kb on - strand, within QEN71_RS02225 at 500.180 kb on - strand, within QEN71_RS02225 at 500.180 kb on - strand, within QEN71_RS02225 at 500.180 kb on - strand, within QEN71_RS02225 at 500.283 kb on + strand, within QEN71_RS02225 at 500.283 kb on + strand, within QEN71_RS02225 at 500.283 kb on + strand, within QEN71_RS02225 at 500.283 kb on + strand, within QEN71_RS02225 at 500.284 kb on - strand, within QEN71_RS02225 at 500.284 kb on - strand, within QEN71_RS02225 at 500.284 kb on - strand, within QEN71_RS02225 at 500.466 kb on - strand, within QEN71_RS02225 at 500.775 kb on + strand at 500.775 kb on + strand at 500.775 kb on + strand at 500.775 kb on + strand at 500.775 kb on + strand at 500.775 kb on + strand at 500.775 kb on + strand at 500.775 kb on + strand at 500.775 kb on + strand at 500.775 kb on + strand at 500.775 kb on + strand at 500.775 kb on + strand at 500.775 kb on + strand at 500.775 kb on + strand at 500.775 kb on + strand at 500.776 kb on - strand at 500.776 kb on - strand at 500.776 kb on - strand at 500.776 kb on - strand at 500.776 kb on - strand at 500.776 kb on - strand at 500.776 kb on - strand at 500.776 kb on - strand at 500.776 kb on - strand at 500.776 kb on - strand at 500.776 kb on - strand at 500.776 kb on - strand at 500.776 kb on - strand at 500.776 kb on - strand at 500.776 kb on - strand at 500.964 kb on + strand at 500.988 kb on + strand, within QEN71_RS02230 at 500.988 kb on + strand, within QEN71_RS02230 at 500.988 kb on + strand, within QEN71_RS02230 at 500.988 kb on + strand, within QEN71_RS02230 at 500.988 kb on + strand, within QEN71_RS02230 at 500.988 kb on + strand, within QEN71_RS02230 at 500.989 kb on - strand, within QEN71_RS02230 at 501.166 kb on - strand, within QEN71_RS02230 at 501.294 kb on + strand, within QEN71_RS02230 at 501.294 kb on + strand, within QEN71_RS02230 at 501.294 kb on + strand, within QEN71_RS02230 at 501.294 kb on + strand, within QEN71_RS02230 at 501.295 kb on - strand, within QEN71_RS02230 at 501.295 kb on - strand, within QEN71_RS02230 at 501.295 kb on - strand, within QEN71_RS02230 at 501.295 kb on - strand, within QEN71_RS02230 at 501.423 kb on + strand, within QEN71_RS02230 at 501.423 kb on + strand, within QEN71_RS02230 at 501.424 kb on - strand, within QEN71_RS02230 at 501.424 kb on - strand, within QEN71_RS02230 at 501.424 kb on - strand, within QEN71_RS02230 at 501.424 kb on - strand, within QEN71_RS02230 at 501.424 kb on - strand, within QEN71_RS02230 at 501.528 kb on + strand, within QEN71_RS02230 at 501.528 kb on + strand, within QEN71_RS02230 at 501.529 kb on - strand, within QEN71_RS02230 at 501.529 kb on - strand, within QEN71_RS02230 at 501.529 kb on - strand, within QEN71_RS02230 at 501.529 kb on - strand, within QEN71_RS02230 at 501.648 kb on + strand, within QEN71_RS02230 at 501.648 kb on + strand, within QEN71_RS02230 at 501.648 kb on + strand, within QEN71_RS02230 at 501.649 kb on - strand, within QEN71_RS02230 at 501.649 kb on - strand, within QEN71_RS02230 at 501.649 kb on - strand, within QEN71_RS02230 at 501.649 kb on - strand, within QEN71_RS02230 at 501.649 kb on - strand, within QEN71_RS02230 at 501.649 kb on - strand, within QEN71_RS02230 at 501.915 kb on + strand, within QEN71_RS02230 at 501.916 kb on - strand, within QEN71_RS02230 at 502.026 kb on + strand, within QEN71_RS02230 at 502.026 kb on + strand, within QEN71_RS02230 at 502.027 kb on - strand, within QEN71_RS02230 at 502.027 kb on - strand, within QEN71_RS02230 at 502.027 kb on - strand, within QEN71_RS02230 at 502.027 kb on - strand, within QEN71_RS02230 at 502.203 kb on + strand at 502.203 kb on + strand at 502.203 kb on + strand at 502.203 kb on + strand at 502.204 kb on - strand at 502.204 kb on - strand at 502.204 kb on - strand at 502.292 kb on + strand at 502.305 kb on + strand at 502.305 kb on + strand at 502.305 kb on + strand at 502.305 kb on + strand at 502.305 kb on + strand at 502.305 kb on + strand at 502.305 kb on + strand at 502.305 kb on + strand at 502.305 kb on + strand at 502.305 kb on + strand at 502.305 kb on + strand at 502.306 kb on - strand at 502.306 kb on - strand at 502.306 kb on - strand at 502.306 kb on - strand at 502.306 kb on - strand at 502.306 kb on - strand at 502.306 kb on - strand at 502.306 kb on - strand at 502.451 kb on + strand at 502.452 kb on - strand at 502.452 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Motility_outer_sample_with_outgrowth remove 499,923 + +0.5 499,923 + +1.1 500,003 - -0.7 500,003 - +0.8 500,003 - -0.2 500,031 + +0.0 500,031 + +0.6 500,031 + +1.4 500,031 + +0.4 500,031 + -0.2 500,031 + -0.7 500,031 + -0.5 500,031 + -0.3 500,032 - -1.9 500,032 - -0.8 500,032 - +0.3 500,114 - QEN71_RS02225 0.12 -1.1 500,114 - QEN71_RS02225 0.12 -0.4 500,114 - QEN71_RS02225 0.12 +0.1 500,114 - QEN71_RS02225 0.12 +0.1 500,116 + QEN71_RS02225 0.13 -2.2 500,116 + QEN71_RS02225 0.13 +1.1 500,117 - QEN71_RS02225 0.13 +0.4 500,117 - QEN71_RS02225 0.13 -0.5 500,142 + QEN71_RS02225 0.16 +1.7 500,143 - QEN71_RS02225 0.16 -0.8 500,155 + QEN71_RS02225 0.18 +0.7 500,155 + QEN71_RS02225 0.18 +2.4 500,155 + QEN71_RS02225 0.18 +0.2 500,155 + QEN71_RS02225 0.18 -0.4 500,155 + QEN71_RS02225 0.18 +0.5 500,156 - QEN71_RS02225 0.18 -0.8 500,161 + QEN71_RS02225 0.19 -0.4 500,161 + QEN71_RS02225 0.19 -0.4 500,161 + QEN71_RS02225 0.19 -0.7 500,179 + QEN71_RS02225 0.22 +1.0 500,179 + QEN71_RS02225 0.22 +0.1 500,179 + QEN71_RS02225 0.22 -1.8 500,179 + QEN71_RS02225 0.22 -0.3 500,179 + QEN71_RS02225 0.22 +0.6 500,179 + QEN71_RS02225 0.22 +0.1 500,180 - QEN71_RS02225 0.22 -0.1 500,180 - QEN71_RS02225 0.22 -0.6 500,180 - QEN71_RS02225 0.22 -0.6 500,180 - QEN71_RS02225 0.22 -1.8 500,283 + QEN71_RS02225 0.37 -1.7 500,283 + QEN71_RS02225 0.37 -0.1 500,283 + QEN71_RS02225 0.37 -1.6 500,283 + QEN71_RS02225 0.37 -0.3 500,284 - QEN71_RS02225 0.37 +0.9 500,284 - QEN71_RS02225 0.37 +0.1 500,284 - QEN71_RS02225 0.37 -0.0 500,466 - QEN71_RS02225 0.63 -0.5 500,775 + +0.8 500,775 + +1.1 500,775 + +0.1 500,775 + -0.1 500,775 + +0.1 500,775 + +0.5 500,775 + -0.5 500,775 + +0.2 500,775 + +1.0 500,775 + -0.7 500,775 + -0.0 500,775 + +0.7 500,775 + -0.3 500,775 + -0.9 500,775 + +0.1 500,776 - +0.2 500,776 - -1.1 500,776 - +0.2 500,776 - -0.1 500,776 - -0.8 500,776 - -1.1 500,776 - -0.7 500,776 - -0.6 500,776 - +1.1 500,776 - -0.9 500,776 - +0.0 500,776 - +1.1 500,776 - -2.8 500,776 - +1.3 500,776 - +1.7 500,964 + -0.5 500,988 + QEN71_RS02230 0.11 +0.1 500,988 + QEN71_RS02230 0.11 -2.4 500,988 + QEN71_RS02230 0.11 -1.9 500,988 + QEN71_RS02230 0.11 -0.5 500,988 + QEN71_RS02230 0.11 -2.0 500,988 + QEN71_RS02230 0.11 -0.7 500,989 - QEN71_RS02230 0.11 -1.3 501,166 - QEN71_RS02230 0.23 -2.7 501,294 + QEN71_RS02230 0.32 +0.1 501,294 + QEN71_RS02230 0.32 -2.1 501,294 + QEN71_RS02230 0.32 -0.9 501,294 + QEN71_RS02230 0.32 -0.7 501,295 - QEN71_RS02230 0.32 -3.0 501,295 - QEN71_RS02230 0.32 +0.1 501,295 - QEN71_RS02230 0.32 -2.1 501,295 - QEN71_RS02230 0.32 -1.5 501,423 + QEN71_RS02230 0.40 -1.1 501,423 + QEN71_RS02230 0.40 -0.5 501,424 - QEN71_RS02230 0.40 -1.3 501,424 - QEN71_RS02230 0.40 -1.3 501,424 - QEN71_RS02230 0.40 -2.6 501,424 - QEN71_RS02230 0.40 -0.7 501,424 - QEN71_RS02230 0.40 -1.9 501,528 + QEN71_RS02230 0.47 -1.6 501,528 + QEN71_RS02230 0.47 -0.9 501,529 - QEN71_RS02230 0.47 -2.4 501,529 - QEN71_RS02230 0.47 +0.1 501,529 - QEN71_RS02230 0.47 -3.1 501,529 - QEN71_RS02230 0.47 -0.3 501,648 + QEN71_RS02230 0.55 -2.4 501,648 + QEN71_RS02230 0.55 -3.7 501,648 + QEN71_RS02230 0.55 -1.5 501,649 - QEN71_RS02230 0.55 -1.5 501,649 - QEN71_RS02230 0.55 -1.3 501,649 - QEN71_RS02230 0.55 -1.8 501,649 - QEN71_RS02230 0.55 -1.3 501,649 - QEN71_RS02230 0.55 -0.5 501,649 - QEN71_RS02230 0.55 -1.5 501,915 + QEN71_RS02230 0.73 -1.1 501,916 - QEN71_RS02230 0.73 -1.4 502,026 + QEN71_RS02230 0.80 -2.4 502,026 + QEN71_RS02230 0.80 -0.3 502,027 - QEN71_RS02230 0.81 -0.3 502,027 - QEN71_RS02230 0.81 -0.6 502,027 - QEN71_RS02230 0.81 -1.6 502,027 - QEN71_RS02230 0.81 +0.6 502,203 + +0.1 502,203 + -2.1 502,203 + -2.3 502,203 + -0.5 502,204 - -1.5 502,204 - -2.3 502,204 - +0.3 502,292 + -2.7 502,305 + -1.5 502,305 + -1.9 502,305 + -3.0 502,305 + -0.9 502,305 + -1.6 502,305 + -1.1 502,305 + -0.5 502,305 + -1.8 502,305 + -0.5 502,305 + -1.9 502,305 + -1.6 502,306 - -1.1 502,306 - -1.3 502,306 - -0.5 502,306 - -1.5 502,306 - -1.7 502,306 - -1.9 502,306 - +0.3 502,306 - -1.5 502,451 + -0.0 502,452 - +0.2 502,452 - +0.1
Or see this region's nucleotide sequence