Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS01165

Experiment: Motility_outer_sample_with_outgrowth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS01155 and QEN71_RS01160 are separated by 3 nucleotidesQEN71_RS01160 and QEN71_RS01165 are separated by 17 nucleotidesQEN71_RS01165 and QEN71_RS01170 are separated by 160 nucleotides QEN71_RS01155: QEN71_RS01155 - helical backbone metal receptor, at 263,741 to 264,562 _RS01155 QEN71_RS01160: QEN71_RS01160 - SDR family oxidoreductase, at 264,566 to 265,336 _RS01160 QEN71_RS01165: QEN71_RS01165 - thiol:disulfide interchange protein DsbA/DsbL, at 265,354 to 265,992 _RS01165 QEN71_RS01170: QEN71_RS01170 - SPOR domain-containing protein, at 266,153 to 266,947 _RS01170 Position (kb) 265 266Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 264.567 kb on + strandat 264.568 kb on - strandat 264.568 kb on - strandat 264.615 kb on + strandat 264.757 kb on - strand, within QEN71_RS01160at 264.789 kb on + strand, within QEN71_RS01160at 264.790 kb on - strand, within QEN71_RS01160at 264.856 kb on - strand, within QEN71_RS01160at 264.856 kb on - strand, within QEN71_RS01160at 264.856 kb on - strand, within QEN71_RS01160at 264.856 kb on - strand, within QEN71_RS01160at 264.885 kb on + strand, within QEN71_RS01160at 264.885 kb on + strand, within QEN71_RS01160at 264.886 kb on - strand, within QEN71_RS01160at 264.886 kb on - strand, within QEN71_RS01160at 265.005 kb on + strand, within QEN71_RS01160at 265.005 kb on + strand, within QEN71_RS01160at 265.005 kb on + strand, within QEN71_RS01160at 265.005 kb on + strand, within QEN71_RS01160at 265.005 kb on + strand, within QEN71_RS01160at 265.005 kb on + strand, within QEN71_RS01160at 265.005 kb on + strand, within QEN71_RS01160at 265.005 kb on + strand, within QEN71_RS01160at 265.005 kb on + strand, within QEN71_RS01160at 265.005 kb on + strand, within QEN71_RS01160at 265.005 kb on + strand, within QEN71_RS01160at 265.005 kb on + strand, within QEN71_RS01160at 265.005 kb on + strand, within QEN71_RS01160at 265.006 kb on - strand, within QEN71_RS01160at 265.006 kb on - strand, within QEN71_RS01160at 265.006 kb on - strand, within QEN71_RS01160at 265.006 kb on - strand, within QEN71_RS01160at 265.157 kb on + strand, within QEN71_RS01160at 265.158 kb on - strand, within QEN71_RS01160at 265.170 kb on + strand, within QEN71_RS01160at 265.170 kb on + strand, within QEN71_RS01160at 265.267 kb on - strandat 265.267 kb on - strandat 265.289 kb on + strandat 265.290 kb on - strandat 265.290 kb on - strandat 265.355 kb on + strandat 265.355 kb on + strandat 265.355 kb on + strandat 265.355 kb on + strandat 265.355 kb on + strandat 265.355 kb on + strandat 265.356 kb on - strandat 265.356 kb on - strandat 265.356 kb on - strandat 265.356 kb on - strandat 265.356 kb on - strandat 265.356 kb on - strandat 265.356 kb on - strandat 265.356 kb on - strandat 265.356 kb on - strandat 265.445 kb on + strand, within QEN71_RS01165at 265.445 kb on + strand, within QEN71_RS01165at 265.445 kb on + strand, within QEN71_RS01165at 265.445 kb on + strand, within QEN71_RS01165at 265.544 kb on + strand, within QEN71_RS01165at 265.544 kb on + strand, within QEN71_RS01165at 265.544 kb on + strand, within QEN71_RS01165at 265.544 kb on + strand, within QEN71_RS01165at 265.545 kb on - strand, within QEN71_RS01165at 265.545 kb on - strand, within QEN71_RS01165at 265.545 kb on - strand, within QEN71_RS01165at 265.619 kb on + strand, within QEN71_RS01165at 265.619 kb on + strand, within QEN71_RS01165at 265.619 kb on + strand, within QEN71_RS01165at 265.619 kb on + strand, within QEN71_RS01165at 265.619 kb on + strand, within QEN71_RS01165at 265.619 kb on + strand, within QEN71_RS01165at 265.619 kb on + strand, within QEN71_RS01165at 265.619 kb on - strand, within QEN71_RS01165at 265.620 kb on - strand, within QEN71_RS01165at 265.620 kb on - strand, within QEN71_RS01165at 265.620 kb on - strand, within QEN71_RS01165at 265.620 kb on - strand, within QEN71_RS01165at 265.697 kb on + strand, within QEN71_RS01165at 265.697 kb on + strand, within QEN71_RS01165at 265.698 kb on - strand, within QEN71_RS01165at 265.793 kb on + strand, within QEN71_RS01165at 265.898 kb on + strand, within QEN71_RS01165at 265.898 kb on + strand, within QEN71_RS01165at 266.018 kb on + strandat 266.018 kb on + strandat 266.018 kb on + strandat 266.018 kb on + strandat 266.019 kb on - strandat 266.019 kb on - strandat 266.019 kb on - strandat 266.019 kb on - strandat 266.040 kb on + strandat 266.040 kb on + strandat 266.040 kb on + strandat 266.040 kb on + strandat 266.040 kb on + strandat 266.041 kb on - strandat 266.041 kb on - strandat 266.041 kb on - strandat 266.041 kb on - strandat 266.041 kb on - strandat 266.041 kb on - strandat 266.041 kb on - strandat 266.141 kb on - strandat 266.141 kb on - strandat 266.147 kb on + strandat 266.148 kb on - strandat 266.182 kb on + strandat 266.266 kb on - strand, within QEN71_RS01170

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Per-strain Table

Position Strand Gene LocusTag Fraction Motility_outer_sample_with_outgrowth
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264,567 + +0.5
264,568 - -0.1
264,568 - +1.0
264,615 + -0.6
264,757 - QEN71_RS01160 0.25 +0.3
264,789 + QEN71_RS01160 0.29 -0.1
264,790 - QEN71_RS01160 0.29 -1.6
264,856 - QEN71_RS01160 0.38 -0.5
264,856 - QEN71_RS01160 0.38 -1.8
264,856 - QEN71_RS01160 0.38 -0.5
264,856 - QEN71_RS01160 0.38 +0.4
264,885 + QEN71_RS01160 0.41 +1.1
264,885 + QEN71_RS01160 0.41 -0.5
264,886 - QEN71_RS01160 0.42 -0.1
264,886 - QEN71_RS01160 0.42 -0.4
265,005 + QEN71_RS01160 0.57 -3.5
265,005 + QEN71_RS01160 0.57 -0.6
265,005 + QEN71_RS01160 0.57 -0.4
265,005 + QEN71_RS01160 0.57 -1.0
265,005 + QEN71_RS01160 0.57 -0.1
265,005 + QEN71_RS01160 0.57 +0.2
265,005 + QEN71_RS01160 0.57 -0.9
265,005 + QEN71_RS01160 0.57 -0.2
265,005 + QEN71_RS01160 0.57 +0.2
265,005 + QEN71_RS01160 0.57 +0.5
265,005 + QEN71_RS01160 0.57 +0.3
265,005 + QEN71_RS01160 0.57 +0.7
265,005 + QEN71_RS01160 0.57 +0.3
265,006 - QEN71_RS01160 0.57 +1.2
265,006 - QEN71_RS01160 0.57 +0.2
265,006 - QEN71_RS01160 0.57 -0.1
265,006 - QEN71_RS01160 0.57 -0.2
265,157 + QEN71_RS01160 0.77 -0.1
265,158 - QEN71_RS01160 0.77 +0.6
265,170 + QEN71_RS01160 0.78 -1.1
265,170 + QEN71_RS01160 0.78 -1.2
265,267 - -0.1
265,267 - +0.1
265,289 + -1.7
265,290 - -0.9
265,290 - -0.1
265,355 + -0.1
265,355 + -1.7
265,355 + +0.4
265,355 + -0.9
265,355 + -1.0
265,355 + -1.4
265,356 - -1.4
265,356 - -0.0
265,356 - +0.5
265,356 - +1.2
265,356 - +0.6
265,356 - -1.9
265,356 - +1.1
265,356 - +0.9
265,356 - -2.1
265,445 + QEN71_RS01165 0.14 -2.1
265,445 + QEN71_RS01165 0.14 -0.7
265,445 + QEN71_RS01165 0.14 -1.2
265,445 + QEN71_RS01165 0.14 -0.1
265,544 + QEN71_RS01165 0.30 -2.2
265,544 + QEN71_RS01165 0.30 -3.3
265,544 + QEN71_RS01165 0.30 -1.9
265,544 + QEN71_RS01165 0.30 -2.2
265,545 - QEN71_RS01165 0.30 -1.8
265,545 - QEN71_RS01165 0.30 -2.2
265,545 - QEN71_RS01165 0.30 -0.7
265,619 + QEN71_RS01165 0.41 -1.5
265,619 + QEN71_RS01165 0.41 -1.9
265,619 + QEN71_RS01165 0.41 -3.7
265,619 + QEN71_RS01165 0.41 -2.0
265,619 + QEN71_RS01165 0.41 -0.4
265,619 + QEN71_RS01165 0.41 -2.4
265,619 + QEN71_RS01165 0.41 -2.8
265,619 - QEN71_RS01165 0.41 -0.9
265,620 - QEN71_RS01165 0.42 -1.7
265,620 - QEN71_RS01165 0.42 -3.4
265,620 - QEN71_RS01165 0.42 -2.4
265,620 - QEN71_RS01165 0.42 -0.4
265,697 + QEN71_RS01165 0.54 -2.0
265,697 + QEN71_RS01165 0.54 -1.5
265,698 - QEN71_RS01165 0.54 -3.7
265,793 + QEN71_RS01165 0.69 -1.4
265,898 + QEN71_RS01165 0.85 -1.8
265,898 + QEN71_RS01165 0.85 -3.0
266,018 + -2.2
266,018 + -2.4
266,018 + -2.5
266,018 + -2.2
266,019 - -1.0
266,019 - +0.5
266,019 - +0.8
266,019 - -1.8
266,040 + -1.5
266,040 + -1.4
266,040 + -0.2
266,040 + -2.4
266,040 + -0.4
266,041 - +0.5
266,041 - +0.6
266,041 - -0.5
266,041 - +0.7
266,041 - +1.8
266,041 - -0.7
266,041 - +0.3
266,141 - -0.1
266,141 - -1.4
266,147 + +0.0
266,148 - -0.4
266,182 + -1.1
266,266 - QEN71_RS01170 0.14 -0.1

Or see this region's nucleotide sequence