Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS00360

Experiment: Motility_outer_sample_with_outgrowth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS00355 and QEN71_RS00360 are separated by 10 nucleotidesQEN71_RS00360 and QEN71_RS00365 are separated by 86 nucleotides QEN71_RS00355: QEN71_RS00355 - tyrosine recombinase XerC, at 75,441 to 76,364 _RS00355 QEN71_RS00360: QEN71_RS00360 - DUF484 family protein, at 76,375 to 77,100 _RS00360 QEN71_RS00365: QEN71_RS00365 - diaminopimelate epimerase, at 77,187 to 78,047 _RS00365 Position (kb) 76 77 78Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 75.401 kb on + strandat 75.402 kb on - strandat 75.402 kb on - strandat 76.487 kb on - strand, within QEN71_RS00360at 76.487 kb on - strand, within QEN71_RS00360at 76.487 kb on - strand, within QEN71_RS00360at 76.487 kb on - strand, within QEN71_RS00360at 76.487 kb on - strand, within QEN71_RS00360at 76.487 kb on - strand, within QEN71_RS00360at 76.487 kb on - strand, within QEN71_RS00360at 76.487 kb on - strand, within QEN71_RS00360at 76.699 kb on - strand, within QEN71_RS00360at 76.699 kb on - strand, within QEN71_RS00360at 76.699 kb on - strand, within QEN71_RS00360at 77.069 kb on - strandat 77.076 kb on - strandat 77.076 kb on - strandat 77.112 kb on - strandat 77.143 kb on - strandat 77.143 kb on - strandat 78.054 kb on - strandat 78.058 kb on + strandat 78.058 kb on + strandat 78.058 kb on + strandat 78.058 kb on + strandat 78.058 kb on + strandat 78.058 kb on + strandat 78.058 kb on + strandat 78.058 kb on + strandat 78.058 kb on + strandat 78.058 kb on + strandat 78.058 kb on + strandat 78.058 kb on + strandat 78.058 kb on + strandat 78.058 kb on + strandat 78.058 kb on + strandat 78.058 kb on + strandat 78.059 kb on - strandat 78.059 kb on - strandat 78.059 kb on - strandat 78.059 kb on - strandat 78.059 kb on - strandat 78.059 kb on - strandat 78.059 kb on - strandat 78.059 kb on - strandat 78.059 kb on - strandat 78.059 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Motility_outer_sample_with_outgrowth
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75,401 + -0.4
75,402 - +0.1
75,402 - -0.7
76,487 - QEN71_RS00360 0.15 -3.8
76,487 - QEN71_RS00360 0.15 -0.9
76,487 - QEN71_RS00360 0.15 -3.8
76,487 - QEN71_RS00360 0.15 -1.3
76,487 - QEN71_RS00360 0.15 -4.9
76,487 - QEN71_RS00360 0.15 -3.4
76,487 - QEN71_RS00360 0.15 -0.1
76,487 - QEN71_RS00360 0.15 -1.7
76,699 - QEN71_RS00360 0.45 -1.4
76,699 - QEN71_RS00360 0.45 -2.8
76,699 - QEN71_RS00360 0.45 -3.7
77,069 - -2.5
77,076 - -3.4
77,076 - -0.7
77,112 - -1.6
77,143 - -0.0
77,143 - +1.4
78,054 - +0.5
78,058 + +0.7
78,058 + +0.3
78,058 + -1.1
78,058 + +1.3
78,058 + +0.5
78,058 + +1.4
78,058 + +0.7
78,058 + +0.3
78,058 + +0.9
78,058 + -0.4
78,058 + -2.2
78,058 + -0.7
78,058 + -1.1
78,058 + +1.5
78,058 + +0.4
78,058 + -0.0
78,059 - +1.4
78,059 - +1.7
78,059 - +1.7
78,059 - +1.7
78,059 - +1.8
78,059 - +1.9
78,059 - +2.4
78,059 - +1.2
78,059 - +1.6
78,059 - +1.0

Or see this region's nucleotide sequence