Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS00185

Experiment: Motility_outer_sample_with_outgrowth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS00175 and QEN71_RS00180 overlap by 4 nucleotidesQEN71_RS00180 and QEN71_RS00185 overlap by 11 nucleotidesQEN71_RS00185 and QEN71_RS00190 are separated by 0 nucleotidesQEN71_RS00190 and QEN71_RS00195 are separated by 86 nucleotides QEN71_RS00175: QEN71_RS00175 - 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB, at 36,802 to 38,226 _RS00175 QEN71_RS00180: QEN71_RS00180 - DUF4390 domain-containing protein, at 38,223 to 38,813 _RS00180 QEN71_RS00185: QEN71_RS00185 - PAS domain-containing sensor histidine kinase, at 38,803 to 41,223 _RS00185 QEN71_RS00190: QEN71_RS00190 - response regulator transcription factor EsaR, at 41,224 to 41,913 _RS00190 QEN71_RS00195: QEN71_RS00195 - tRNA-Phe, at 42,000 to 42,075 _RS00195 Position (kb) 38 39 40 41 42Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 37.973 kb on + strand, within QEN71_RS00175at 37.974 kb on - strand, within QEN71_RS00175at 38.008 kb on + strand, within QEN71_RS00175at 38.008 kb on + strand, within QEN71_RS00175at 38.008 kb on + strand, within QEN71_RS00175at 38.008 kb on + strand, within QEN71_RS00175at 38.008 kb on + strand, within QEN71_RS00175at 38.008 kb on + strand, within QEN71_RS00175at 38.008 kb on + strand, within QEN71_RS00175at 38.008 kb on + strand, within QEN71_RS00175at 38.008 kb on + strand, within QEN71_RS00175at 38.009 kb on - strand, within QEN71_RS00175at 38.009 kb on - strand, within QEN71_RS00175at 38.009 kb on - strand, within QEN71_RS00175at 38.009 kb on - strand, within QEN71_RS00175at 38.009 kb on - strand, within QEN71_RS00175at 38.009 kb on - strand, within QEN71_RS00175at 38.009 kb on - strand, within QEN71_RS00175at 38.013 kb on + strand, within QEN71_RS00175at 38.013 kb on + strand, within QEN71_RS00175at 38.013 kb on + strand, within QEN71_RS00175at 38.013 kb on + strand, within QEN71_RS00175at 38.014 kb on - strand, within QEN71_RS00175at 38.014 kb on - strand, within QEN71_RS00175at 38.014 kb on - strand, within QEN71_RS00175at 38.014 kb on - strand, within QEN71_RS00175at 38.014 kb on - strand, within QEN71_RS00175at 38.014 kb on - strand, within QEN71_RS00175at 38.014 kb on - strand, within QEN71_RS00175at 38.014 kb on - strand, within QEN71_RS00175at 38.014 kb on - strand, within QEN71_RS00175at 38.141 kb on + strandat 38.141 kb on + strandat 38.141 kb on + strandat 38.141 kb on + strandat 38.141 kb on + strandat 38.141 kb on + strandat 38.141 kb on + strandat 38.141 kb on + strandat 38.141 kb on + strandat 38.142 kb on - strandat 38.142 kb on - strandat 38.142 kb on - strandat 38.142 kb on - strandat 38.183 kb on + strandat 38.183 kb on + strandat 38.183 kb on + strandat 38.183 kb on + strandat 38.183 kb on + strandat 38.183 kb on + strandat 38.183 kb on + strandat 38.184 kb on - strandat 38.203 kb on + strandat 38.203 kb on + strandat 38.203 kb on + strandat 38.204 kb on - strandat 38.204 kb on - strandat 38.440 kb on - strand, within QEN71_RS00180at 38.440 kb on - strand, within QEN71_RS00180at 38.479 kb on - strand, within QEN71_RS00180at 38.479 kb on - strand, within QEN71_RS00180at 38.661 kb on - strand, within QEN71_RS00180at 38.661 kb on - strand, within QEN71_RS00180at 38.674 kb on - strand, within QEN71_RS00180at 38.674 kb on - strand, within QEN71_RS00180at 38.674 kb on - strand, within QEN71_RS00180at 38.674 kb on - strand, within QEN71_RS00180at 38.674 kb on - strand, within QEN71_RS00180at 38.674 kb on - strand, within QEN71_RS00180at 38.674 kb on - strand, within QEN71_RS00180at 38.784 kb on - strandat 38.784 kb on - strandat 38.784 kb on - strandat 38.807 kb on + strandat 38.807 kb on + strandat 38.807 kb on + strandat 38.808 kb on - strandat 38.808 kb on - strandat 38.811 kb on + strandat 38.811 kb on + strandat 38.811 kb on + strandat 38.811 kb on + strandat 38.811 kb on + strandat 38.811 kb on + strandat 38.811 kb on + strandat 38.812 kb on - strandat 38.812 kb on - strandat 38.812 kb on - strandat 38.814 kb on - strandat 38.817 kb on - strandat 38.817 kb on - strandat 38.862 kb on - strandat 38.942 kb on - strandat 38.942 kb on - strandat 38.945 kb on - strandat 38.945 kb on - strandat 38.945 kb on - strandat 39.063 kb on - strand, within QEN71_RS00185at 39.063 kb on - strand, within QEN71_RS00185at 39.119 kb on - strand, within QEN71_RS00185at 39.119 kb on - strand, within QEN71_RS00185at 39.119 kb on - strand, within QEN71_RS00185at 39.119 kb on - strand, within QEN71_RS00185at 39.119 kb on - strand, within QEN71_RS00185at 39.119 kb on - strand, within QEN71_RS00185at 39.131 kb on - strand, within QEN71_RS00185at 39.131 kb on - strand, within QEN71_RS00185at 39.421 kb on - strand, within QEN71_RS00185at 39.421 kb on - strand, within QEN71_RS00185at 39.425 kb on - strand, within QEN71_RS00185at 39.425 kb on - strand, within QEN71_RS00185at 39.425 kb on - strand, within QEN71_RS00185at 39.425 kb on - strand, within QEN71_RS00185at 39.425 kb on - strand, within QEN71_RS00185at 39.425 kb on - strand, within QEN71_RS00185at 39.425 kb on - strand, within QEN71_RS00185at 39.734 kb on - strand, within QEN71_RS00185at 39.734 kb on - strand, within QEN71_RS00185at 39.734 kb on - strand, within QEN71_RS00185at 39.734 kb on - strand, within QEN71_RS00185at 39.734 kb on - strand, within QEN71_RS00185at 39.734 kb on - strand, within QEN71_RS00185at 39.734 kb on - strand, within QEN71_RS00185at 39.734 kb on - strand, within QEN71_RS00185at 39.869 kb on - strand, within QEN71_RS00185at 39.869 kb on - strand, within QEN71_RS00185at 40.007 kb on - strand, within QEN71_RS00185at 40.361 kb on - strand, within QEN71_RS00185at 40.381 kb on - strand, within QEN71_RS00185at 40.381 kb on - strand, within QEN71_RS00185at 40.613 kb on - strand, within QEN71_RS00185at 40.613 kb on - strand, within QEN71_RS00185at 40.685 kb on - strand, within QEN71_RS00185at 40.741 kb on - strand, within QEN71_RS00185at 40.743 kb on - strand, within QEN71_RS00185at 40.743 kb on - strand, within QEN71_RS00185at 40.780 kb on - strand, within QEN71_RS00185at 40.859 kb on - strand, within QEN71_RS00185at 40.859 kb on - strand, within QEN71_RS00185at 40.859 kb on - strand, within QEN71_RS00185at 40.859 kb on - strand, within QEN71_RS00185at 41.052 kb on - strandat 41.221 kb on + strandat 41.221 kb on + strandat 41.221 kb on + strandat 42.118 kb on + strandat 42.118 kb on + strandat 42.118 kb on + strandat 42.118 kb on + strandat 42.118 kb on + strandat 42.132 kb on + strandat 42.132 kb on + strandat 42.132 kb on + strandat 42.133 kb on - strandat 42.133 kb on - strandat 42.145 kb on + strandat 42.145 kb on + strandat 42.146 kb on - strandat 42.146 kb on - strandat 42.196 kb on + strandat 42.197 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Motility_outer_sample_with_outgrowth
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37,973 + QEN71_RS00175 0.82 -0.1
37,974 - QEN71_RS00175 0.82 -0.4
38,008 + QEN71_RS00175 0.85 -0.8
38,008 + QEN71_RS00175 0.85 -0.6
38,008 + QEN71_RS00175 0.85 +1.1
38,008 + QEN71_RS00175 0.85 +0.1
38,008 + QEN71_RS00175 0.85 -0.8
38,008 + QEN71_RS00175 0.85 -0.8
38,008 + QEN71_RS00175 0.85 +0.3
38,008 + QEN71_RS00175 0.85 +0.2
38,008 + QEN71_RS00175 0.85 +0.3
38,009 - QEN71_RS00175 0.85 -3.1
38,009 - QEN71_RS00175 0.85 -1.3
38,009 - QEN71_RS00175 0.85 -0.9
38,009 - QEN71_RS00175 0.85 +0.6
38,009 - QEN71_RS00175 0.85 +0.9
38,009 - QEN71_RS00175 0.85 +0.1
38,009 - QEN71_RS00175 0.85 +0.2
38,013 + QEN71_RS00175 0.85 -0.3
38,013 + QEN71_RS00175 0.85 +0.4
38,013 + QEN71_RS00175 0.85 +0.5
38,013 + QEN71_RS00175 0.85 +0.3
38,014 - QEN71_RS00175 0.85 +0.3
38,014 - QEN71_RS00175 0.85 +0.2
38,014 - QEN71_RS00175 0.85 -0.0
38,014 - QEN71_RS00175 0.85 -1.4
38,014 - QEN71_RS00175 0.85 -0.5
38,014 - QEN71_RS00175 0.85 +0.2
38,014 - QEN71_RS00175 0.85 +0.4
38,014 - QEN71_RS00175 0.85 +0.2
38,014 - QEN71_RS00175 0.85 -0.2
38,141 + +0.9
38,141 + +0.3
38,141 + -0.0
38,141 + +0.1
38,141 + +0.2
38,141 + -0.5
38,141 + +1.4
38,141 + +0.3
38,141 + -1.9
38,142 - -4.3
38,142 - -1.8
38,142 - -1.8
38,142 - -2.2
38,183 + -1.3
38,183 + -0.9
38,183 + +0.4
38,183 + +0.6
38,183 + +1.0
38,183 + -0.5
38,183 + +0.5
38,184 - -1.5
38,203 + -2.2
38,203 + -0.5
38,203 + +0.8
38,204 - -4.2
38,204 - -2.8
38,440 - QEN71_RS00180 0.37 -3.1
38,440 - QEN71_RS00180 0.37 -2.7
38,479 - QEN71_RS00180 0.43 -0.7
38,479 - QEN71_RS00180 0.43 -2.9
38,661 - QEN71_RS00180 0.74 -2.9
38,661 - QEN71_RS00180 0.74 -2.0
38,674 - QEN71_RS00180 0.76 -0.9
38,674 - QEN71_RS00180 0.76 -2.8
38,674 - QEN71_RS00180 0.76 -2.4
38,674 - QEN71_RS00180 0.76 -0.7
38,674 - QEN71_RS00180 0.76 -0.4
38,674 - QEN71_RS00180 0.76 -1.5
38,674 - QEN71_RS00180 0.76 -0.4
38,784 - -4.0
38,784 - -0.7
38,784 - -1.1
38,807 + -2.3
38,807 + -2.8
38,807 + -2.5
38,808 - -2.4
38,808 - -1.9
38,811 + -3.6
38,811 + -1.9
38,811 + -0.6
38,811 + -3.5
38,811 + -0.7
38,811 + +0.1
38,811 + -2.3
38,812 - -2.7
38,812 - -3.5
38,812 - -2.5
38,814 - -0.7
38,817 - -2.2
38,817 - -0.4
38,862 - -1.7
38,942 - -0.7
38,942 - -1.1
38,945 - -0.4
38,945 - -2.7
38,945 - -2.9
39,063 - QEN71_RS00185 0.11 -2.7
39,063 - QEN71_RS00185 0.11 -1.4
39,119 - QEN71_RS00185 0.13 -2.8
39,119 - QEN71_RS00185 0.13 -0.1
39,119 - QEN71_RS00185 0.13 -1.5
39,119 - QEN71_RS00185 0.13 -1.8
39,119 - QEN71_RS00185 0.13 -1.1
39,119 - QEN71_RS00185 0.13 -0.7
39,131 - QEN71_RS00185 0.14 -1.4
39,131 - QEN71_RS00185 0.14 -0.7
39,421 - QEN71_RS00185 0.26 -1.1
39,421 - QEN71_RS00185 0.26 -1.3
39,425 - QEN71_RS00185 0.26 -0.4
39,425 - QEN71_RS00185 0.26 -1.8
39,425 - QEN71_RS00185 0.26 -1.8
39,425 - QEN71_RS00185 0.26 -1.1
39,425 - QEN71_RS00185 0.26 -1.1
39,425 - QEN71_RS00185 0.26 +1.5
39,425 - QEN71_RS00185 0.26 -0.7
39,734 - QEN71_RS00185 0.38 -0.9
39,734 - QEN71_RS00185 0.38 -1.5
39,734 - QEN71_RS00185 0.38 -1.3
39,734 - QEN71_RS00185 0.38 -2.6
39,734 - QEN71_RS00185 0.38 -0.4
39,734 - QEN71_RS00185 0.38 -1.8
39,734 - QEN71_RS00185 0.38 -2.3
39,734 - QEN71_RS00185 0.38 -1.4
39,869 - QEN71_RS00185 0.44 -2.4
39,869 - QEN71_RS00185 0.44 -1.4
40,007 - QEN71_RS00185 0.50 -0.7
40,361 - QEN71_RS00185 0.64 -1.1
40,381 - QEN71_RS00185 0.65 -3.1
40,381 - QEN71_RS00185 0.65 -0.4
40,613 - QEN71_RS00185 0.75 -0.9
40,613 - QEN71_RS00185 0.75 -0.1
40,685 - QEN71_RS00185 0.78 -0.9
40,741 - QEN71_RS00185 0.80 -3.6
40,743 - QEN71_RS00185 0.80 -1.4
40,743 - QEN71_RS00185 0.80 -2.9
40,780 - QEN71_RS00185 0.82 -2.0
40,859 - QEN71_RS00185 0.85 -2.4
40,859 - QEN71_RS00185 0.85 -3.9
40,859 - QEN71_RS00185 0.85 -2.7
40,859 - QEN71_RS00185 0.85 -3.9
41,052 - -0.9
41,221 + -0.9
41,221 + -1.7
41,221 + -0.7
42,118 + -0.4
42,118 + -0.8
42,118 + +0.2
42,118 + -2.1
42,118 + -0.2
42,132 + -0.2
42,132 + +0.4
42,132 + -0.8
42,133 - -0.1
42,133 - -0.2
42,145 + -0.4
42,145 + -1.5
42,146 - +2.1
42,146 - +0.3
42,196 + -0.6
42,197 - -0.9

Or see this region's nucleotide sequence