Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment B, time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_04185 and MIT1002_04186 are separated by 33 nucleotides MIT1002_04186 and MIT1002_04187 are separated by 39 nucleotides
MIT1002_04185: MIT1002_04185 - hypothetical protein, at 46,810 to 47,322
_04185
MIT1002_04186: MIT1002_04186 - hypothetical protein, at 47,356 to 48,060
_04186
MIT1002_04187: MIT1002_04187 - hypothetical protein, at 48,100 to 48,306
_04187
Position (kb) 47
48
49 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 46.455 kb on + strand at 46.463 kb on - strand at 46.506 kb on - strand at 46.605 kb on + strand at 46.638 kb on + strand at 46.751 kb on - strand at 46.752 kb on + strand at 46.763 kb on - strand at 46.927 kb on - strand, within MIT1002_04185 at 47.039 kb on + strand, within MIT1002_04185 at 47.138 kb on + strand, within MIT1002_04185 at 47.138 kb on + strand, within MIT1002_04185 at 47.138 kb on + strand, within MIT1002_04185 at 47.138 kb on + strand, within MIT1002_04185 at 47.138 kb on + strand, within MIT1002_04185 at 47.138 kb on + strand, within MIT1002_04185 at 47.138 kb on + strand, within MIT1002_04185 at 47.138 kb on + strand, within MIT1002_04185 at 47.146 kb on - strand, within MIT1002_04185 at 47.146 kb on - strand, within MIT1002_04185 at 47.146 kb on - strand, within MIT1002_04185 at 47.146 kb on - strand, within MIT1002_04185 at 47.146 kb on - strand, within MIT1002_04185 at 47.146 kb on - strand, within MIT1002_04185 at 47.146 kb on - strand, within MIT1002_04185 at 47.146 kb on - strand, within MIT1002_04185 at 47.204 kb on + strand, within MIT1002_04185 at 47.204 kb on + strand, within MIT1002_04185 at 47.212 kb on - strand, within MIT1002_04185 at 47.212 kb on - strand, within MIT1002_04185 at 47.220 kb on + strand, within MIT1002_04185 at 47.220 kb on + strand, within MIT1002_04185 at 47.228 kb on - strand, within MIT1002_04185 at 47.228 kb on - strand, within MIT1002_04185 at 47.228 kb on - strand, within MIT1002_04185 at 47.228 kb on - strand, within MIT1002_04185 at 47.228 kb on - strand, within MIT1002_04185 at 47.240 kb on + strand, within MIT1002_04185 at 47.324 kb on + strand at 47.334 kb on + strand at 47.334 kb on + strand at 47.361 kb on - strand at 47.364 kb on + strand at 47.364 kb on + strand at 47.364 kb on + strand at 47.364 kb on + strand at 47.364 kb on + strand at 47.364 kb on + strand at 47.364 kb on + strand at 47.364 kb on + strand at 47.372 kb on - strand at 47.372 kb on - strand at 47.372 kb on - strand at 47.372 kb on - strand at 47.372 kb on - strand at 47.372 kb on - strand at 47.372 kb on - strand at 47.372 kb on - strand at 47.372 kb on - strand at 47.372 kb on - strand at 47.372 kb on - strand at 47.427 kb on + strand, within MIT1002_04186 at 47.427 kb on + strand, within MIT1002_04186 at 47.430 kb on - strand, within MIT1002_04186 at 47.439 kb on + strand, within MIT1002_04186 at 47.468 kb on + strand, within MIT1002_04186 at 47.507 kb on + strand, within MIT1002_04186 at 47.521 kb on - strand, within MIT1002_04186 at 47.521 kb on - strand, within MIT1002_04186 at 47.532 kb on - strand, within MIT1002_04186 at 47.551 kb on - strand, within MIT1002_04186 at 47.666 kb on - strand, within MIT1002_04186 at 47.694 kb on + strand, within MIT1002_04186 at 47.704 kb on + strand, within MIT1002_04186 at 47.704 kb on + strand, within MIT1002_04186 at 47.712 kb on - strand, within MIT1002_04186 at 47.718 kb on - strand, within MIT1002_04186 at 47.783 kb on + strand, within MIT1002_04186 at 47.813 kb on - strand, within MIT1002_04186 at 47.833 kb on - strand, within MIT1002_04186 at 47.867 kb on + strand, within MIT1002_04186 at 47.894 kb on - strand, within MIT1002_04186 at 47.963 kb on - strand, within MIT1002_04186 at 48.002 kb on + strand at 48.111 kb on + strand at 48.433 kb on + strand at 48.504 kb on - strand at 48.537 kb on + strand at 48.537 kb on + strand at 48.537 kb on + strand at 48.537 kb on + strand at 48.537 kb on + strand at 48.537 kb on + strand at 48.537 kb on + strand at 48.537 kb on + strand at 48.537 kb on + strand at 48.537 kb on + strand at 48.537 kb on + strand at 48.537 kb on + strand at 48.537 kb on + strand at 48.545 kb on - strand at 48.545 kb on - strand at 48.545 kb on - strand at 48.545 kb on - strand at 48.545 kb on - strand at 48.545 kb on - strand at 48.545 kb on - strand at 48.545 kb on - strand at 48.545 kb on - strand at 48.545 kb on - strand at 48.545 kb on - strand at 48.545 kb on - strand at 48.545 kb on - strand at 48.555 kb on - strand at 48.623 kb on - strand at 48.684 kb on - strand at 48.707 kb on + strand at 48.741 kb on + strand at 48.741 kb on + strand at 48.741 kb on + strand at 48.741 kb on + strand at 48.741 kb on + strand at 48.741 kb on + strand at 48.741 kb on + strand at 48.749 kb on - strand at 48.749 kb on - strand at 48.749 kb on - strand at 48.749 kb on - strand at 48.749 kb on - strand at 48.749 kb on - strand at 48.751 kb on + strand at 48.761 kb on - strand at 48.763 kb on + strand at 48.797 kb on + strand at 48.797 kb on + strand at 48.797 kb on + strand at 48.805 kb on - strand at 48.805 kb on - strand at 48.805 kb on - strand at 48.805 kb on - strand at 48.852 kb on + strand at 48.860 kb on - strand at 48.877 kb on - strand at 48.900 kb on - strand at 48.918 kb on - strand at 48.970 kb on - strand at 49.008 kb on + strand at 49.020 kb on + strand at 49.043 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment B, time point 1 remove 46,455 + -0.7 46,463 - -0.5 46,506 - +0.2 46,605 + +1.0 46,638 + +1.2 46,751 - -0.2 46,752 + +1.0 46,763 - +0.1 46,927 - MIT1002_04185 0.23 -1.6 47,039 + MIT1002_04185 0.45 -0.4 47,138 + MIT1002_04185 0.64 -0.8 47,138 + MIT1002_04185 0.64 -0.5 47,138 + MIT1002_04185 0.64 +0.9 47,138 + MIT1002_04185 0.64 +0.4 47,138 + MIT1002_04185 0.64 -0.3 47,138 + MIT1002_04185 0.64 +1.1 47,138 + MIT1002_04185 0.64 -1.2 47,138 + MIT1002_04185 0.64 +0.4 47,146 - MIT1002_04185 0.65 -1.5 47,146 - MIT1002_04185 0.65 -0.2 47,146 - MIT1002_04185 0.65 +0.9 47,146 - MIT1002_04185 0.65 -0.8 47,146 - MIT1002_04185 0.65 -2.7 47,146 - MIT1002_04185 0.65 -1.9 47,146 - MIT1002_04185 0.65 +0.4 47,146 - MIT1002_04185 0.65 +1.2 47,204 + MIT1002_04185 0.77 -0.1 47,204 + MIT1002_04185 0.77 -0.9 47,212 - MIT1002_04185 0.78 +0.6 47,212 - MIT1002_04185 0.78 +0.2 47,220 + MIT1002_04185 0.80 -0.1 47,220 + MIT1002_04185 0.80 +0.9 47,228 - MIT1002_04185 0.81 -1.1 47,228 - MIT1002_04185 0.81 +0.6 47,228 - MIT1002_04185 0.81 +0.0 47,228 - MIT1002_04185 0.81 +0.3 47,228 - MIT1002_04185 0.81 +0.1 47,240 + MIT1002_04185 0.84 -0.5 47,324 + -1.1 47,334 + -1.6 47,334 + +0.7 47,361 - -0.2 47,364 + -0.0 47,364 + -0.7 47,364 + -1.7 47,364 + -0.1 47,364 + -0.3 47,364 + +0.2 47,364 + +0.1 47,364 + +0.3 47,372 - -2.2 47,372 - +1.0 47,372 - -0.0 47,372 - -0.6 47,372 - +0.7 47,372 - -0.3 47,372 - +0.1 47,372 - +0.6 47,372 - +0.5 47,372 - -0.3 47,372 - +0.3 47,427 + MIT1002_04186 0.10 -1.7 47,427 + MIT1002_04186 0.10 -0.6 47,430 - MIT1002_04186 0.10 -0.3 47,439 + MIT1002_04186 0.12 -1.7 47,468 + MIT1002_04186 0.16 +0.2 47,507 + MIT1002_04186 0.21 +0.8 47,521 - MIT1002_04186 0.23 +0.6 47,521 - MIT1002_04186 0.23 -0.7 47,532 - MIT1002_04186 0.25 -1.2 47,551 - MIT1002_04186 0.28 -0.6 47,666 - MIT1002_04186 0.44 -0.0 47,694 + MIT1002_04186 0.48 -0.6 47,704 + MIT1002_04186 0.49 +0.7 47,704 + MIT1002_04186 0.49 -0.2 47,712 - MIT1002_04186 0.50 -0.2 47,718 - MIT1002_04186 0.51 -0.9 47,783 + MIT1002_04186 0.61 +0.1 47,813 - MIT1002_04186 0.65 +0.5 47,833 - MIT1002_04186 0.68 -1.1 47,867 + MIT1002_04186 0.72 +0.3 47,894 - MIT1002_04186 0.76 +0.2 47,963 - MIT1002_04186 0.86 -0.7 48,002 + +0.5 48,111 + +0.7 48,433 + -1.0 48,504 - +2.1 48,537 + -0.9 48,537 + -0.1 48,537 + +1.6 48,537 + +0.0 48,537 + +0.2 48,537 + -0.2 48,537 + -0.8 48,537 + +1.3 48,537 + -0.1 48,537 + -0.7 48,537 + +0.1 48,537 + +0.1 48,537 + -0.4 48,545 - -0.0 48,545 - +0.4 48,545 - +1.0 48,545 - +0.7 48,545 - -1.5 48,545 - -1.6 48,545 - +0.5 48,545 - +0.3 48,545 - +0.4 48,545 - -0.3 48,545 - -2.3 48,545 - +0.4 48,545 - +1.0 48,555 - -2.4 48,623 - +0.4 48,684 - +1.1 48,707 + +1.4 48,741 + -2.6 48,741 + +0.7 48,741 + -0.3 48,741 + +0.2 48,741 + -0.6 48,741 + -0.3 48,741 + +0.2 48,749 - -0.1 48,749 - -0.5 48,749 - -3.5 48,749 - -0.8 48,749 - -0.2 48,749 - +0.7 48,751 + +0.9 48,761 - +0.3 48,763 + -0.8 48,797 + -0.7 48,797 + +0.4 48,797 + -1.7 48,805 - +1.7 48,805 - +1.0 48,805 - +0.4 48,805 - -0.1 48,852 + -0.1 48,860 - +0.5 48,877 - -0.1 48,900 - +0.2 48,918 - -0.0 48,970 - +0.5 49,008 + +0.5 49,020 + -0.6 49,043 - +1.5
Or see this region's nucleotide sequence