Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03954

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment B, time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment B, time point 1
4,435,792	+		MIT1002_03953	0.18	+1.6
4,435,792	+		MIT1002_03953	0.18	-0.3
4,435,792	+		MIT1002_03953	0.18	+0.3
4,435,836	-		MIT1002_03953	0.23	-1.2
4,435,892	+		MIT1002_03953	0.30	+0.5
4,435,900	-		MIT1002_03953	0.31	-0.5
4,435,918	+		MIT1002_03953	0.34	+2.0
4,436,160	-		MIT1002_03953	0.64	-0.1
4,436,165	-		MIT1002_03953	0.65	+0.4
4,436,195	-		MIT1002_03953	0.69	+0.2
4,436,195	-		MIT1002_03953	0.69	-0.4
4,436,195	-		MIT1002_03953	0.69	-0.5
4,436,239	-		MIT1002_03953	0.74	+1.7
4,436,300	+		MIT1002_03953	0.82	-2.5
4,436,300	+		MIT1002_03953	0.82	+1.2
4,436,308	-		MIT1002_03953	0.83	+1.2
4,436,310	+		MIT1002_03953	0.83	-0.2
4,436,412	-				+1.4
4,436,412	-				+1.2
4,436,422	-				-0.6
4,436,422	-				+0.9
4,436,431	+				-0.3
4,436,431	+				-0.3
4,436,448	+				-0.4
4,436,449	-				+0.2
4,436,503	+				-0.0
4,436,511	-				+0.1
4,436,511	-				+0.0
4,436,511	-				-0.1
4,436,513	-				+0.3
4,436,549	+				-1.2
4,436,591	-				+0.3
4,436,611	+				+0.2
4,436,680	-				+0.1
4,436,792	+				-1.6
4,436,792	+				-2.0
4,436,799	-				+0.1
4,436,799	-				+0.4
4,436,813	-				-1.0
4,436,813	-				+0.1
4,436,837	+				-0.5
4,436,837	+				-1.3
4,436,850	+				-1.1
4,436,967	+		MIT1002_03954	0.11	+0.8
4,436,975	-		MIT1002_03954	0.12	+0.6
4,436,979	-		MIT1002_03954	0.12	+0.7
4,437,090	-		MIT1002_03954	0.19	-0.7
4,437,107	+		MIT1002_03954	0.20	+0.3
4,437,112	+		MIT1002_03954	0.20	+0.9
4,437,115	-		MIT1002_03954	0.21	+0.0
4,437,162	-		MIT1002_03954	0.23	+0.2
4,437,282	+		MIT1002_03954	0.31	-0.2
4,437,282	+		MIT1002_03954	0.31	-0.7
4,437,290	-		MIT1002_03954	0.31	-0.7
4,437,299	-		MIT1002_03954	0.32	-1.0
4,437,318	+		MIT1002_03954	0.33	+1.0
4,437,366	+		MIT1002_03954	0.36	-0.0
4,437,374	-		MIT1002_03954	0.37	-0.8
4,437,374	-		MIT1002_03954	0.37	-0.1
4,437,393	-		MIT1002_03954	0.38	+1.2
4,437,445	-		MIT1002_03954	0.41	+1.4
4,437,445	-		MIT1002_03954	0.41	+0.6
4,437,484	+		MIT1002_03954	0.43	-0.3
4,437,512	+		MIT1002_03954	0.45	+0.1
4,437,543	+		MIT1002_03954	0.47	-0.1
4,437,557	+		MIT1002_03954	0.48	+1.0
4,437,563	+		MIT1002_03954	0.48	-0.3
4,437,637	-		MIT1002_03954	0.53	+0.4
4,437,661	+		MIT1002_03954	0.54	+0.2
4,437,684	-		MIT1002_03954	0.56	+0.2
4,437,684	-		MIT1002_03954	0.56	+0.7
4,437,684	-		MIT1002_03954	0.56	-1.3
4,437,707	+		MIT1002_03954	0.57	+0.0
4,437,726	+		MIT1002_03954	0.58	+0.2
4,437,732	+		MIT1002_03954	0.59	+0.2
4,437,732	+		MIT1002_03954	0.59	+0.7
4,437,740	-		MIT1002_03954	0.59	+0.5
4,437,759	-		MIT1002_03954	0.60	+0.7
4,437,889	+		MIT1002_03954	0.68	+0.1
4,437,902	-		MIT1002_03954	0.69	+1.0
4,438,055	+		MIT1002_03954	0.79	-0.1
4,438,098	+		MIT1002_03954	0.81	-0.6
4,438,130	-		MIT1002_03954	0.83	+0.8
4,438,196	+		MIT1002_03954	0.87	+0.5
4,438,196	+		MIT1002_03954	0.87	-0.4
4,438,196	+		MIT1002_03954	0.87	-0.1
4,438,204	-		MIT1002_03954	0.88	+0.1
4,438,251	+				+3.4
4,438,279	+				-1.1
4,438,286	+				-2.0
4,438,358	+				+0.2
4,438,378	-				-0.2
4,438,378	-				-0.2
4,438,388	-				-0.3
4,438,416	+				+0.2
4,438,476	-				+0.9
4,438,661	+		MIT1002_03955	0.17	-0.4
4,438,669	-		MIT1002_03955	0.18	-0.3
4,438,671	+		MIT1002_03955	0.18	-0.8
4,438,687	-		MIT1002_03955	0.20	+1.2
4,438,738	-		MIT1002_03955	0.27	+0.1
4,438,793	-		MIT1002_03955	0.34	-1.3
4,438,823	-		MIT1002_03955	0.38	-3.5
4,439,047	-		MIT1002_03955	0.68	-0.9
4,439,059	-		MIT1002_03955	0.69	-0.8
4,439,060	-		MIT1002_03955	0.69	-0.3
4,439,201	+		MIT1002_03955	0.88	-0.8
4,439,214	-		MIT1002_03955	0.90	+0.3
4,439,276	+				-0.9
4,439,276	+				-0.9
4,439,276	+				+1.5
4,439,324	+				+0.2
4,439,365	+				-0.1