Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03846

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment B, time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment B, time point 1
4,307,481	+		MIT1002_03845	0.37	+0.2
4,307,530	+		MIT1002_03845	0.40	+0.8
4,307,572	+		MIT1002_03845	0.43	-0.2
4,307,582	+		MIT1002_03845	0.44	-0.7
4,307,621	+		MIT1002_03845	0.46	+0.1
4,307,662	+		MIT1002_03845	0.49	-0.5
4,307,728	+		MIT1002_03845	0.53	-0.0
4,307,728	+		MIT1002_03845	0.53	-0.0
4,307,775	+		MIT1002_03845	0.56	-0.4
4,307,839	-		MIT1002_03845	0.60	-0.4
4,307,848	+		MIT1002_03845	0.60	+0.1
4,307,848	+		MIT1002_03845	0.60	+0.3
4,307,848	+		MIT1002_03845	0.60	+0.6
4,307,856	-		MIT1002_03845	0.61	-0.5
4,307,856	-		MIT1002_03845	0.61	-0.1
4,307,868	-		MIT1002_03845	0.62	+0.2
4,307,985	+		MIT1002_03845	0.69	+0.9
4,307,993	-		MIT1002_03845	0.69	-0.7
4,307,993	-		MIT1002_03845	0.69	-0.8
4,308,000	+		MIT1002_03845	0.70	-0.0
4,308,065	+		MIT1002_03845	0.74	-0.1
4,308,073	-		MIT1002_03845	0.74	+0.5
4,308,073	-		MIT1002_03845	0.74	+0.6
4,308,156	+		MIT1002_03845	0.80	-2.5
4,308,170	+		MIT1002_03845	0.81	+0.5
4,308,170	+		MIT1002_03845	0.81	-0.4
4,308,178	-		MIT1002_03845	0.81	+0.3
4,308,232	-		MIT1002_03845	0.84	+0.6
4,308,307	+		MIT1002_03845	0.89	-0.0
4,308,535	+				+1.0
4,308,535	+				-0.5
4,308,543	-				-0.4
4,308,549	-				+0.4
4,308,588	-				-1.2
4,308,590	+				+0.8
4,308,715	-		MIT1002_03846	0.13	+0.1
4,308,860	-		MIT1002_03846	0.21	+0.6
4,308,863	+		MIT1002_03846	0.21	-0.5
4,308,933	+		MIT1002_03846	0.25	+1.1
4,308,942	+		MIT1002_03846	0.25	-0.0
4,309,027	+		MIT1002_03846	0.30	-0.4
4,309,027	+		MIT1002_03846	0.30	-0.1
4,309,027	+		MIT1002_03846	0.30	-0.2
4,309,035	-		MIT1002_03846	0.30	-1.0
4,309,035	-		MIT1002_03846	0.30	-2.1
4,309,035	-		MIT1002_03846	0.30	-1.2
4,309,059	+		MIT1002_03846	0.31	+1.3
4,309,067	+		MIT1002_03846	0.32	-1.5
4,309,067	-		MIT1002_03846	0.32	-0.1
4,309,068	+		MIT1002_03846	0.32	-1.2
4,309,074	+		MIT1002_03846	0.32	+0.2
4,309,084	+		MIT1002_03846	0.33	+0.2
4,309,092	-		MIT1002_03846	0.33	+0.0
4,309,158	-		MIT1002_03846	0.36	-0.0
4,309,158	-		MIT1002_03846	0.36	+2.2
4,309,166	-		MIT1002_03846	0.37	-1.6
4,309,199	-		MIT1002_03846	0.39	-0.4
4,309,212	+		MIT1002_03846	0.39	-0.2
4,309,231	+		MIT1002_03846	0.40	-0.2
4,309,272	-		MIT1002_03846	0.42	-1.2
4,309,276	+		MIT1002_03846	0.43	-0.7
4,309,285	+		MIT1002_03846	0.43	-0.1
4,309,306	-		MIT1002_03846	0.44	-0.4
4,309,344	+		MIT1002_03846	0.46	-0.5
4,309,418	+		MIT1002_03846	0.50	-0.3
4,309,477	+		MIT1002_03846	0.53	-1.1
4,309,513	+		MIT1002_03846	0.55	-0.5
4,309,546	-		MIT1002_03846	0.57	+0.6
4,309,571	+		MIT1002_03846	0.58	-0.0
4,309,628	-		MIT1002_03846	0.61	+0.8
4,309,708	-		MIT1002_03846	0.66	+0.6
4,309,776	+		MIT1002_03846	0.69	+0.1
4,309,787	+		MIT1002_03846	0.70	+0.0
4,309,787	+		MIT1002_03846	0.70	+0.1
4,309,854	-		MIT1002_03846	0.73	+0.6
4,309,854	-		MIT1002_03846	0.73	-0.6
4,309,886	+		MIT1002_03846	0.75	-0.2
4,310,042	-		MIT1002_03846	0.83	-0.1
4,310,056	+		MIT1002_03846	0.84	-0.6
4,310,056	+		MIT1002_03846	0.84	+0.1
4,310,056	+		MIT1002_03846	0.84	-0.0
4,310,147	+		MIT1002_03846	0.89	-0.4
4,310,172	+				+1.4
4,310,180	+				+0.2
4,310,185	+				-0.6
4,310,193	-				-1.3
4,310,215	-				-1.8
4,310,273	+				+0.7
4,310,280	+				-0.2
4,310,306	+				-1.0
4,310,319	+				-0.4
4,310,319	+				+0.3
4,310,319	+				-1.0
4,310,327	-				-1.6
4,310,474	-				-0.7
4,310,485	-				+0.6
4,310,498	+				+0.6
4,310,529	-				-1.2
4,310,660	-				-1.8
4,310,671	+				+2.7
4,310,679	-				+0.2
4,310,681	-				+0.5
4,310,724	+				-0.3
4,310,724	+				-0.5
4,310,732	-				+0.1
4,310,732	-				+0.2
4,310,732	-				-0.8
4,310,732	-				-0.4
4,310,742	+				+0.3
4,310,750	-				+0.6
4,310,899	+		MIT1002_03848	0.21	-1.5
4,310,907	-		MIT1002_03848	0.22	-0.0
4,310,907	-		MIT1002_03848	0.22	-0.5
4,310,964	+		MIT1002_03848	0.27	+1.2
4,310,964	+		MIT1002_03848	0.27	-0.1
4,310,964	+		MIT1002_03848	0.27	-0.4
4,310,964	+		MIT1002_03848	0.27	+1.1
4,310,964	+		MIT1002_03848	0.27	+0.7
4,310,972	-		MIT1002_03848	0.27	-0.2
4,310,972	-		MIT1002_03848	0.27	+1.3
4,310,972	-		MIT1002_03848	0.27	-1.3
4,310,972	-		MIT1002_03848	0.27	+0.2
4,310,972	-		MIT1002_03848	0.27	-1.3
4,310,975	+		MIT1002_03848	0.28	+0.1
4,310,977	+		MIT1002_03848	0.28	-0.1
4,310,985	+		MIT1002_03848	0.28	+0.9
4,311,019	+		MIT1002_03848	0.31	+0.1
4,311,032	+		MIT1002_03848	0.33	+0.8
4,311,040	-		MIT1002_03848	0.33	-0.1
4,311,133	+		MIT1002_03848	0.42	-0.4
4,311,158	+		MIT1002_03848	0.44	-0.5
4,311,166	-		MIT1002_03848	0.44	-0.2
4,311,173	+		MIT1002_03848	0.45	-0.1
4,311,182	-		MIT1002_03848	0.46	+0.4
4,311,187	-		MIT1002_03848	0.46	-0.6
4,311,188	+		MIT1002_03848	0.46	-3.4
4,311,204	+		MIT1002_03848	0.48	+0.8
4,311,258	-		MIT1002_03848	0.53	+1.3
4,311,280	+		MIT1002_03848	0.54	-0.1
4,311,280	+		MIT1002_03848	0.54	-1.4
4,311,288	-		MIT1002_03848	0.55	-0.6