Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment B, time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_03830 and MIT1002_03831 are separated by 99 nucleotides MIT1002_03831 and MIT1002_03832 are separated by 116 nucleotides MIT1002_03832 and MIT1002_03833 are separated by 16 nucleotides
MIT1002_03830: MIT1002_03830 - HTH-type transcriptional repressor YvoA, at 4,279,565 to 4,280,314
_03830
MIT1002_03831: MIT1002_03831 - Sulfite exporter TauE/SafE, at 4,280,414 to 4,281,166
_03831
MIT1002_03832: MIT1002_03832 - Alpha-xylosidase, at 4,281,283 to 4,283,349
_03832
MIT1002_03833: MIT1002_03833 - putative symporter YidK, at 4,283,366 to 4,285,093
_03833
Position (kb) 4281
4282
4283
4284 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4280.312 kb on + strand at 4280.325 kb on - strand at 4280.386 kb on + strand at 4280.447 kb on + strand at 4280.449 kb on + strand at 4280.465 kb on + strand at 4280.475 kb on - strand at 4280.490 kb on + strand, within MIT1002_03831 at 4280.492 kb on - strand, within MIT1002_03831 at 4280.504 kb on - strand, within MIT1002_03831 at 4280.522 kb on - strand, within MIT1002_03831 at 4280.546 kb on + strand, within MIT1002_03831 at 4280.553 kb on + strand, within MIT1002_03831 at 4280.553 kb on + strand, within MIT1002_03831 at 4280.561 kb on - strand, within MIT1002_03831 at 4280.561 kb on - strand, within MIT1002_03831 at 4280.592 kb on + strand, within MIT1002_03831 at 4280.628 kb on - strand, within MIT1002_03831 at 4280.647 kb on + strand, within MIT1002_03831 at 4280.647 kb on + strand, within MIT1002_03831 at 4280.652 kb on + strand, within MIT1002_03831 at 4280.654 kb on + strand, within MIT1002_03831 at 4280.655 kb on - strand, within MIT1002_03831 at 4280.660 kb on - strand, within MIT1002_03831 at 4280.662 kb on - strand, within MIT1002_03831 at 4280.662 kb on - strand, within MIT1002_03831 at 4280.682 kb on - strand, within MIT1002_03831 at 4280.922 kb on + strand, within MIT1002_03831 at 4280.922 kb on + strand, within MIT1002_03831 at 4280.930 kb on + strand, within MIT1002_03831 at 4280.930 kb on - strand, within MIT1002_03831 at 4280.944 kb on - strand, within MIT1002_03831 at 4280.954 kb on - strand, within MIT1002_03831 at 4281.000 kb on - strand, within MIT1002_03831 at 4281.063 kb on - strand, within MIT1002_03831 at 4281.101 kb on + strand at 4281.107 kb on + strand at 4281.115 kb on - strand at 4281.132 kb on + strand at 4281.140 kb on - strand at 4281.140 kb on - strand at 4281.140 kb on - strand at 4281.146 kb on - strand at 4281.146 kb on - strand at 4281.186 kb on - strand at 4281.270 kb on + strand at 4281.299 kb on + strand at 4281.324 kb on + strand at 4281.341 kb on + strand at 4281.346 kb on - strand at 4281.396 kb on - strand at 4281.427 kb on + strand at 4281.479 kb on + strand at 4281.502 kb on - strand, within MIT1002_03832 at 4281.502 kb on - strand, within MIT1002_03832 at 4281.508 kb on - strand, within MIT1002_03832 at 4281.589 kb on - strand, within MIT1002_03832 at 4281.695 kb on + strand, within MIT1002_03832 at 4281.695 kb on + strand, within MIT1002_03832 at 4281.695 kb on + strand, within MIT1002_03832 at 4281.695 kb on + strand, within MIT1002_03832 at 4281.703 kb on - strand, within MIT1002_03832 at 4281.752 kb on - strand, within MIT1002_03832 at 4281.845 kb on + strand, within MIT1002_03832 at 4281.853 kb on - strand, within MIT1002_03832 at 4281.875 kb on + strand, within MIT1002_03832 at 4281.883 kb on - strand, within MIT1002_03832 at 4281.883 kb on - strand, within MIT1002_03832 at 4281.890 kb on + strand, within MIT1002_03832 at 4281.898 kb on - strand, within MIT1002_03832 at 4281.908 kb on - strand, within MIT1002_03832 at 4281.981 kb on - strand, within MIT1002_03832 at 4281.988 kb on + strand, within MIT1002_03832 at 4281.988 kb on + strand, within MIT1002_03832 at 4281.988 kb on + strand, within MIT1002_03832 at 4281.995 kb on + strand, within MIT1002_03832 at 4281.995 kb on + strand, within MIT1002_03832 at 4282.017 kb on + strand, within MIT1002_03832 at 4282.030 kb on - strand, within MIT1002_03832 at 4282.044 kb on - strand, within MIT1002_03832 at 4282.050 kb on - strand, within MIT1002_03832 at 4282.057 kb on - strand, within MIT1002_03832 at 4282.077 kb on - strand, within MIT1002_03832 at 4282.098 kb on + strand, within MIT1002_03832 at 4282.212 kb on + strand, within MIT1002_03832 at 4282.212 kb on + strand, within MIT1002_03832 at 4282.225 kb on - strand, within MIT1002_03832 at 4282.324 kb on + strand, within MIT1002_03832 at 4282.356 kb on - strand, within MIT1002_03832 at 4282.448 kb on + strand, within MIT1002_03832 at 4282.486 kb on + strand, within MIT1002_03832 at 4282.590 kb on - strand, within MIT1002_03832 at 4282.619 kb on + strand, within MIT1002_03832 at 4282.621 kb on + strand, within MIT1002_03832 at 4282.644 kb on + strand, within MIT1002_03832 at 4282.644 kb on + strand, within MIT1002_03832 at 4282.695 kb on + strand, within MIT1002_03832 at 4282.703 kb on - strand, within MIT1002_03832 at 4282.764 kb on - strand, within MIT1002_03832 at 4282.778 kb on - strand, within MIT1002_03832 at 4282.778 kb on - strand, within MIT1002_03832 at 4282.778 kb on - strand, within MIT1002_03832 at 4282.779 kb on - strand, within MIT1002_03832 at 4282.867 kb on + strand, within MIT1002_03832 at 4282.867 kb on - strand, within MIT1002_03832 at 4282.901 kb on + strand, within MIT1002_03832 at 4282.901 kb on + strand, within MIT1002_03832 at 4282.901 kb on + strand, within MIT1002_03832 at 4282.901 kb on + strand, within MIT1002_03832 at 4282.901 kb on + strand, within MIT1002_03832 at 4282.901 kb on + strand, within MIT1002_03832 at 4282.901 kb on + strand, within MIT1002_03832 at 4282.901 kb on + strand, within MIT1002_03832 at 4282.901 kb on + strand, within MIT1002_03832 at 4282.901 kb on + strand, within MIT1002_03832 at 4282.901 kb on + strand, within MIT1002_03832 at 4282.901 kb on + strand, within MIT1002_03832 at 4282.901 kb on + strand, within MIT1002_03832 at 4282.901 kb on + strand, within MIT1002_03832 at 4282.901 kb on + strand, within MIT1002_03832 at 4282.901 kb on + strand, within MIT1002_03832 at 4282.909 kb on - strand, within MIT1002_03832 at 4282.909 kb on - strand, within MIT1002_03832 at 4282.909 kb on - strand, within MIT1002_03832 at 4282.909 kb on - strand, within MIT1002_03832 at 4282.909 kb on - strand, within MIT1002_03832 at 4282.909 kb on - strand, within MIT1002_03832 at 4282.909 kb on - strand, within MIT1002_03832 at 4282.909 kb on - strand, within MIT1002_03832 at 4282.909 kb on - strand, within MIT1002_03832 at 4282.909 kb on - strand, within MIT1002_03832 at 4282.909 kb on - strand, within MIT1002_03832 at 4282.909 kb on - strand, within MIT1002_03832 at 4282.909 kb on - strand, within MIT1002_03832 at 4282.909 kb on - strand, within MIT1002_03832 at 4282.909 kb on - strand, within MIT1002_03832 at 4282.912 kb on + strand, within MIT1002_03832 at 4282.912 kb on + strand, within MIT1002_03832 at 4282.918 kb on + strand, within MIT1002_03832 at 4282.918 kb on + strand, within MIT1002_03832 at 4282.926 kb on - strand, within MIT1002_03832 at 4282.926 kb on - strand, within MIT1002_03832 at 4283.050 kb on + strand, within MIT1002_03832 at 4283.050 kb on + strand, within MIT1002_03832 at 4283.050 kb on + strand, within MIT1002_03832 at 4283.050 kb on + strand, within MIT1002_03832 at 4283.050 kb on + strand, within MIT1002_03832 at 4283.051 kb on + strand, within MIT1002_03832 at 4283.058 kb on - strand, within MIT1002_03832 at 4283.060 kb on + strand, within MIT1002_03832 at 4283.068 kb on - strand, within MIT1002_03832 at 4283.092 kb on - strand, within MIT1002_03832 at 4283.092 kb on - strand, within MIT1002_03832 at 4283.108 kb on + strand, within MIT1002_03832 at 4283.116 kb on - strand, within MIT1002_03832 at 4283.173 kb on + strand at 4283.291 kb on + strand at 4283.305 kb on - strand at 4283.342 kb on - strand at 4283.344 kb on + strand at 4283.347 kb on - strand at 4283.352 kb on - strand at 4283.376 kb on + strand at 4283.376 kb on + strand at 4283.384 kb on - strand at 4283.397 kb on - strand at 4283.486 kb on + strand at 4283.522 kb on - strand at 4283.567 kb on + strand, within MIT1002_03833 at 4283.581 kb on - strand, within MIT1002_03833 at 4283.776 kb on + strand, within MIT1002_03833 at 4283.782 kb on - strand, within MIT1002_03833 at 4283.818 kb on + strand, within MIT1002_03833 at 4283.850 kb on + strand, within MIT1002_03833 at 4283.931 kb on - strand, within MIT1002_03833 at 4283.954 kb on - strand, within MIT1002_03833 at 4283.959 kb on + strand, within MIT1002_03833 at 4284.012 kb on + strand, within MIT1002_03833 at 4284.031 kb on - strand, within MIT1002_03833 at 4284.034 kb on - strand, within MIT1002_03833 at 4284.065 kb on + strand, within MIT1002_03833 at 4284.077 kb on + strand, within MIT1002_03833 at 4284.121 kb on - strand, within MIT1002_03833 at 4284.141 kb on + strand, within MIT1002_03833 at 4284.143 kb on + strand, within MIT1002_03833 at 4284.280 kb on - strand, within MIT1002_03833 at 4284.324 kb on - strand, within MIT1002_03833 at 4284.324 kb on - strand, within MIT1002_03833 at 4284.324 kb on - strand, within MIT1002_03833
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment B, time point 1 remove 4,280,312 + -0.9 4,280,325 - +0.0 4,280,386 + -3.2 4,280,447 + -0.2 4,280,449 + -0.3 4,280,465 + -0.4 4,280,475 - -1.3 4,280,490 + MIT1002_03831 0.10 +0.3 4,280,492 - MIT1002_03831 0.10 +0.2 4,280,504 - MIT1002_03831 0.12 +0.2 4,280,522 - MIT1002_03831 0.14 +0.5 4,280,546 + MIT1002_03831 0.18 -0.9 4,280,553 + MIT1002_03831 0.18 -2.0 4,280,553 + MIT1002_03831 0.18 -0.0 4,280,561 - MIT1002_03831 0.20 -0.6 4,280,561 - MIT1002_03831 0.20 -1.2 4,280,592 + MIT1002_03831 0.24 +0.2 4,280,628 - MIT1002_03831 0.28 -0.0 4,280,647 + MIT1002_03831 0.31 -1.1 4,280,647 + MIT1002_03831 0.31 -0.1 4,280,652 + MIT1002_03831 0.32 -0.7 4,280,654 + MIT1002_03831 0.32 +0.5 4,280,655 - MIT1002_03831 0.32 +0.3 4,280,660 - MIT1002_03831 0.33 +0.2 4,280,662 - MIT1002_03831 0.33 -1.7 4,280,662 - MIT1002_03831 0.33 -1.0 4,280,682 - MIT1002_03831 0.36 +0.5 4,280,922 + MIT1002_03831 0.67 -1.7 4,280,922 + MIT1002_03831 0.67 +0.7 4,280,930 + MIT1002_03831 0.69 -0.1 4,280,930 - MIT1002_03831 0.69 +0.7 4,280,944 - MIT1002_03831 0.70 +0.8 4,280,954 - MIT1002_03831 0.72 -1.7 4,281,000 - MIT1002_03831 0.78 -0.1 4,281,063 - MIT1002_03831 0.86 +0.0 4,281,101 + +0.6 4,281,107 + +0.4 4,281,115 - +1.5 4,281,132 + +1.2 4,281,140 - -0.4 4,281,140 - -0.1 4,281,140 - +0.3 4,281,146 - +0.1 4,281,146 - +0.1 4,281,186 - +0.1 4,281,270 + +0.6 4,281,299 + -1.1 4,281,324 + +1.9 4,281,341 + +0.2 4,281,346 - -0.4 4,281,396 - +0.5 4,281,427 + +0.1 4,281,479 + -0.2 4,281,502 - MIT1002_03832 0.11 +0.2 4,281,502 - MIT1002_03832 0.11 +1.2 4,281,508 - MIT1002_03832 0.11 -0.7 4,281,589 - MIT1002_03832 0.15 -0.0 4,281,695 + MIT1002_03832 0.20 -0.1 4,281,695 + MIT1002_03832 0.20 +1.5 4,281,695 + MIT1002_03832 0.20 +0.1 4,281,695 + MIT1002_03832 0.20 -1.6 4,281,703 - MIT1002_03832 0.20 -0.2 4,281,752 - MIT1002_03832 0.23 -0.4 4,281,845 + MIT1002_03832 0.27 +1.5 4,281,853 - MIT1002_03832 0.28 +1.0 4,281,875 + MIT1002_03832 0.29 -3.1 4,281,883 - MIT1002_03832 0.29 -2.0 4,281,883 - MIT1002_03832 0.29 -1.7 4,281,890 + MIT1002_03832 0.29 +0.0 4,281,898 - MIT1002_03832 0.30 -0.6 4,281,908 - MIT1002_03832 0.30 -0.2 4,281,981 - MIT1002_03832 0.34 +0.4 4,281,988 + MIT1002_03832 0.34 -0.9 4,281,988 + MIT1002_03832 0.34 +0.1 4,281,988 + MIT1002_03832 0.34 -0.7 4,281,995 + MIT1002_03832 0.34 -0.9 4,281,995 + MIT1002_03832 0.34 +0.3 4,282,017 + MIT1002_03832 0.36 -1.1 4,282,030 - MIT1002_03832 0.36 -0.9 4,282,044 - MIT1002_03832 0.37 +0.6 4,282,050 - MIT1002_03832 0.37 +0.5 4,282,057 - MIT1002_03832 0.37 +0.4 4,282,077 - MIT1002_03832 0.38 -0.6 4,282,098 + MIT1002_03832 0.39 -0.2 4,282,212 + MIT1002_03832 0.45 -0.3 4,282,212 + MIT1002_03832 0.45 +1.4 4,282,225 - MIT1002_03832 0.46 -1.2 4,282,324 + MIT1002_03832 0.50 +0.2 4,282,356 - MIT1002_03832 0.52 +0.5 4,282,448 + MIT1002_03832 0.56 +0.2 4,282,486 + MIT1002_03832 0.58 +0.4 4,282,590 - MIT1002_03832 0.63 -1.0 4,282,619 + MIT1002_03832 0.65 -0.0 4,282,621 + MIT1002_03832 0.65 +0.5 4,282,644 + MIT1002_03832 0.66 +0.3 4,282,644 + MIT1002_03832 0.66 -2.2 4,282,695 + MIT1002_03832 0.68 +0.1 4,282,703 - MIT1002_03832 0.69 -1.7 4,282,764 - MIT1002_03832 0.72 -0.1 4,282,778 - MIT1002_03832 0.72 +0.6 4,282,778 - MIT1002_03832 0.72 +0.8 4,282,778 - MIT1002_03832 0.72 -1.9 4,282,779 - MIT1002_03832 0.72 -0.5 4,282,867 + MIT1002_03832 0.77 +0.3 4,282,867 - MIT1002_03832 0.77 -0.4 4,282,901 + MIT1002_03832 0.78 -0.5 4,282,901 + MIT1002_03832 0.78 +0.8 4,282,901 + MIT1002_03832 0.78 -1.3 4,282,901 + MIT1002_03832 0.78 -0.7 4,282,901 + MIT1002_03832 0.78 -0.0 4,282,901 + MIT1002_03832 0.78 +0.1 4,282,901 + MIT1002_03832 0.78 +0.9 4,282,901 + MIT1002_03832 0.78 -1.6 4,282,901 + MIT1002_03832 0.78 -2.3 4,282,901 + MIT1002_03832 0.78 +0.7 4,282,901 + MIT1002_03832 0.78 +1.6 4,282,901 + MIT1002_03832 0.78 -1.6 4,282,901 + MIT1002_03832 0.78 -1.8 4,282,901 + MIT1002_03832 0.78 -0.2 4,282,901 + MIT1002_03832 0.78 +0.6 4,282,901 + MIT1002_03832 0.78 -0.8 4,282,909 - MIT1002_03832 0.79 -0.5 4,282,909 - MIT1002_03832 0.79 +1.2 4,282,909 - MIT1002_03832 0.79 -1.5 4,282,909 - MIT1002_03832 0.79 -0.9 4,282,909 - MIT1002_03832 0.79 +0.1 4,282,909 - MIT1002_03832 0.79 +0.1 4,282,909 - MIT1002_03832 0.79 -0.6 4,282,909 - MIT1002_03832 0.79 +0.3 4,282,909 - MIT1002_03832 0.79 +0.1 4,282,909 - MIT1002_03832 0.79 +0.7 4,282,909 - MIT1002_03832 0.79 +0.3 4,282,909 - MIT1002_03832 0.79 +0.4 4,282,909 - MIT1002_03832 0.79 -0.3 4,282,909 - MIT1002_03832 0.79 -2.6 4,282,909 - MIT1002_03832 0.79 +0.6 4,282,912 + MIT1002_03832 0.79 +1.5 4,282,912 + MIT1002_03832 0.79 -0.7 4,282,918 + MIT1002_03832 0.79 +0.3 4,282,918 + MIT1002_03832 0.79 +0.5 4,282,926 - MIT1002_03832 0.79 -0.1 4,282,926 - MIT1002_03832 0.79 +0.1 4,283,050 + MIT1002_03832 0.85 -0.3 4,283,050 + MIT1002_03832 0.85 -3.2 4,283,050 + MIT1002_03832 0.85 +1.0 4,283,050 + MIT1002_03832 0.85 -0.5 4,283,050 + MIT1002_03832 0.85 +0.6 4,283,051 + MIT1002_03832 0.86 -1.4 4,283,058 - MIT1002_03832 0.86 -1.0 4,283,060 + MIT1002_03832 0.86 +0.4 4,283,068 - MIT1002_03832 0.86 +1.1 4,283,092 - MIT1002_03832 0.88 -1.4 4,283,092 - MIT1002_03832 0.88 -1.1 4,283,108 + MIT1002_03832 0.88 -0.2 4,283,116 - MIT1002_03832 0.89 +0.2 4,283,173 + +1.7 4,283,291 + +0.3 4,283,305 - -0.8 4,283,342 - +1.7 4,283,344 + +0.1 4,283,347 - -0.1 4,283,352 - +0.1 4,283,376 + +0.8 4,283,376 + +0.8 4,283,384 - -1.3 4,283,397 - +0.1 4,283,486 + +3.7 4,283,522 - -2.8 4,283,567 + MIT1002_03833 0.12 +0.1 4,283,581 - MIT1002_03833 0.12 +0.3 4,283,776 + MIT1002_03833 0.24 -0.9 4,283,782 - MIT1002_03833 0.24 -0.0 4,283,818 + MIT1002_03833 0.26 -0.3 4,283,850 + MIT1002_03833 0.28 +0.1 4,283,931 - MIT1002_03833 0.33 -1.1 4,283,954 - MIT1002_03833 0.34 +0.4 4,283,959 + MIT1002_03833 0.34 +0.6 4,284,012 + MIT1002_03833 0.37 -0.5 4,284,031 - MIT1002_03833 0.38 -0.1 4,284,034 - MIT1002_03833 0.39 -0.8 4,284,065 + MIT1002_03833 0.40 -0.6 4,284,077 + MIT1002_03833 0.41 +0.2 4,284,121 - MIT1002_03833 0.44 -0.1 4,284,141 + MIT1002_03833 0.45 +0.4 4,284,143 + MIT1002_03833 0.45 -2.9 4,284,280 - MIT1002_03833 0.53 +0.2 4,284,324 - MIT1002_03833 0.55 +0.6 4,284,324 - MIT1002_03833 0.55 +0.1 4,284,324 - MIT1002_03833 0.55 +0.9
Or see this region's nucleotide sequence