Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02793

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment B, time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_02792 and MIT1002_02793 are separated by 129 nucleotidesMIT1002_02793 and MIT1002_02794 are separated by 271 nucleotidesMIT1002_02794 and MIT1002_02795 are separated by 59 nucleotides MIT1002_02792: MIT1002_02792 - hypothetical protein, at 3,096,762 to 3,098,090 _02792 MIT1002_02793: MIT1002_02793 - Nucleoside diphosphate kinase, at 3,098,220 to 3,098,651 _02793 MIT1002_02794: MIT1002_02794 - Cysteine desulfuration protein SufE, at 3,098,923 to 3,099,333 _02794 MIT1002_02795: MIT1002_02795 - putative FeS assembly SUF system protein SufT, at 3,099,393 to 3,099,926 _02795 Position (kb) 3098 3099Strain fitness (log2 ratio) -2 -1 0 1at 3098.238 kb on - strandat 3098.251 kb on + strandat 3098.682 kb on - strandat 3098.840 kb on + strandat 3098.848 kb on - strandat 3098.854 kb on + strandat 3098.867 kb on - strandat 3098.872 kb on - strandat 3099.417 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment B, time point 1
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3,098,238 - +0.7
3,098,251 + -0.9
3,098,682 - -0.1
3,098,840 + -2.1
3,098,848 - +0.4
3,098,854 + +0.3
3,098,867 - -0.2
3,098,872 - +0.1
3,099,417 - -1.7

Or see this region's nucleotide sequence