Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01812

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment B, time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment B, time point 1
2,018,018	+		MIT1002_01811	0.71	-0.4
2,018,201	+		MIT1002_01811	0.78	-2.4
2,018,288	-		MIT1002_01811	0.81	+0.3
2,018,288	-		MIT1002_01811	0.81	-0.7
2,018,325	-		MIT1002_01811	0.83	-0.1
2,018,342	-		MIT1002_01811	0.83	-1.5
2,018,342	-		MIT1002_01811	0.83	-1.8
2,018,404	+		MIT1002_01811	0.86	+0.4
2,018,463	+		MIT1002_01811	0.88	-1.1
2,018,471	-		MIT1002_01811	0.88	-0.9
2,018,541	+				-0.6
2,018,564	-				+0.4
2,018,716	+				-0.8
2,018,721	+				-1.6
2,018,729	-				-0.6
2,018,729	-				+0.2
2,018,733	+				-0.0
2,018,734	-				+0.6
2,018,734	-				+1.8
2,018,756	+				-2.0
2,018,762	-				-2.0
2,018,764	-				+0.1
2,018,764	-				+0.1
2,018,781	-				-0.9
2,018,823	+				+0.7
2,018,854	-				-0.5
2,018,899	-				+0.8
2,018,919	-				+1.1
2,018,933	+				-1.4
2,019,049	+				-0.8
2,019,049	+				+0.9
2,019,049	+				-1.1
2,019,057	-				+0.8
2,019,057	-				-0.6
2,019,063	+				-2.0
2,019,152	+				-2.5
2,019,154	+				-0.8
2,019,162	-				-1.2
2,019,162	-				+0.3
2,019,194	-				+1.2
2,019,298	-		MIT1002_01812	0.14	+0.0
2,019,298	-		MIT1002_01812	0.14	+0.5
2,019,352	-		MIT1002_01812	0.17	+0.5
2,019,412	-		MIT1002_01812	0.20	-0.3
2,019,450	+		MIT1002_01812	0.22	+0.2
2,019,455	+		MIT1002_01812	0.22	-1.3
2,019,518	+		MIT1002_01812	0.25	-0.6
2,019,629	+		MIT1002_01812	0.31	+0.3
2,019,654	+		MIT1002_01812	0.32	-1.3
2,019,753	+		MIT1002_01812	0.37	-0.2
2,019,761	-		MIT1002_01812	0.38	-0.6
2,019,800	-		MIT1002_01812	0.40	-0.2
2,019,818	-		MIT1002_01812	0.41	-0.0
2,019,864	+		MIT1002_01812	0.43	+0.1
2,019,864	+		MIT1002_01812	0.43	-0.9
2,019,864	+		MIT1002_01812	0.43	+0.9
2,019,864	+		MIT1002_01812	0.43	-0.6
2,019,864	+		MIT1002_01812	0.43	-0.5
2,019,864	+		MIT1002_01812	0.43	-0.7
2,019,872	-		MIT1002_01812	0.43	+1.2
2,019,945	+		MIT1002_01812	0.47	-1.0
2,020,002	+		MIT1002_01812	0.50	-0.4
2,020,090	-		MIT1002_01812	0.54	-0.2
2,020,137	-		MIT1002_01812	0.57	-3.3
2,020,137	-		MIT1002_01812	0.57	+0.1
2,020,186	-		MIT1002_01812	0.59	-0.1
2,020,194	+		MIT1002_01812	0.60	-1.6
2,020,281	+		MIT1002_01812	0.64	-1.3
2,020,283	-		MIT1002_01812	0.64	-0.7
2,020,296	+		MIT1002_01812	0.65	+0.2
2,020,348	+		MIT1002_01812	0.67	+0.1
2,020,425	+		MIT1002_01812	0.71	+0.1
2,020,430	+		MIT1002_01812	0.71	-1.0
2,020,433	-		MIT1002_01812	0.72	-1.2
2,020,438	-		MIT1002_01812	0.72	-2.0
2,020,465	+		MIT1002_01812	0.73	+2.2
2,020,468	-		MIT1002_01812	0.73	-0.0
2,020,468	-		MIT1002_01812	0.73	-0.5
2,020,475	+		MIT1002_01812	0.74	+0.1
2,020,475	+		MIT1002_01812	0.74	-0.6
2,020,475	+		MIT1002_01812	0.74	+1.4
2,020,475	+		MIT1002_01812	0.74	+0.3
2,020,483	-		MIT1002_01812	0.74	-2.3
2,020,483	-		MIT1002_01812	0.74	-1.2
2,020,483	-		MIT1002_01812	0.74	-0.0
2,020,483	-		MIT1002_01812	0.74	+0.4
2,020,483	-		MIT1002_01812	0.74	+2.4
2,020,548	+		MIT1002_01812	0.77	-1.1
2,020,626	-		MIT1002_01812	0.81	+0.0
2,020,655	-		MIT1002_01812	0.83	-2.3
2,020,682	+		MIT1002_01812	0.84	-0.5
2,020,690	-		MIT1002_01812	0.85	-0.9
2,020,708	-		MIT1002_01812	0.86	+2.2
2,020,722	+		MIT1002_01812	0.86	-0.1
2,020,754	-		MIT1002_01812	0.88	-0.4
2,020,873	+				+0.4
2,020,873	+				+0.8
2,020,873	+				-0.2
2,020,881	-				-1.0
2,020,881	-				+0.2
2,020,881	-				-1.0
2,020,893	+				-0.0
2,020,901	-				+0.2
2,020,901	-				+0.3
2,020,919	+				-0.1
2,020,927	-				-2.5
2,020,937	+				+1.3
2,020,954	+				-0.8
2,020,973	-				-0.1
2,021,150	+		MIT1002_01813	0.16	+0.9
2,021,196	+		MIT1002_01813	0.26	-0.1
2,021,196	+		MIT1002_01813	0.26	+0.3
2,021,196	+		MIT1002_01813	0.26	-1.4
2,021,214	-		MIT1002_01813	0.30	+0.0
2,021,290	+		MIT1002_01813	0.46	-0.2
2,021,317	+		MIT1002_01813	0.52	+0.6
2,021,387	-		MIT1002_01813	0.67	-2.5
2,021,387	-		MIT1002_01813	0.67	-1.4
2,021,387	-		MIT1002_01813	0.67	-0.3
2,021,387	-		MIT1002_01813	0.67	+0.8
2,021,442	+		MIT1002_01813	0.79	-0.2
2,021,537	+				-1.8
2,021,712	+				+0.4
2,021,815	-				-0.4
2,021,849	+				-0.1
2,021,857	-				+0.6
2,021,857	-				+0.4
2,021,857	-				-0.7
2,021,897	+		MIT1002_01814	0.15	+0.4
2,021,944	-		MIT1002_01814	0.21	+0.9