Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment B, time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_01177 and MIT1002_01178 are separated by 8 nucleotides MIT1002_01178 and MIT1002_01179 are separated by 205 nucleotides
MIT1002_01177: MIT1002_01177 - hypothetical protein, at 1,292,077 to 1,292,805
_01177
MIT1002_01178: MIT1002_01178 - ribosomal-protein-alanine N-acetyltransferase, at 1,292,814 to 1,293,311
_01178
MIT1002_01179: MIT1002_01179 - putative amino-acid metabolite efflux pump, at 1,293,517 to 1,294,446
_01179
Position (kb)
1292
1293
1294 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1291.912 kb on + strand at 1291.912 kb on + strand at 1291.912 kb on + strand at 1291.920 kb on - strand at 1292.015 kb on + strand at 1292.058 kb on + strand at 1292.145 kb on + strand at 1292.145 kb on + strand at 1292.145 kb on + strand at 1292.145 kb on + strand at 1292.145 kb on + strand at 1292.153 kb on - strand, within MIT1002_01177 at 1292.153 kb on - strand, within MIT1002_01177 at 1292.153 kb on - strand, within MIT1002_01177 at 1292.200 kb on + strand, within MIT1002_01177 at 1292.247 kb on - strand, within MIT1002_01177 at 1292.320 kb on + strand, within MIT1002_01177 at 1292.361 kb on + strand, within MIT1002_01177 at 1292.369 kb on - strand, within MIT1002_01177 at 1292.375 kb on - strand, within MIT1002_01177 at 1292.431 kb on + strand, within MIT1002_01177 at 1292.471 kb on - strand, within MIT1002_01177 at 1292.534 kb on + strand, within MIT1002_01177 at 1292.594 kb on + strand, within MIT1002_01177 at 1292.604 kb on + strand, within MIT1002_01177 at 1292.625 kb on + strand, within MIT1002_01177 at 1292.626 kb on - strand, within MIT1002_01177 at 1292.646 kb on + strand, within MIT1002_01177 at 1292.674 kb on - strand, within MIT1002_01177 at 1292.721 kb on + strand, within MIT1002_01177 at 1292.777 kb on + strand at 1292.789 kb on - strand at 1292.842 kb on + strand at 1292.843 kb on - strand at 1292.855 kb on + strand at 1292.863 kb on - strand at 1292.870 kb on + strand, within MIT1002_01178 at 1292.915 kb on - strand, within MIT1002_01178 at 1293.030 kb on + strand, within MIT1002_01178 at 1293.056 kb on + strand, within MIT1002_01178 at 1293.064 kb on - strand, within MIT1002_01178 at 1293.065 kb on - strand, within MIT1002_01178 at 1293.065 kb on - strand, within MIT1002_01178 at 1293.124 kb on + strand, within MIT1002_01178 at 1293.124 kb on + strand, within MIT1002_01178 at 1293.124 kb on + strand, within MIT1002_01178 at 1293.290 kb on - strand at 1293.292 kb on + strand at 1293.299 kb on + strand at 1293.449 kb on + strand at 1293.457 kb on - strand at 1293.587 kb on + strand at 1293.595 kb on - strand at 1293.615 kb on - strand, within MIT1002_01179 at 1293.690 kb on + strand, within MIT1002_01179 at 1293.848 kb on + strand, within MIT1002_01179 at 1293.855 kb on + strand, within MIT1002_01179 at 1293.863 kb on - strand, within MIT1002_01179 at 1293.884 kb on + strand, within MIT1002_01179 at 1293.893 kb on - strand, within MIT1002_01179 at 1293.980 kb on - strand, within MIT1002_01179 at 1293.985 kb on - strand, within MIT1002_01179 at 1294.017 kb on - strand, within MIT1002_01179 at 1294.018 kb on - strand, within MIT1002_01179 at 1294.189 kb on + strand, within MIT1002_01179 at 1294.294 kb on + strand, within MIT1002_01179
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment B, time point 1 remove 1,291,912 + +0.0 1,291,912 + +0.5 1,291,912 + +0.0 1,291,920 - +0.1 1,292,015 + +0.4 1,292,058 + +1.2 1,292,145 + -0.1 1,292,145 + +0.1 1,292,145 + +0.2 1,292,145 + +1.8 1,292,145 + +0.3 1,292,153 - MIT1002_01177 0.10 +0.8 1,292,153 - MIT1002_01177 0.10 +1.1 1,292,153 - MIT1002_01177 0.10 +0.5 1,292,200 + MIT1002_01177 0.17 -0.2 1,292,247 - MIT1002_01177 0.23 +0.4 1,292,320 + MIT1002_01177 0.33 +0.8 1,292,361 + MIT1002_01177 0.39 -1.0 1,292,369 - MIT1002_01177 0.40 -1.8 1,292,375 - MIT1002_01177 0.41 +0.3 1,292,431 + MIT1002_01177 0.49 -1.7 1,292,471 - MIT1002_01177 0.54 -1.2 1,292,534 + MIT1002_01177 0.63 +0.6 1,292,594 + MIT1002_01177 0.71 +0.7 1,292,604 + MIT1002_01177 0.72 -0.8 1,292,625 + MIT1002_01177 0.75 -0.8 1,292,626 - MIT1002_01177 0.75 +0.5 1,292,646 + MIT1002_01177 0.78 +0.3 1,292,674 - MIT1002_01177 0.82 -0.1 1,292,721 + MIT1002_01177 0.88 +0.6 1,292,777 + +0.4 1,292,789 - -1.0 1,292,842 + -0.9 1,292,843 - -1.8 1,292,855 + +0.3 1,292,863 - +0.5 1,292,870 + MIT1002_01178 0.11 -0.0 1,292,915 - MIT1002_01178 0.20 -0.5 1,293,030 + MIT1002_01178 0.43 -0.7 1,293,056 + MIT1002_01178 0.49 +0.0 1,293,064 - MIT1002_01178 0.50 +1.8 1,293,065 - MIT1002_01178 0.50 -0.6 1,293,065 - MIT1002_01178 0.50 +0.7 1,293,124 + MIT1002_01178 0.62 -0.4 1,293,124 + MIT1002_01178 0.62 -0.1 1,293,124 + MIT1002_01178 0.62 -1.0 1,293,290 - +1.7 1,293,292 + -0.3 1,293,299 + +0.3 1,293,449 + -0.3 1,293,457 - +1.4 1,293,587 + -0.2 1,293,595 - +0.2 1,293,615 - MIT1002_01179 0.11 +0.6 1,293,690 + MIT1002_01179 0.19 +0.5 1,293,848 + MIT1002_01179 0.36 +0.7 1,293,855 + MIT1002_01179 0.36 +0.5 1,293,863 - MIT1002_01179 0.37 -1.3 1,293,884 + MIT1002_01179 0.39 +3.3 1,293,893 - MIT1002_01179 0.40 -0.5 1,293,980 - MIT1002_01179 0.50 -1.0 1,293,985 - MIT1002_01179 0.50 -1.6 1,294,017 - MIT1002_01179 0.54 +1.0 1,294,018 - MIT1002_01179 0.54 +0.2 1,294,189 + MIT1002_01179 0.72 +0.3 1,294,294 + MIT1002_01179 0.84 +1.7
Or see this region's nucleotide sequence