Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01011

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment B, time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_01010 and MIT1002_01011 overlap by 7 nucleotidesMIT1002_01011 and MIT1002_01012 are separated by 58 nucleotides MIT1002_01010: MIT1002_01010 - 1-deoxy-D-xylulose 5-phosphate reductoisomerase, at 1,116,471 to 1,117,658 _01010 MIT1002_01011: MIT1002_01011 - Regulator of sigma E protease, at 1,117,652 to 1,119,004 _01011 MIT1002_01012: MIT1002_01012 - Outer membrane protein assembly factor BamA precursor, at 1,119,063 to 1,121,540 _01012 Position (kb) 1117 1118 1119 1120Strain fitness (log2 ratio) -2 -1 0 1at 1117.823 kb on + strand, within MIT1002_01011at 1118.104 kb on + strand, within MIT1002_01011at 1118.122 kb on + strand, within MIT1002_01011at 1118.151 kb on + strand, within MIT1002_01011at 1118.273 kb on + strand, within MIT1002_01011at 1118.273 kb on + strand, within MIT1002_01011at 1118.273 kb on + strand, within MIT1002_01011at 1118.273 kb on + strand, within MIT1002_01011at 1118.273 kb on + strand, within MIT1002_01011at 1118.273 kb on + strand, within MIT1002_01011at 1118.283 kb on + strand, within MIT1002_01011at 1118.283 kb on + strand, within MIT1002_01011at 1118.283 kb on + strand, within MIT1002_01011at 1118.283 kb on + strand, within MIT1002_01011at 1118.283 kb on + strand, within MIT1002_01011at 1118.283 kb on + strand, within MIT1002_01011at 1118.283 kb on + strand, within MIT1002_01011at 1118.329 kb on + strand, within MIT1002_01011at 1118.613 kb on + strand, within MIT1002_01011at 1119.018 kb on + strandat 1119.018 kb on + strandat 1119.018 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment B, time point 1
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1,117,823 + MIT1002_01011 0.13 -0.0
1,118,104 + MIT1002_01011 0.33 -1.0
1,118,122 + MIT1002_01011 0.35 -0.4
1,118,151 + MIT1002_01011 0.37 -2.1
1,118,273 + MIT1002_01011 0.46 -1.0
1,118,273 + MIT1002_01011 0.46 +1.3
1,118,273 + MIT1002_01011 0.46 -2.6
1,118,273 + MIT1002_01011 0.46 +0.2
1,118,273 + MIT1002_01011 0.46 -0.7
1,118,273 + MIT1002_01011 0.46 -0.0
1,118,283 + MIT1002_01011 0.47 -1.0
1,118,283 + MIT1002_01011 0.47 +0.3
1,118,283 + MIT1002_01011 0.47 -0.8
1,118,283 + MIT1002_01011 0.47 -1.0
1,118,283 + MIT1002_01011 0.47 -2.7
1,118,283 + MIT1002_01011 0.47 -0.9
1,118,283 + MIT1002_01011 0.47 -0.4
1,118,329 + MIT1002_01011 0.50 +0.2
1,118,613 + MIT1002_01011 0.71 +1.7
1,119,018 + -0.9
1,119,018 + +0.7
1,119,018 + -0.2

Or see this region's nucleotide sequence