Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment B, time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00702 and MIT1002_00703 are separated by 145 nucleotides MIT1002_00703 and MIT1002_00704 overlap by 62 nucleotides MIT1002_00704 and MIT1002_00705 are separated by 33 nucleotides MIT1002_00705 and MIT1002_00706 are separated by 4 nucleotides
MIT1002_00702: MIT1002_00702 - Anthranilate phosphoribosyltransferase, at 769,833 to 770,819
_00702
MIT1002_00703: MIT1002_00703 - hypothetical protein, at 770,965 to 771,612
_00703
MIT1002_00704: MIT1002_00704 - hypothetical protein, at 771,551 to 771,889
_00704
MIT1002_00705: MIT1002_00705 - Trifunctional nucleotide phosphoesterase protein YfkN precursor, at 771,923 to 772,483
_00705
MIT1002_00706: MIT1002_00706 - Bacteriophytochrome cph2, at 772,488 to 774,086
_00706
Position (kb) 770
771
772 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 769.971 kb on + strand, within MIT1002_00702 at 770.002 kb on + strand, within MIT1002_00702 at 770.040 kb on - strand, within MIT1002_00702 at 770.057 kb on + strand, within MIT1002_00702 at 770.077 kb on + strand, within MIT1002_00702 at 770.212 kb on - strand, within MIT1002_00702 at 770.220 kb on + strand, within MIT1002_00702 at 770.220 kb on + strand, within MIT1002_00702 at 770.220 kb on + strand, within MIT1002_00702 at 770.222 kb on - strand, within MIT1002_00702 at 770.223 kb on - strand, within MIT1002_00702 at 770.238 kb on - strand, within MIT1002_00702 at 770.247 kb on - strand, within MIT1002_00702 at 770.254 kb on + strand, within MIT1002_00702 at 770.262 kb on - strand, within MIT1002_00702 at 770.262 kb on - strand, within MIT1002_00702 at 770.292 kb on - strand, within MIT1002_00702 at 770.366 kb on + strand, within MIT1002_00702 at 770.376 kb on + strand, within MIT1002_00702 at 770.384 kb on - strand, within MIT1002_00702 at 770.389 kb on - strand, within MIT1002_00702 at 770.396 kb on - strand, within MIT1002_00702 at 770.531 kb on + strand, within MIT1002_00702 at 770.598 kb on - strand, within MIT1002_00702 at 770.655 kb on + strand, within MIT1002_00702 at 770.694 kb on + strand, within MIT1002_00702 at 770.694 kb on + strand, within MIT1002_00702 at 770.703 kb on + strand, within MIT1002_00702 at 770.725 kb on + strand at 770.780 kb on + strand at 770.788 kb on - strand at 770.917 kb on - strand at 771.022 kb on + strand at 771.029 kb on - strand at 771.029 kb on - strand at 771.060 kb on - strand, within MIT1002_00703 at 771.079 kb on - strand, within MIT1002_00703 at 771.112 kb on + strand, within MIT1002_00703 at 771.141 kb on - strand, within MIT1002_00703 at 771.219 kb on + strand, within MIT1002_00703 at 771.222 kb on - strand, within MIT1002_00703 at 771.227 kb on - strand, within MIT1002_00703 at 771.264 kb on + strand, within MIT1002_00703 at 771.376 kb on - strand, within MIT1002_00703 at 771.583 kb on + strand at 771.583 kb on + strand at 771.588 kb on + strand at 771.596 kb on - strand at 771.596 kb on - strand at 771.670 kb on - strand, within MIT1002_00704 at 771.681 kb on - strand, within MIT1002_00704 at 771.708 kb on + strand, within MIT1002_00704 at 771.732 kb on - strand, within MIT1002_00704 at 771.803 kb on + strand, within MIT1002_00704 at 771.844 kb on + strand, within MIT1002_00704 at 771.844 kb on + strand, within MIT1002_00704 at 771.928 kb on - strand at 771.937 kb on + strand at 771.974 kb on - strand at 772.022 kb on - strand, within MIT1002_00705 at 772.116 kb on - strand, within MIT1002_00705 at 772.137 kb on - strand, within MIT1002_00705 at 772.195 kb on + strand, within MIT1002_00705 at 772.209 kb on - strand, within MIT1002_00705 at 772.209 kb on - strand, within MIT1002_00705 at 772.255 kb on + strand, within MIT1002_00705 at 772.340 kb on - strand, within MIT1002_00705 at 772.340 kb on - strand, within MIT1002_00705 at 772.367 kb on + strand, within MIT1002_00705 at 772.438 kb on + strand at 772.530 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment B, time point 1 remove 769,971 + MIT1002_00702 0.14 +0.7 770,002 + MIT1002_00702 0.17 +0.6 770,040 - MIT1002_00702 0.21 +1.0 770,057 + MIT1002_00702 0.23 -2.2 770,077 + MIT1002_00702 0.25 -2.2 770,212 - MIT1002_00702 0.38 +0.8 770,220 + MIT1002_00702 0.39 -0.3 770,220 + MIT1002_00702 0.39 -0.6 770,220 + MIT1002_00702 0.39 -1.1 770,222 - MIT1002_00702 0.39 -1.8 770,223 - MIT1002_00702 0.40 +1.6 770,238 - MIT1002_00702 0.41 +0.0 770,247 - MIT1002_00702 0.42 -1.4 770,254 + MIT1002_00702 0.43 +0.1 770,262 - MIT1002_00702 0.43 +1.1 770,262 - MIT1002_00702 0.43 -0.9 770,292 - MIT1002_00702 0.47 +0.4 770,366 + MIT1002_00702 0.54 -1.0 770,376 + MIT1002_00702 0.55 -0.2 770,384 - MIT1002_00702 0.56 +0.7 770,389 - MIT1002_00702 0.56 -0.5 770,396 - MIT1002_00702 0.57 +0.4 770,531 + MIT1002_00702 0.71 -0.5 770,598 - MIT1002_00702 0.78 -0.3 770,655 + MIT1002_00702 0.83 +0.1 770,694 + MIT1002_00702 0.87 +0.4 770,694 + MIT1002_00702 0.87 -0.4 770,703 + MIT1002_00702 0.88 -0.9 770,725 + -3.4 770,780 + +0.8 770,788 - +0.6 770,917 - -1.9 771,022 + +0.7 771,029 - -0.7 771,029 - +0.1 771,060 - MIT1002_00703 0.15 +0.3 771,079 - MIT1002_00703 0.18 -0.2 771,112 + MIT1002_00703 0.23 -0.6 771,141 - MIT1002_00703 0.27 -0.1 771,219 + MIT1002_00703 0.39 +0.0 771,222 - MIT1002_00703 0.40 -1.4 771,227 - MIT1002_00703 0.40 +0.3 771,264 + MIT1002_00703 0.46 -0.1 771,376 - MIT1002_00703 0.63 -1.2 771,583 + +0.4 771,583 + +0.3 771,588 + +0.3 771,596 - -0.9 771,596 - -2.1 771,670 - MIT1002_00704 0.35 -0.4 771,681 - MIT1002_00704 0.38 +1.2 771,708 + MIT1002_00704 0.46 -0.9 771,732 - MIT1002_00704 0.53 -0.6 771,803 + MIT1002_00704 0.74 +0.5 771,844 + MIT1002_00704 0.86 -0.5 771,844 + MIT1002_00704 0.86 -0.4 771,928 - +0.7 771,937 + -1.0 771,974 - -0.1 772,022 - MIT1002_00705 0.18 -0.0 772,116 - MIT1002_00705 0.34 -0.1 772,137 - MIT1002_00705 0.38 -0.4 772,195 + MIT1002_00705 0.48 -1.4 772,209 - MIT1002_00705 0.51 +1.0 772,209 - MIT1002_00705 0.51 -0.5 772,255 + MIT1002_00705 0.59 +0.2 772,340 - MIT1002_00705 0.74 -0.3 772,340 - MIT1002_00705 0.74 -0.2 772,367 + MIT1002_00705 0.79 +0.2 772,438 + -0.8 772,530 - -0.3
Or see this region's nucleotide sequence