Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00549

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment B, time point 1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMIT1002_00547 and MIT1002_00548 are separated by 48 nucleotidesMIT1002_00548 and MIT1002_00549 are separated by 344 nucleotidesMIT1002_00549 and MIT1002_00550 are separated by 19 nucleotides MIT1002_00547: MIT1002_00547 - Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily protein, at 596,667 to 597,053 _00547 MIT1002_00548: MIT1002_00548 - Rho-binding antiterminator, at 597,102 to 597,356 _00548 MIT1002_00549: MIT1002_00549 - Phosphate-selective porin, at 597,701 to 598,819 _00549 MIT1002_00550: MIT1002_00550 - lysine-arginine-ornithine-binding periplasmic protein, at 598,839 to 599,636 _00550 Position (kb) 597 598 599Strain fitness (log2 ratio) -2 -1 0 1 2 3at 596.725 kb on + strand, within MIT1002_00547at 596.733 kb on - strand, within MIT1002_00547at 596.735 kb on - strand, within MIT1002_00547at 596.775 kb on - strand, within MIT1002_00547at 596.790 kb on - strand, within MIT1002_00547at 596.909 kb on + strand, within MIT1002_00547at 596.916 kb on + strand, within MIT1002_00547at 596.917 kb on - strand, within MIT1002_00547at 596.973 kb on + strand, within MIT1002_00547at 596.981 kb on - strand, within MIT1002_00547at 596.981 kb on - strand, within MIT1002_00547at 597.001 kb on - strand, within MIT1002_00547at 597.006 kb on + strand, within MIT1002_00547at 597.091 kb on + strandat 597.109 kb on - strandat 597.206 kb on - strand, within MIT1002_00548at 597.210 kb on + strand, within MIT1002_00548at 597.219 kb on - strand, within MIT1002_00548at 597.246 kb on + strand, within MIT1002_00548at 597.254 kb on - strand, within MIT1002_00548at 597.296 kb on + strand, within MIT1002_00548at 597.304 kb on - strand, within MIT1002_00548at 597.305 kb on + strand, within MIT1002_00548at 597.313 kb on - strand, within MIT1002_00548at 597.351 kb on + strandat 597.370 kb on - strandat 597.382 kb on - strandat 597.389 kb on + strandat 597.402 kb on + strandat 597.402 kb on + strandat 597.449 kb on + strandat 597.543 kb on - strandat 597.543 kb on - strandat 597.610 kb on + strandat 597.641 kb on - strandat 597.805 kb on + strandat 597.849 kb on - strand, within MIT1002_00549at 597.941 kb on + strand, within MIT1002_00549at 597.951 kb on + strand, within MIT1002_00549at 598.014 kb on + strand, within MIT1002_00549at 598.014 kb on + strand, within MIT1002_00549at 598.022 kb on + strand, within MIT1002_00549at 598.369 kb on - strand, within MIT1002_00549at 598.372 kb on + strand, within MIT1002_00549at 598.397 kb on + strand, within MIT1002_00549at 598.455 kb on + strand, within MIT1002_00549at 598.457 kb on + strand, within MIT1002_00549at 598.465 kb on - strand, within MIT1002_00549at 598.492 kb on - strand, within MIT1002_00549at 598.492 kb on - strand, within MIT1002_00549at 598.492 kb on - strand, within MIT1002_00549at 598.497 kb on - strand, within MIT1002_00549at 598.555 kb on - strand, within MIT1002_00549at 598.604 kb on + strand, within MIT1002_00549at 598.604 kb on + strand, within MIT1002_00549at 598.604 kb on + strand, within MIT1002_00549at 598.604 kb on + strand, within MIT1002_00549at 598.604 kb on + strand, within MIT1002_00549at 598.606 kb on + strand, within MIT1002_00549at 598.612 kb on - strand, within MIT1002_00549at 598.612 kb on - strand, within MIT1002_00549at 598.612 kb on - strand, within MIT1002_00549at 598.623 kb on - strand, within MIT1002_00549at 598.656 kb on + strand, within MIT1002_00549at 598.712 kb on - strandat 598.740 kb on + strandat 598.748 kb on - strandat 598.862 kb on + strandat 598.899 kb on - strandat 598.934 kb on + strand, within MIT1002_00550at 598.940 kb on - strand, within MIT1002_00550at 598.940 kb on - strand, within MIT1002_00550at 598.972 kb on + strand, within MIT1002_00550at 598.985 kb on + strand, within MIT1002_00550at 598.993 kb on - strand, within MIT1002_00550at 599.021 kb on + strand, within MIT1002_00550at 599.054 kb on + strand, within MIT1002_00550at 599.066 kb on + strand, within MIT1002_00550at 599.149 kb on - strand, within MIT1002_00550at 599.149 kb on - strand, within MIT1002_00550at 599.149 kb on - strand, within MIT1002_00550at 599.203 kb on - strand, within MIT1002_00550at 599.242 kb on - strand, within MIT1002_00550at 599.301 kb on - strand, within MIT1002_00550at 599.382 kb on + strand, within MIT1002_00550at 599.382 kb on + strand, within MIT1002_00550at 599.390 kb on - strand, within MIT1002_00550at 599.435 kb on - strand, within MIT1002_00550at 599.530 kb on + strand, within MIT1002_00550at 599.538 kb on - strand, within MIT1002_00550at 599.538 kb on - strand, within MIT1002_00550at 599.551 kb on + strand, within MIT1002_00550at 599.754 kb on + strandat 599.754 kb on + strandat 599.758 kb on + strandat 599.766 kb on - strandat 599.798 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment B, time point 1
remove
596,725 + MIT1002_00547 0.15 -0.1
596,733 - MIT1002_00547 0.17 -0.3
596,735 - MIT1002_00547 0.18 +0.4
596,775 - MIT1002_00547 0.28 +0.2
596,790 - MIT1002_00547 0.32 +0.9
596,909 + MIT1002_00547 0.63 +1.2
596,916 + MIT1002_00547 0.64 +2.4
596,917 - MIT1002_00547 0.65 -0.3
596,973 + MIT1002_00547 0.79 +0.5
596,981 - MIT1002_00547 0.81 -0.1
596,981 - MIT1002_00547 0.81 +0.3
597,001 - MIT1002_00547 0.86 +0.4
597,006 + MIT1002_00547 0.88 -0.5
597,091 + -0.3
597,109 - -0.6
597,206 - MIT1002_00548 0.41 +0.1
597,210 + MIT1002_00548 0.42 -1.0
597,219 - MIT1002_00548 0.46 +2.1
597,246 + MIT1002_00548 0.56 +0.6
597,254 - MIT1002_00548 0.60 +0.0
597,296 + MIT1002_00548 0.76 -2.1
597,304 - MIT1002_00548 0.79 +2.0
597,305 + MIT1002_00548 0.80 +1.3
597,313 - MIT1002_00548 0.83 +0.3
597,351 + +0.6
597,370 - -0.4
597,382 - +1.9
597,389 + -0.6
597,402 + +0.2
597,402 + +0.9
597,449 + -0.4
597,543 - +0.0
597,543 - +0.9
597,610 + +0.4
597,641 - -0.1
597,805 + -0.4
597,849 - MIT1002_00549 0.13 +0.9
597,941 + MIT1002_00549 0.21 -1.4
597,951 + MIT1002_00549 0.22 +0.3
598,014 + MIT1002_00549 0.28 +3.1
598,014 + MIT1002_00549 0.28 +0.2
598,022 + MIT1002_00549 0.29 +1.3
598,369 - MIT1002_00549 0.60 -0.5
598,372 + MIT1002_00549 0.60 -0.1
598,397 + MIT1002_00549 0.62 -0.9
598,455 + MIT1002_00549 0.67 -0.6
598,457 + MIT1002_00549 0.68 -0.1
598,465 - MIT1002_00549 0.68 +1.3
598,492 - MIT1002_00549 0.71 -0.1
598,492 - MIT1002_00549 0.71 +0.6
598,492 - MIT1002_00549 0.71 +0.3
598,497 - MIT1002_00549 0.71 -0.2
598,555 - MIT1002_00549 0.76 +0.3
598,604 + MIT1002_00549 0.81 -0.8
598,604 + MIT1002_00549 0.81 -1.1
598,604 + MIT1002_00549 0.81 +1.0
598,604 + MIT1002_00549 0.81 -0.3
598,604 + MIT1002_00549 0.81 -0.1
598,606 + MIT1002_00549 0.81 -0.4
598,612 - MIT1002_00549 0.81 -0.0
598,612 - MIT1002_00549 0.81 +2.0
598,612 - MIT1002_00549 0.81 +1.0
598,623 - MIT1002_00549 0.82 +1.1
598,656 + MIT1002_00549 0.85 +0.1
598,712 - -0.3
598,740 + -0.6
598,748 - +0.3
598,862 + +0.5
598,899 - +0.1
598,934 + MIT1002_00550 0.12 +0.4
598,940 - MIT1002_00550 0.13 -0.0
598,940 - MIT1002_00550 0.13 -0.2
598,972 + MIT1002_00550 0.17 -1.1
598,985 + MIT1002_00550 0.18 -0.1
598,993 - MIT1002_00550 0.19 -0.6
599,021 + MIT1002_00550 0.23 -0.2
599,054 + MIT1002_00550 0.27 -0.2
599,066 + MIT1002_00550 0.28 -0.9
599,149 - MIT1002_00550 0.39 +0.4
599,149 - MIT1002_00550 0.39 +0.4
599,149 - MIT1002_00550 0.39 -0.4
599,203 - MIT1002_00550 0.46 -2.1
599,242 - MIT1002_00550 0.51 -0.8
599,301 - MIT1002_00550 0.58 +0.8
599,382 + MIT1002_00550 0.68 +1.0
599,382 + MIT1002_00550 0.68 +0.0
599,390 - MIT1002_00550 0.69 -0.1
599,435 - MIT1002_00550 0.75 +0.0
599,530 + MIT1002_00550 0.87 -0.5
599,538 - MIT1002_00550 0.88 -0.7
599,538 - MIT1002_00550 0.88 -0.5
599,551 + MIT1002_00550 0.89 -0.6
599,754 + +0.9
599,754 + +3.3
599,758 + +0.5
599,766 - +0.5
599,798 + -0.1

Or see this region's nucleotide sequence