Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00473

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment B, time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00472 and MIT1002_00473 are separated by 53 nucleotidesMIT1002_00473 and MIT1002_00474 are separated by 161 nucleotidesMIT1002_00474 and MIT1002_00475 are separated by 5 nucleotides MIT1002_00472: MIT1002_00472 - Methylglyoxal synthase, at 516,561 to 516,971 _00472 MIT1002_00473: MIT1002_00473 - hypothetical protein, at 517,025 to 517,981 _00473 MIT1002_00474: MIT1002_00474 - flagellar basal body L-ring protein, at 518,143 to 518,892 _00474 MIT1002_00475: MIT1002_00475 - hypothetical protein, at 518,898 to 520,151 _00475 Position (kb) 517 518Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 516.087 kb on + strandat 516.092 kb on + strandat 516.095 kb on - strandat 516.112 kb on + strandat 516.117 kb on + strandat 516.124 kb on + strandat 516.356 kb on + strandat 516.436 kb on - strandat 516.436 kb on - strandat 516.473 kb on + strandat 516.475 kb on + strandat 516.481 kb on - strandat 516.481 kb on - strandat 516.481 kb on - strandat 516.483 kb on - strandat 516.501 kb on - strandat 516.519 kb on - strandat 516.541 kb on + strandat 516.593 kb on - strandat 516.622 kb on + strand, within MIT1002_00472at 516.622 kb on + strand, within MIT1002_00472at 516.622 kb on + strand, within MIT1002_00472at 516.632 kb on + strand, within MIT1002_00472at 516.632 kb on + strand, within MIT1002_00472at 516.634 kb on + strand, within MIT1002_00472at 516.634 kb on + strand, within MIT1002_00472at 516.653 kb on + strand, within MIT1002_00472at 516.661 kb on - strand, within MIT1002_00472at 516.661 kb on - strand, within MIT1002_00472at 516.661 kb on - strand, within MIT1002_00472at 516.671 kb on + strand, within MIT1002_00472at 516.685 kb on + strand, within MIT1002_00472at 516.706 kb on + strand, within MIT1002_00472at 516.745 kb on - strand, within MIT1002_00472at 516.760 kb on - strand, within MIT1002_00472at 516.812 kb on + strand, within MIT1002_00472at 516.817 kb on + strand, within MIT1002_00472at 516.832 kb on + strand, within MIT1002_00472at 516.832 kb on + strand, within MIT1002_00472at 516.839 kb on + strand, within MIT1002_00472at 516.840 kb on - strand, within MIT1002_00472at 516.857 kb on + strand, within MIT1002_00472at 516.868 kb on - strand, within MIT1002_00472at 516.871 kb on + strand, within MIT1002_00472at 516.872 kb on + strand, within MIT1002_00472at 516.872 kb on + strand, within MIT1002_00472at 516.896 kb on + strand, within MIT1002_00472at 516.896 kb on + strand, within MIT1002_00472at 516.896 kb on + strand, within MIT1002_00472at 517.018 kb on - strandat 517.057 kb on - strandat 517.105 kb on + strandat 517.146 kb on + strand, within MIT1002_00473at 517.146 kb on + strand, within MIT1002_00473at 517.153 kb on + strand, within MIT1002_00473at 517.153 kb on + strand, within MIT1002_00473at 517.154 kb on - strand, within MIT1002_00473at 517.154 kb on - strand, within MIT1002_00473at 517.187 kb on + strand, within MIT1002_00473at 517.203 kb on + strand, within MIT1002_00473at 517.208 kb on + strand, within MIT1002_00473at 517.211 kb on - strand, within MIT1002_00473at 517.211 kb on - strand, within MIT1002_00473at 517.211 kb on - strand, within MIT1002_00473at 517.234 kb on - strand, within MIT1002_00473at 517.241 kb on + strand, within MIT1002_00473at 517.249 kb on - strand, within MIT1002_00473at 517.249 kb on - strand, within MIT1002_00473at 517.411 kb on + strand, within MIT1002_00473at 517.429 kb on + strand, within MIT1002_00473at 517.477 kb on + strand, within MIT1002_00473at 517.477 kb on + strand, within MIT1002_00473at 517.605 kb on + strand, within MIT1002_00473at 517.605 kb on + strand, within MIT1002_00473at 517.605 kb on + strand, within MIT1002_00473at 517.613 kb on - strand, within MIT1002_00473at 517.627 kb on - strand, within MIT1002_00473at 517.694 kb on + strand, within MIT1002_00473at 517.718 kb on + strand, within MIT1002_00473at 517.806 kb on + strand, within MIT1002_00473at 517.976 kb on + strandat 517.984 kb on - strandat 517.984 kb on - strandat 517.988 kb on + strandat 518.166 kb on - strandat 518.188 kb on - strandat 518.201 kb on + strandat 518.217 kb on - strandat 518.230 kb on + strand, within MIT1002_00474at 518.230 kb on + strand, within MIT1002_00474at 518.249 kb on + strand, within MIT1002_00474at 518.257 kb on - strand, within MIT1002_00474at 518.313 kb on - strand, within MIT1002_00474at 518.323 kb on - strand, within MIT1002_00474at 518.328 kb on + strand, within MIT1002_00474at 518.339 kb on + strand, within MIT1002_00474at 518.347 kb on - strand, within MIT1002_00474at 518.347 kb on - strand, within MIT1002_00474at 518.347 kb on - strand, within MIT1002_00474at 518.347 kb on - strand, within MIT1002_00474at 518.347 kb on - strand, within MIT1002_00474at 518.370 kb on + strand, within MIT1002_00474at 518.375 kb on + strand, within MIT1002_00474at 518.378 kb on - strand, within MIT1002_00474at 518.378 kb on - strand, within MIT1002_00474at 518.387 kb on + strand, within MIT1002_00474at 518.387 kb on + strand, within MIT1002_00474at 518.387 kb on + strand, within MIT1002_00474at 518.390 kb on - strand, within MIT1002_00474at 518.395 kb on - strand, within MIT1002_00474at 518.395 kb on - strand, within MIT1002_00474at 518.395 kb on - strand, within MIT1002_00474at 518.395 kb on - strand, within MIT1002_00474at 518.525 kb on + strand, within MIT1002_00474at 518.525 kb on + strand, within MIT1002_00474at 518.562 kb on + strand, within MIT1002_00474at 518.598 kb on - strand, within MIT1002_00474at 518.707 kb on + strand, within MIT1002_00474at 518.797 kb on - strand, within MIT1002_00474at 518.817 kb on + strand, within MIT1002_00474at 518.845 kb on + strandat 518.932 kb on + strandat 518.941 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment B, time point 1
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516,087 + -1.2
516,092 + -1.6
516,095 - -1.6
516,112 + -0.1
516,117 + -1.8
516,124 + -0.8
516,356 + -0.1
516,436 - -0.0
516,436 - -1.2
516,473 + -0.0
516,475 + +0.4
516,481 - +0.0
516,481 - +0.2
516,481 - -0.1
516,483 - -0.1
516,501 - -0.0
516,519 - +0.3
516,541 + +0.7
516,593 - -1.0
516,622 + MIT1002_00472 0.15 +0.2
516,622 + MIT1002_00472 0.15 +1.3
516,622 + MIT1002_00472 0.15 +1.1
516,632 + MIT1002_00472 0.17 -0.5
516,632 + MIT1002_00472 0.17 -0.7
516,634 + MIT1002_00472 0.18 +0.2
516,634 + MIT1002_00472 0.18 +0.0
516,653 + MIT1002_00472 0.22 +1.1
516,661 - MIT1002_00472 0.24 -1.7
516,661 - MIT1002_00472 0.24 +0.3
516,661 - MIT1002_00472 0.24 +2.2
516,671 + MIT1002_00472 0.27 -0.5
516,685 + MIT1002_00472 0.30 -0.4
516,706 + MIT1002_00472 0.35 +0.4
516,745 - MIT1002_00472 0.45 +0.3
516,760 - MIT1002_00472 0.48 +0.2
516,812 + MIT1002_00472 0.61 +0.0
516,817 + MIT1002_00472 0.62 -0.8
516,832 + MIT1002_00472 0.66 +0.3
516,832 + MIT1002_00472 0.66 +0.2
516,839 + MIT1002_00472 0.68 +0.1
516,840 - MIT1002_00472 0.68 -0.4
516,857 + MIT1002_00472 0.72 +1.2
516,868 - MIT1002_00472 0.75 -0.4
516,871 + MIT1002_00472 0.75 +0.1
516,872 + MIT1002_00472 0.76 -0.4
516,872 + MIT1002_00472 0.76 -0.7
516,896 + MIT1002_00472 0.82 +0.6
516,896 + MIT1002_00472 0.82 -2.9
516,896 + MIT1002_00472 0.82 +0.4
517,018 - -0.7
517,057 - +0.1
517,105 + -0.1
517,146 + MIT1002_00473 0.13 -1.2
517,146 + MIT1002_00473 0.13 +0.5
517,153 + MIT1002_00473 0.13 +0.2
517,153 + MIT1002_00473 0.13 +0.0
517,154 - MIT1002_00473 0.13 -0.5
517,154 - MIT1002_00473 0.13 -0.3
517,187 + MIT1002_00473 0.17 -0.1
517,203 + MIT1002_00473 0.19 -0.2
517,208 + MIT1002_00473 0.19 +0.4
517,211 - MIT1002_00473 0.19 -1.1
517,211 - MIT1002_00473 0.19 +0.5
517,211 - MIT1002_00473 0.19 +0.3
517,234 - MIT1002_00473 0.22 -0.5
517,241 + MIT1002_00473 0.23 -0.2
517,249 - MIT1002_00473 0.23 -0.9
517,249 - MIT1002_00473 0.23 -3.1
517,411 + MIT1002_00473 0.40 -0.5
517,429 + MIT1002_00473 0.42 -1.1
517,477 + MIT1002_00473 0.47 -0.1
517,477 + MIT1002_00473 0.47 -0.1
517,605 + MIT1002_00473 0.61 -0.2
517,605 + MIT1002_00473 0.61 -0.4
517,605 + MIT1002_00473 0.61 +0.1
517,613 - MIT1002_00473 0.61 -0.9
517,627 - MIT1002_00473 0.63 -0.3
517,694 + MIT1002_00473 0.70 -1.7
517,718 + MIT1002_00473 0.72 +0.2
517,806 + MIT1002_00473 0.82 -0.8
517,976 + -1.7
517,984 - -0.0
517,984 - -0.4
517,988 + +0.0
518,166 - +0.7
518,188 - -0.4
518,201 + +0.7
518,217 - +0.6
518,230 + MIT1002_00474 0.12 -1.0
518,230 + MIT1002_00474 0.12 +0.2
518,249 + MIT1002_00474 0.14 -1.2
518,257 - MIT1002_00474 0.15 -1.2
518,313 - MIT1002_00474 0.23 -3.6
518,323 - MIT1002_00474 0.24 -0.3
518,328 + MIT1002_00474 0.25 -0.5
518,339 + MIT1002_00474 0.26 +0.7
518,347 - MIT1002_00474 0.27 -0.0
518,347 - MIT1002_00474 0.27 +1.9
518,347 - MIT1002_00474 0.27 +0.3
518,347 - MIT1002_00474 0.27 -0.2
518,347 - MIT1002_00474 0.27 +0.0
518,370 + MIT1002_00474 0.30 +0.3
518,375 + MIT1002_00474 0.31 -0.8
518,378 - MIT1002_00474 0.31 +1.1
518,378 - MIT1002_00474 0.31 +1.7
518,387 + MIT1002_00474 0.33 +0.2
518,387 + MIT1002_00474 0.33 +0.0
518,387 + MIT1002_00474 0.33 -0.6
518,390 - MIT1002_00474 0.33 -0.1
518,395 - MIT1002_00474 0.34 +0.0
518,395 - MIT1002_00474 0.34 -0.5
518,395 - MIT1002_00474 0.34 +1.0
518,395 - MIT1002_00474 0.34 -0.8
518,525 + MIT1002_00474 0.51 -0.3
518,525 + MIT1002_00474 0.51 -2.6
518,562 + MIT1002_00474 0.56 -1.7
518,598 - MIT1002_00474 0.61 -0.9
518,707 + MIT1002_00474 0.75 +1.1
518,797 - MIT1002_00474 0.87 +0.4
518,817 + MIT1002_00474 0.90 -0.0
518,845 + -0.9
518,932 + -0.2
518,941 - -2.4

Or see this region's nucleotide sequence