Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00413

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment B, time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00412 and MIT1002_00413 are separated by 212 nucleotidesMIT1002_00413 and MIT1002_00414 are separated by 228 nucleotidesMIT1002_00414 and MIT1002_00415 are separated by 49 nucleotides MIT1002_00412: MIT1002_00412 - Inner membrane protein YedI, at 444,225 to 445,148 _00412 MIT1002_00413: MIT1002_00413 - Extracellular ribonuclease precursor, at 445,361 to 447,001 _00413 MIT1002_00414: MIT1002_00414 - Bacillibactin transport regulator, at 447,230 to 447,949 _00414 MIT1002_00415: MIT1002_00415 - hypothetical protein, at 447,999 to 448,853 _00415 Position (kb) 445 446 447 448Strain fitness (log2 ratio) -2 -1 0 1 2at 444.401 kb on + strand, within MIT1002_00412at 444.440 kb on - strand, within MIT1002_00412at 444.456 kb on - strand, within MIT1002_00412at 444.480 kb on - strand, within MIT1002_00412at 444.482 kb on - strand, within MIT1002_00412at 444.510 kb on + strand, within MIT1002_00412at 444.528 kb on - strand, within MIT1002_00412at 444.545 kb on + strand, within MIT1002_00412at 444.553 kb on - strand, within MIT1002_00412at 444.553 kb on - strand, within MIT1002_00412at 444.553 kb on - strand, within MIT1002_00412at 444.590 kb on + strand, within MIT1002_00412at 444.604 kb on - strand, within MIT1002_00412at 444.604 kb on - strand, within MIT1002_00412at 444.614 kb on + strand, within MIT1002_00412at 444.649 kb on + strand, within MIT1002_00412at 444.695 kb on + strand, within MIT1002_00412at 444.702 kb on - strand, within MIT1002_00412at 444.704 kb on - strand, within MIT1002_00412at 444.750 kb on + strand, within MIT1002_00412at 444.781 kb on - strand, within MIT1002_00412at 444.781 kb on - strand, within MIT1002_00412at 444.865 kb on - strand, within MIT1002_00412at 444.938 kb on - strand, within MIT1002_00412at 444.997 kb on + strand, within MIT1002_00412at 445.006 kb on + strand, within MIT1002_00412at 445.006 kb on + strand, within MIT1002_00412at 445.006 kb on + strand, within MIT1002_00412at 445.006 kb on + strand, within MIT1002_00412at 445.006 kb on + strand, within MIT1002_00412at 445.013 kb on - strand, within MIT1002_00412at 445.014 kb on - strand, within MIT1002_00412at 445.014 kb on - strand, within MIT1002_00412at 445.014 kb on - strand, within MIT1002_00412at 445.014 kb on - strand, within MIT1002_00412at 445.019 kb on - strand, within MIT1002_00412at 445.021 kb on + strand, within MIT1002_00412at 445.024 kb on - strand, within MIT1002_00412at 445.168 kb on + strandat 445.176 kb on - strandat 445.188 kb on - strandat 445.283 kb on + strandat 445.338 kb on + strandat 445.338 kb on + strandat 445.346 kb on + strandat 445.354 kb on - strandat 445.387 kb on + strandat 445.408 kb on + strandat 445.470 kb on - strandat 445.520 kb on + strandat 445.538 kb on + strand, within MIT1002_00413at 445.538 kb on + strand, within MIT1002_00413at 445.538 kb on + strand, within MIT1002_00413at 445.546 kb on - strand, within MIT1002_00413at 445.546 kb on - strand, within MIT1002_00413at 445.546 kb on - strand, within MIT1002_00413at 445.635 kb on + strand, within MIT1002_00413at 445.643 kb on - strand, within MIT1002_00413at 445.643 kb on - strand, within MIT1002_00413at 445.702 kb on + strand, within MIT1002_00413at 445.740 kb on + strand, within MIT1002_00413at 445.744 kb on + strand, within MIT1002_00413at 445.778 kb on - strand, within MIT1002_00413at 445.807 kb on + strand, within MIT1002_00413at 445.812 kb on + strand, within MIT1002_00413at 445.885 kb on + strand, within MIT1002_00413at 445.906 kb on + strand, within MIT1002_00413at 445.906 kb on + strand, within MIT1002_00413at 445.906 kb on + strand, within MIT1002_00413at 445.906 kb on + strand, within MIT1002_00413at 445.906 kb on + strand, within MIT1002_00413at 445.906 kb on + strand, within MIT1002_00413at 445.906 kb on + strand, within MIT1002_00413at 445.914 kb on - strand, within MIT1002_00413at 445.914 kb on - strand, within MIT1002_00413at 445.914 kb on - strand, within MIT1002_00413at 445.914 kb on - strand, within MIT1002_00413at 445.914 kb on - strand, within MIT1002_00413at 445.914 kb on - strand, within MIT1002_00413at 445.914 kb on - strand, within MIT1002_00413at 445.914 kb on - strand, within MIT1002_00413at 445.914 kb on - strand, within MIT1002_00413at 445.914 kb on - strand, within MIT1002_00413at 445.914 kb on - strand, within MIT1002_00413at 445.914 kb on - strand, within MIT1002_00413at 445.920 kb on + strand, within MIT1002_00413at 445.925 kb on + strand, within MIT1002_00413at 445.941 kb on - strand, within MIT1002_00413at 446.022 kb on + strand, within MIT1002_00413at 446.030 kb on - strand, within MIT1002_00413at 446.093 kb on + strand, within MIT1002_00413at 446.101 kb on - strand, within MIT1002_00413at 446.102 kb on + strand, within MIT1002_00413at 446.105 kb on - strand, within MIT1002_00413at 446.110 kb on + strand, within MIT1002_00413at 446.120 kb on - strand, within MIT1002_00413at 446.150 kb on - strand, within MIT1002_00413at 446.180 kb on - strand, within MIT1002_00413at 446.181 kb on - strand, within MIT1002_00413at 446.181 kb on - strand, within MIT1002_00413at 446.233 kb on + strand, within MIT1002_00413at 446.306 kb on + strand, within MIT1002_00413at 446.325 kb on + strand, within MIT1002_00413at 446.340 kb on + strand, within MIT1002_00413at 446.383 kb on - strand, within MIT1002_00413at 446.515 kb on + strand, within MIT1002_00413at 446.532 kb on - strand, within MIT1002_00413at 446.546 kb on - strand, within MIT1002_00413at 446.556 kb on - strand, within MIT1002_00413at 446.573 kb on + strand, within MIT1002_00413at 446.573 kb on + strand, within MIT1002_00413at 446.581 kb on - strand, within MIT1002_00413at 446.581 kb on - strand, within MIT1002_00413at 446.658 kb on + strand, within MIT1002_00413at 446.703 kb on + strand, within MIT1002_00413at 446.713 kb on + strand, within MIT1002_00413at 446.713 kb on + strand, within MIT1002_00413at 446.713 kb on + strand, within MIT1002_00413at 446.721 kb on - strand, within MIT1002_00413at 446.721 kb on - strand, within MIT1002_00413at 446.721 kb on - strand, within MIT1002_00413at 446.793 kb on + strand, within MIT1002_00413at 446.830 kb on + strand, within MIT1002_00413at 446.878 kb on - strandat 446.928 kb on - strandat 446.930 kb on + strandat 446.930 kb on - strandat 446.938 kb on - strandat 446.938 kb on - strandat 446.957 kb on + strandat 447.056 kb on + strandat 447.064 kb on - strandat 447.137 kb on + strandat 447.145 kb on - strandat 447.191 kb on + strandat 447.213 kb on + strandat 447.248 kb on - strandat 447.265 kb on + strandat 447.265 kb on + strandat 447.267 kb on + strandat 447.304 kb on + strand, within MIT1002_00414at 447.312 kb on - strand, within MIT1002_00414at 447.317 kb on - strand, within MIT1002_00414at 447.385 kb on + strand, within MIT1002_00414at 447.391 kb on - strand, within MIT1002_00414at 447.393 kb on - strand, within MIT1002_00414at 447.510 kb on + strand, within MIT1002_00414at 447.518 kb on - strand, within MIT1002_00414at 447.518 kb on - strand, within MIT1002_00414at 447.574 kb on - strand, within MIT1002_00414at 447.574 kb on - strand, within MIT1002_00414at 447.664 kb on - strand, within MIT1002_00414at 447.671 kb on - strand, within MIT1002_00414at 447.690 kb on + strand, within MIT1002_00414at 447.690 kb on + strand, within MIT1002_00414at 447.690 kb on + strand, within MIT1002_00414at 447.690 kb on + strand, within MIT1002_00414at 447.698 kb on - strand, within MIT1002_00414at 447.698 kb on - strand, within MIT1002_00414at 447.698 kb on - strand, within MIT1002_00414at 447.700 kb on + strand, within MIT1002_00414at 447.708 kb on - strand, within MIT1002_00414at 447.724 kb on + strand, within MIT1002_00414at 447.739 kb on + strand, within MIT1002_00414at 447.789 kb on - strand, within MIT1002_00414at 447.811 kb on + strand, within MIT1002_00414at 447.811 kb on + strand, within MIT1002_00414at 447.850 kb on + strand, within MIT1002_00414at 447.855 kb on - strand, within MIT1002_00414at 447.860 kb on - strand, within MIT1002_00414at 447.860 kb on - strand, within MIT1002_00414at 447.860 kb on - strand, within MIT1002_00414at 447.932 kb on - strandat 447.932 kb on - strandat 447.967 kb on - strandat 447.973 kb on - strandat 447.974 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment B, time point 1
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444,401 + MIT1002_00412 0.19 +0.9
444,440 - MIT1002_00412 0.23 -1.4
444,456 - MIT1002_00412 0.25 +0.1
444,480 - MIT1002_00412 0.28 -0.3
444,482 - MIT1002_00412 0.28 +0.7
444,510 + MIT1002_00412 0.31 +0.9
444,528 - MIT1002_00412 0.33 +1.2
444,545 + MIT1002_00412 0.35 +0.1
444,553 - MIT1002_00412 0.35 -1.0
444,553 - MIT1002_00412 0.35 -0.2
444,553 - MIT1002_00412 0.35 +0.4
444,590 + MIT1002_00412 0.40 -1.7
444,604 - MIT1002_00412 0.41 -0.4
444,604 - MIT1002_00412 0.41 -1.0
444,614 + MIT1002_00412 0.42 -0.2
444,649 + MIT1002_00412 0.46 +1.3
444,695 + MIT1002_00412 0.51 +0.7
444,702 - MIT1002_00412 0.52 +0.9
444,704 - MIT1002_00412 0.52 -2.1
444,750 + MIT1002_00412 0.57 -0.1
444,781 - MIT1002_00412 0.60 -1.1
444,781 - MIT1002_00412 0.60 -0.0
444,865 - MIT1002_00412 0.69 +1.2
444,938 - MIT1002_00412 0.77 +0.6
444,997 + MIT1002_00412 0.84 -1.3
445,006 + MIT1002_00412 0.85 +0.4
445,006 + MIT1002_00412 0.85 -1.5
445,006 + MIT1002_00412 0.85 -0.5
445,006 + MIT1002_00412 0.85 -0.5
445,006 + MIT1002_00412 0.85 -0.1
445,013 - MIT1002_00412 0.85 +0.1
445,014 - MIT1002_00412 0.85 -0.6
445,014 - MIT1002_00412 0.85 +0.0
445,014 - MIT1002_00412 0.85 +1.7
445,014 - MIT1002_00412 0.85 +0.3
445,019 - MIT1002_00412 0.86 -0.0
445,021 + MIT1002_00412 0.86 -2.7
445,024 - MIT1002_00412 0.86 +0.7
445,168 + -0.4
445,176 - -0.6
445,188 - +0.6
445,283 + -0.3
445,338 + -0.5
445,338 + +0.7
445,346 + -0.4
445,354 - +1.6
445,387 + -1.0
445,408 + -0.3
445,470 - -0.1
445,520 + +0.8
445,538 + MIT1002_00413 0.11 -0.3
445,538 + MIT1002_00413 0.11 +0.9
445,538 + MIT1002_00413 0.11 +0.3
445,546 - MIT1002_00413 0.11 +0.1
445,546 - MIT1002_00413 0.11 -1.1
445,546 - MIT1002_00413 0.11 -1.4
445,635 + MIT1002_00413 0.17 -2.5
445,643 - MIT1002_00413 0.17 +0.5
445,643 - MIT1002_00413 0.17 +0.7
445,702 + MIT1002_00413 0.21 +0.5
445,740 + MIT1002_00413 0.23 +0.6
445,744 + MIT1002_00413 0.23 -0.4
445,778 - MIT1002_00413 0.25 -0.4
445,807 + MIT1002_00413 0.27 -0.8
445,812 + MIT1002_00413 0.27 -0.3
445,885 + MIT1002_00413 0.32 -2.3
445,906 + MIT1002_00413 0.33 +0.4
445,906 + MIT1002_00413 0.33 -0.1
445,906 + MIT1002_00413 0.33 +0.4
445,906 + MIT1002_00413 0.33 -0.7
445,906 + MIT1002_00413 0.33 +0.4
445,906 + MIT1002_00413 0.33 +0.4
445,906 + MIT1002_00413 0.33 +0.1
445,914 - MIT1002_00413 0.34 -0.1
445,914 - MIT1002_00413 0.34 +0.7
445,914 - MIT1002_00413 0.34 -1.8
445,914 - MIT1002_00413 0.34 +0.5
445,914 - MIT1002_00413 0.34 +0.9
445,914 - MIT1002_00413 0.34 -1.7
445,914 - MIT1002_00413 0.34 +0.4
445,914 - MIT1002_00413 0.34 -0.3
445,914 - MIT1002_00413 0.34 -0.1
445,914 - MIT1002_00413 0.34 +0.5
445,914 - MIT1002_00413 0.34 -0.4
445,914 - MIT1002_00413 0.34 -0.1
445,920 + MIT1002_00413 0.34 +0.0
445,925 + MIT1002_00413 0.34 +0.6
445,941 - MIT1002_00413 0.35 -1.0
446,022 + MIT1002_00413 0.40 -0.4
446,030 - MIT1002_00413 0.41 +0.2
446,093 + MIT1002_00413 0.45 +0.0
446,101 - MIT1002_00413 0.45 +0.6
446,102 + MIT1002_00413 0.45 +0.2
446,105 - MIT1002_00413 0.45 -0.1
446,110 + MIT1002_00413 0.46 -0.5
446,120 - MIT1002_00413 0.46 -0.5
446,150 - MIT1002_00413 0.48 -2.6
446,180 - MIT1002_00413 0.50 -1.2
446,181 - MIT1002_00413 0.50 -0.6
446,181 - MIT1002_00413 0.50 +0.4
446,233 + MIT1002_00413 0.53 -1.1
446,306 + MIT1002_00413 0.58 -1.0
446,325 + MIT1002_00413 0.59 -1.6
446,340 + MIT1002_00413 0.60 +0.2
446,383 - MIT1002_00413 0.62 +0.0
446,515 + MIT1002_00413 0.70 +1.0
446,532 - MIT1002_00413 0.71 -0.1
446,546 - MIT1002_00413 0.72 +2.0
446,556 - MIT1002_00413 0.73 +0.4
446,573 + MIT1002_00413 0.74 -0.5
446,573 + MIT1002_00413 0.74 +0.7
446,581 - MIT1002_00413 0.74 -1.4
446,581 - MIT1002_00413 0.74 -0.3
446,658 + MIT1002_00413 0.79 +0.0
446,703 + MIT1002_00413 0.82 +0.1
446,713 + MIT1002_00413 0.82 +0.5
446,713 + MIT1002_00413 0.82 -0.7
446,713 + MIT1002_00413 0.82 -2.1
446,721 - MIT1002_00413 0.83 +0.4
446,721 - MIT1002_00413 0.83 -0.6
446,721 - MIT1002_00413 0.83 -0.2
446,793 + MIT1002_00413 0.87 +1.9
446,830 + MIT1002_00413 0.90 -0.2
446,878 - -1.2
446,928 - +0.4
446,930 + -0.0
446,930 - +0.1
446,938 - +0.9
446,938 - +0.3
446,957 + +0.4
447,056 + +0.3
447,064 - -1.0
447,137 + -2.6
447,145 - +1.5
447,191 + +0.6
447,213 + +0.7
447,248 - +0.9
447,265 + -0.1
447,265 + -0.0
447,267 + +0.4
447,304 + MIT1002_00414 0.10 -1.0
447,312 - MIT1002_00414 0.11 -0.5
447,317 - MIT1002_00414 0.12 +1.0
447,385 + MIT1002_00414 0.22 -0.0
447,391 - MIT1002_00414 0.22 -0.7
447,393 - MIT1002_00414 0.23 -1.1
447,510 + MIT1002_00414 0.39 +0.6
447,518 - MIT1002_00414 0.40 +1.3
447,518 - MIT1002_00414 0.40 -0.3
447,574 - MIT1002_00414 0.48 +0.4
447,574 - MIT1002_00414 0.48 +2.4
447,664 - MIT1002_00414 0.60 -0.3
447,671 - MIT1002_00414 0.61 +0.9
447,690 + MIT1002_00414 0.64 -1.3
447,690 + MIT1002_00414 0.64 +0.5
447,690 + MIT1002_00414 0.64 +0.4
447,690 + MIT1002_00414 0.64 +0.7
447,698 - MIT1002_00414 0.65 -0.4
447,698 - MIT1002_00414 0.65 -0.3
447,698 - MIT1002_00414 0.65 -2.6
447,700 + MIT1002_00414 0.65 -0.2
447,708 - MIT1002_00414 0.66 -0.7
447,724 + MIT1002_00414 0.69 +0.8
447,739 + MIT1002_00414 0.71 +0.5
447,789 - MIT1002_00414 0.78 +0.1
447,811 + MIT1002_00414 0.81 -0.2
447,811 + MIT1002_00414 0.81 +0.5
447,850 + MIT1002_00414 0.86 +0.2
447,855 - MIT1002_00414 0.87 -0.4
447,860 - MIT1002_00414 0.88 +0.6
447,860 - MIT1002_00414 0.88 +0.7
447,860 - MIT1002_00414 0.88 +0.3
447,932 - -1.0
447,932 - -0.1
447,967 - -0.4
447,973 - -0.9
447,974 - +1.1

Or see this region's nucleotide sequence