Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00320

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment B, time point 1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMIT1002_00319 and MIT1002_00320 are separated by 858 nucleotidesMIT1002_00320 and MIT1002_00321 are separated by 80 nucleotidesMIT1002_00321 and MIT1002_00322 are separated by 96 nucleotides MIT1002_00319: MIT1002_00319 - Serine/threonine-protein phosphatase 1, at 346,951 to 347,370 _00319 MIT1002_00320: MIT1002_00320 - Protein of unknown function, DUF, at 348,229 to 348,720 _00320 MIT1002_00321: MIT1002_00321 - Copper resistance protein CopC, at 348,801 to 349,154 _00321 MIT1002_00322: MIT1002_00322 - transposase/IS protein, at 349,251 to 349,997 _00322 Position (kb) 348 349Strain fitness (log2 ratio) -2 -1 0 1at 347.279 kb on + strand, within MIT1002_00319at 347.283 kb on + strand, within MIT1002_00319at 347.283 kb on + strand, within MIT1002_00319at 347.283 kb on + strand, within MIT1002_00319at 347.283 kb on + strand, within MIT1002_00319at 347.283 kb on + strand, within MIT1002_00319at 347.283 kb on + strand, within MIT1002_00319at 347.283 kb on + strand, within MIT1002_00319at 347.283 kb on + strand, within MIT1002_00319at 347.283 kb on + strand, within MIT1002_00319at 347.283 kb on + strand, within MIT1002_00319at 347.283 kb on + strand, within MIT1002_00319at 347.283 kb on + strand, within MIT1002_00319at 347.283 kb on + strand, within MIT1002_00319at 347.283 kb on + strand, within MIT1002_00319at 347.283 kb on + strand, within MIT1002_00319at 347.283 kb on + strand, within MIT1002_00319at 347.283 kb on + strand, within MIT1002_00319at 347.283 kb on + strand, within MIT1002_00319at 347.291 kb on - strand, within MIT1002_00319at 347.291 kb on - strand, within MIT1002_00319at 347.291 kb on - strand, within MIT1002_00319at 347.291 kb on - strand, within MIT1002_00319at 347.291 kb on - strand, within MIT1002_00319at 347.291 kb on - strand, within MIT1002_00319at 347.291 kb on - strand, within MIT1002_00319at 347.291 kb on - strand, within MIT1002_00319at 347.360 kb on + strandat 347.374 kb on - strandat 347.493 kb on + strandat 347.515 kb on + strandat 347.515 kb on - strandat 347.533 kb on + strandat 347.555 kb on - strandat 347.573 kb on + strandat 347.617 kb on + strandat 347.625 kb on - strandat 347.625 kb on - strandat 347.625 kb on - strandat 347.625 kb on - strandat 347.659 kb on - strandat 347.676 kb on - strandat 347.725 kb on + strandat 347.773 kb on - strandat 347.794 kb on + strandat 347.802 kb on - strandat 347.803 kb on + strandat 347.818 kb on - strandat 347.905 kb on - strandat 347.915 kb on - strandat 347.915 kb on - strandat 347.915 kb on - strandat 348.034 kb on - strandat 348.034 kb on - strandat 348.034 kb on - strandat 348.090 kb on + strandat 348.119 kb on + strandat 348.133 kb on - strandat 348.379 kb on - strand, within MIT1002_00320at 348.395 kb on + strand, within MIT1002_00320at 348.407 kb on + strand, within MIT1002_00320at 348.840 kb on + strand, within MIT1002_00321at 348.840 kb on + strand, within MIT1002_00321at 348.840 kb on + strand, within MIT1002_00321at 348.840 kb on + strand, within MIT1002_00321at 348.840 kb on + strand, within MIT1002_00321at 348.840 kb on + strand, within MIT1002_00321at 348.840 kb on + strand, within MIT1002_00321at 348.840 kb on + strand, within MIT1002_00321at 348.842 kb on + strand, within MIT1002_00321at 348.928 kb on - strand, within MIT1002_00321at 348.930 kb on - strand, within MIT1002_00321at 349.047 kb on + strand, within MIT1002_00321at 349.055 kb on - strand, within MIT1002_00321at 349.067 kb on - strand, within MIT1002_00321at 349.074 kb on + strand, within MIT1002_00321at 349.113 kb on - strand, within MIT1002_00321at 349.118 kb on - strand, within MIT1002_00321at 349.359 kb on - strand, within MIT1002_00322at 349.377 kb on - strand, within MIT1002_00322at 349.453 kb on + strand, within MIT1002_00322at 349.546 kb on - strand, within MIT1002_00322at 349.546 kb on - strand, within MIT1002_00322at 349.630 kb on + strand, within MIT1002_00322at 349.692 kb on - strand, within MIT1002_00322at 349.703 kb on + strand, within MIT1002_00322

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment B, time point 1
remove
347,279 + MIT1002_00319 0.78 +0.8
347,283 + MIT1002_00319 0.79 -1.0
347,283 + MIT1002_00319 0.79 +0.2
347,283 + MIT1002_00319 0.79 -0.7
347,283 + MIT1002_00319 0.79 +1.6
347,283 + MIT1002_00319 0.79 +0.1
347,283 + MIT1002_00319 0.79 +0.9
347,283 + MIT1002_00319 0.79 -0.8
347,283 + MIT1002_00319 0.79 -0.2
347,283 + MIT1002_00319 0.79 +1.6
347,283 + MIT1002_00319 0.79 +0.1
347,283 + MIT1002_00319 0.79 +0.6
347,283 + MIT1002_00319 0.79 -2.1
347,283 + MIT1002_00319 0.79 +1.2
347,283 + MIT1002_00319 0.79 +0.2
347,283 + MIT1002_00319 0.79 -0.9
347,283 + MIT1002_00319 0.79 +0.5
347,283 + MIT1002_00319 0.79 +0.2
347,283 + MIT1002_00319 0.79 -0.3
347,291 - MIT1002_00319 0.81 +0.0
347,291 - MIT1002_00319 0.81 -0.8
347,291 - MIT1002_00319 0.81 +0.5
347,291 - MIT1002_00319 0.81 +0.2
347,291 - MIT1002_00319 0.81 +1.0
347,291 - MIT1002_00319 0.81 +0.5
347,291 - MIT1002_00319 0.81 +0.4
347,291 - MIT1002_00319 0.81 +0.5
347,360 + +0.5
347,374 - -1.9
347,493 + +0.8
347,515 + -0.4
347,515 - +0.3
347,533 + +0.7
347,555 - +0.1
347,573 + -0.5
347,617 + +1.0
347,625 - +1.6
347,625 - +0.2
347,625 - -0.4
347,625 - -0.4
347,659 - -1.8
347,676 - -1.2
347,725 + +0.8
347,773 - +1.6
347,794 + -1.5
347,802 - -0.8
347,803 + -0.3
347,818 - +0.7
347,905 - -0.5
347,915 - +0.8
347,915 - -0.5
347,915 - +0.1
348,034 - +0.8
348,034 - -2.1
348,034 - -0.3
348,090 + +0.1
348,119 + -0.1
348,133 - +1.1
348,379 - MIT1002_00320 0.30 -1.3
348,395 + MIT1002_00320 0.34 -0.4
348,407 + MIT1002_00320 0.36 -1.2
348,840 + MIT1002_00321 0.11 +0.2
348,840 + MIT1002_00321 0.11 -0.5
348,840 + MIT1002_00321 0.11 -0.1
348,840 + MIT1002_00321 0.11 +0.5
348,840 + MIT1002_00321 0.11 -1.9
348,840 + MIT1002_00321 0.11 -0.4
348,840 + MIT1002_00321 0.11 +0.5
348,840 + MIT1002_00321 0.11 -0.0
348,842 + MIT1002_00321 0.12 +0.1
348,928 - MIT1002_00321 0.36 +0.7
348,930 - MIT1002_00321 0.36 -2.2
349,047 + MIT1002_00321 0.69 -0.4
349,055 - MIT1002_00321 0.72 -1.9
349,067 - MIT1002_00321 0.75 -0.9
349,074 + MIT1002_00321 0.77 -0.0
349,113 - MIT1002_00321 0.88 -0.4
349,118 - MIT1002_00321 0.90 -0.7
349,359 - MIT1002_00322 0.14 -0.7
349,377 - MIT1002_00322 0.17 -0.1
349,453 + MIT1002_00322 0.27 +0.9
349,546 - MIT1002_00322 0.39 +1.2
349,546 - MIT1002_00322 0.39 +0.4
349,630 + MIT1002_00322 0.51 +1.1
349,692 - MIT1002_00322 0.59 -1.4
349,703 + MIT1002_00322 0.61 +0.6

Or see this region's nucleotide sequence