Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment B, time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00089 and MIT1002_00090 are separated by 2 nucleotides MIT1002_00090 and MIT1002_00091 are separated by 98 nucleotides
MIT1002_00089: MIT1002_00089 - putative ATPase, at 96,038 to 97,423
_00089
MIT1002_00090: MIT1002_00090 - hypothetical protein, at 97,426 to 98,538
_00090
MIT1002_00091: MIT1002_00091 - hypothetical protein, at 98,637 to 99,863
_00091
Position (kb) 97
98
99 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 96.510 kb on - strand, within MIT1002_00089 at 96.531 kb on - strand, within MIT1002_00089 at 96.544 kb on + strand, within MIT1002_00089 at 96.544 kb on + strand, within MIT1002_00089 at 96.544 kb on + strand, within MIT1002_00089 at 96.544 kb on + strand, within MIT1002_00089 at 96.544 kb on + strand, within MIT1002_00089 at 96.552 kb on - strand, within MIT1002_00089 at 96.552 kb on - strand, within MIT1002_00089 at 96.552 kb on - strand, within MIT1002_00089 at 96.631 kb on - strand, within MIT1002_00089 at 96.676 kb on + strand, within MIT1002_00089 at 96.688 kb on + strand, within MIT1002_00089 at 96.690 kb on - strand, within MIT1002_00089 at 96.735 kb on + strand, within MIT1002_00089 at 96.757 kb on - strand, within MIT1002_00089 at 96.843 kb on - strand, within MIT1002_00089 at 96.857 kb on - strand, within MIT1002_00089 at 96.915 kb on + strand, within MIT1002_00089 at 96.921 kb on + strand, within MIT1002_00089 at 96.921 kb on + strand, within MIT1002_00089 at 96.948 kb on - strand, within MIT1002_00089 at 96.983 kb on + strand, within MIT1002_00089 at 97.083 kb on + strand, within MIT1002_00089 at 97.083 kb on + strand, within MIT1002_00089 at 97.147 kb on + strand, within MIT1002_00089 at 97.227 kb on - strand, within MIT1002_00089 at 97.257 kb on + strand, within MIT1002_00089 at 97.262 kb on - strand, within MIT1002_00089 at 97.288 kb on - strand at 97.309 kb on + strand at 97.334 kb on - strand at 97.350 kb on + strand at 97.408 kb on + strand at 97.408 kb on + strand at 97.408 kb on + strand at 97.408 kb on + strand at 97.416 kb on - strand at 97.416 kb on - strand at 97.418 kb on + strand at 97.438 kb on + strand at 97.445 kb on - strand at 97.457 kb on + strand at 97.483 kb on - strand at 97.522 kb on + strand at 97.575 kb on + strand, within MIT1002_00090 at 97.629 kb on - strand, within MIT1002_00090 at 97.630 kb on - strand, within MIT1002_00090 at 97.638 kb on + strand, within MIT1002_00090 at 97.646 kb on - strand, within MIT1002_00090 at 97.707 kb on + strand, within MIT1002_00090 at 97.707 kb on + strand, within MIT1002_00090 at 97.707 kb on + strand, within MIT1002_00090 at 97.715 kb on - strand, within MIT1002_00090 at 97.715 kb on - strand, within MIT1002_00090 at 97.732 kb on - strand, within MIT1002_00090 at 97.819 kb on + strand, within MIT1002_00090 at 97.950 kb on + strand, within MIT1002_00090 at 97.978 kb on - strand, within MIT1002_00090 at 98.042 kb on + strand, within MIT1002_00090 at 98.050 kb on - strand, within MIT1002_00090 at 98.076 kb on + strand, within MIT1002_00090 at 98.076 kb on + strand, within MIT1002_00090 at 98.076 kb on + strand, within MIT1002_00090 at 98.084 kb on - strand, within MIT1002_00090 at 98.084 kb on - strand, within MIT1002_00090 at 98.084 kb on - strand, within MIT1002_00090 at 98.093 kb on + strand, within MIT1002_00090 at 98.102 kb on + strand, within MIT1002_00090 at 98.135 kb on + strand, within MIT1002_00090 at 98.144 kb on + strand, within MIT1002_00090 at 98.169 kb on + strand, within MIT1002_00090 at 98.169 kb on + strand, within MIT1002_00090 at 98.177 kb on - strand, within MIT1002_00090 at 98.582 kb on + strand at 98.582 kb on + strand at 98.582 kb on + strand at 98.590 kb on - strand at 98.590 kb on - strand at 98.614 kb on - strand at 98.616 kb on + strand at 98.622 kb on - strand at 98.624 kb on - strand at 98.655 kb on + strand at 98.671 kb on + strand at 98.676 kb on + strand at 98.729 kb on + strand at 98.745 kb on + strand at 98.745 kb on + strand at 98.745 kb on + strand at 98.745 kb on + strand at 98.746 kb on - strand at 98.753 kb on - strand at 98.753 kb on - strand at 98.753 kb on - strand at 98.753 kb on - strand at 98.766 kb on + strand, within MIT1002_00091 at 98.774 kb on - strand, within MIT1002_00091 at 98.774 kb on - strand, within MIT1002_00091 at 98.782 kb on + strand, within MIT1002_00091 at 98.791 kb on + strand, within MIT1002_00091 at 98.804 kb on + strand, within MIT1002_00091 at 98.812 kb on - strand, within MIT1002_00091 at 98.812 kb on - strand, within MIT1002_00091 at 98.812 kb on - strand, within MIT1002_00091 at 98.821 kb on + strand, within MIT1002_00091 at 98.827 kb on - strand, within MIT1002_00091 at 98.837 kb on - strand, within MIT1002_00091 at 98.906 kb on + strand, within MIT1002_00091 at 98.906 kb on + strand, within MIT1002_00091 at 98.906 kb on + strand, within MIT1002_00091 at 98.906 kb on + strand, within MIT1002_00091 at 98.911 kb on + strand, within MIT1002_00091 at 98.914 kb on - strand, within MIT1002_00091 at 98.914 kb on - strand, within MIT1002_00091 at 98.914 kb on - strand, within MIT1002_00091 at 98.914 kb on - strand, within MIT1002_00091 at 98.914 kb on - strand, within MIT1002_00091 at 98.914 kb on - strand, within MIT1002_00091 at 98.916 kb on + strand, within MIT1002_00091 at 98.916 kb on + strand, within MIT1002_00091 at 98.916 kb on + strand, within MIT1002_00091 at 98.920 kb on - strand, within MIT1002_00091 at 98.929 kb on - strand, within MIT1002_00091 at 98.929 kb on - strand, within MIT1002_00091 at 98.936 kb on + strand, within MIT1002_00091 at 98.936 kb on + strand, within MIT1002_00091 at 98.972 kb on + strand, within MIT1002_00091 at 99.035 kb on - strand, within MIT1002_00091 at 99.075 kb on + strand, within MIT1002_00091 at 99.076 kb on + strand, within MIT1002_00091 at 99.083 kb on - strand, within MIT1002_00091 at 99.084 kb on - strand, within MIT1002_00091 at 99.098 kb on + strand, within MIT1002_00091 at 99.180 kb on + strand, within MIT1002_00091 at 99.215 kb on + strand, within MIT1002_00091 at 99.222 kb on + strand, within MIT1002_00091 at 99.223 kb on + strand, within MIT1002_00091 at 99.223 kb on + strand, within MIT1002_00091 at 99.252 kb on - strand, within MIT1002_00091 at 99.348 kb on - strand, within MIT1002_00091 at 99.367 kb on + strand, within MIT1002_00091 at 99.377 kb on + strand, within MIT1002_00091 at 99.414 kb on - strand, within MIT1002_00091 at 99.419 kb on - strand, within MIT1002_00091 at 99.451 kb on - strand, within MIT1002_00091 at 99.461 kb on - strand, within MIT1002_00091 at 99.461 kb on - strand, within MIT1002_00091 at 99.483 kb on + strand, within MIT1002_00091
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment B, time point 1 remove 96,510 - MIT1002_00089 0.34 -0.0 96,531 - MIT1002_00089 0.36 +0.9 96,544 + MIT1002_00089 0.37 +0.1 96,544 + MIT1002_00089 0.37 +0.2 96,544 + MIT1002_00089 0.37 +0.2 96,544 + MIT1002_00089 0.37 -2.0 96,544 + MIT1002_00089 0.37 -0.9 96,552 - MIT1002_00089 0.37 +1.0 96,552 - MIT1002_00089 0.37 -0.5 96,552 - MIT1002_00089 0.37 -1.4 96,631 - MIT1002_00089 0.43 -0.8 96,676 + MIT1002_00089 0.46 -0.2 96,688 + MIT1002_00089 0.47 -2.3 96,690 - MIT1002_00089 0.47 -1.0 96,735 + MIT1002_00089 0.50 +1.3 96,757 - MIT1002_00089 0.52 -0.0 96,843 - MIT1002_00089 0.58 +1.3 96,857 - MIT1002_00089 0.59 +2.0 96,915 + MIT1002_00089 0.63 -0.2 96,921 + MIT1002_00089 0.64 +0.7 96,921 + MIT1002_00089 0.64 -1.2 96,948 - MIT1002_00089 0.66 -1.6 96,983 + MIT1002_00089 0.68 +0.7 97,083 + MIT1002_00089 0.75 -0.8 97,083 + MIT1002_00089 0.75 +0.0 97,147 + MIT1002_00089 0.80 +0.1 97,227 - MIT1002_00089 0.86 +0.7 97,257 + MIT1002_00089 0.88 -1.6 97,262 - MIT1002_00089 0.88 +0.8 97,288 - -1.0 97,309 + -1.0 97,334 - +0.7 97,350 + -0.2 97,408 + +0.0 97,408 + +0.9 97,408 + -0.1 97,408 + +0.8 97,416 - -1.1 97,416 - +0.6 97,418 + -0.9 97,438 + -0.1 97,445 - -0.1 97,457 + -1.9 97,483 - +0.5 97,522 + +0.6 97,575 + MIT1002_00090 0.13 -0.2 97,629 - MIT1002_00090 0.18 -2.4 97,630 - MIT1002_00090 0.18 +0.3 97,638 + MIT1002_00090 0.19 -0.2 97,646 - MIT1002_00090 0.20 +0.4 97,707 + MIT1002_00090 0.25 -1.8 97,707 + MIT1002_00090 0.25 -1.6 97,707 + MIT1002_00090 0.25 +1.3 97,715 - MIT1002_00090 0.26 +0.2 97,715 - MIT1002_00090 0.26 +0.6 97,732 - MIT1002_00090 0.27 -0.1 97,819 + MIT1002_00090 0.35 +0.4 97,950 + MIT1002_00090 0.47 +0.6 97,978 - MIT1002_00090 0.50 -1.6 98,042 + MIT1002_00090 0.55 +0.2 98,050 - MIT1002_00090 0.56 -2.0 98,076 + MIT1002_00090 0.58 +0.4 98,076 + MIT1002_00090 0.58 -3.1 98,076 + MIT1002_00090 0.58 -3.2 98,084 - MIT1002_00090 0.59 +0.1 98,084 - MIT1002_00090 0.59 +0.4 98,084 - MIT1002_00090 0.59 -2.2 98,093 + MIT1002_00090 0.60 +0.3 98,102 + MIT1002_00090 0.61 +0.3 98,135 + MIT1002_00090 0.64 +0.4 98,144 + MIT1002_00090 0.65 -1.2 98,169 + MIT1002_00090 0.67 +0.5 98,169 + MIT1002_00090 0.67 +0.4 98,177 - MIT1002_00090 0.67 +0.5 98,582 + +1.3 98,582 + +1.3 98,582 + -1.1 98,590 - -0.2 98,590 - +0.8 98,614 - -0.2 98,616 + +1.6 98,622 - +0.4 98,624 - +0.1 98,655 + +0.0 98,671 + -0.1 98,676 + -1.4 98,729 + -0.9 98,745 + -0.1 98,745 + -0.6 98,745 + -0.5 98,745 + -1.1 98,746 - -0.5 98,753 - -0.7 98,753 - +0.9 98,753 - +0.7 98,753 - +0.3 98,766 + MIT1002_00091 0.11 -0.5 98,774 - MIT1002_00091 0.11 +0.4 98,774 - MIT1002_00091 0.11 -0.4 98,782 + MIT1002_00091 0.12 -0.4 98,791 + MIT1002_00091 0.13 +0.3 98,804 + MIT1002_00091 0.14 +1.0 98,812 - MIT1002_00091 0.14 -0.9 98,812 - MIT1002_00091 0.14 -0.5 98,812 - MIT1002_00091 0.14 +0.3 98,821 + MIT1002_00091 0.15 -1.2 98,827 - MIT1002_00091 0.15 -2.2 98,837 - MIT1002_00091 0.16 -2.7 98,906 + MIT1002_00091 0.22 -0.6 98,906 + MIT1002_00091 0.22 -1.3 98,906 + MIT1002_00091 0.22 -1.2 98,906 + MIT1002_00091 0.22 -2.2 98,911 + MIT1002_00091 0.22 -1.6 98,914 - MIT1002_00091 0.23 -1.3 98,914 - MIT1002_00091 0.23 -0.8 98,914 - MIT1002_00091 0.23 -1.1 98,914 - MIT1002_00091 0.23 -0.9 98,914 - MIT1002_00091 0.23 -0.8 98,914 - MIT1002_00091 0.23 +0.2 98,916 + MIT1002_00091 0.23 -0.6 98,916 + MIT1002_00091 0.23 +0.2 98,916 + MIT1002_00091 0.23 -1.7 98,920 - MIT1002_00091 0.23 -0.7 98,929 - MIT1002_00091 0.24 -0.7 98,929 - MIT1002_00091 0.24 -0.1 98,936 + MIT1002_00091 0.24 +0.1 98,936 + MIT1002_00091 0.24 -0.7 98,972 + MIT1002_00091 0.27 -0.1 99,035 - MIT1002_00091 0.32 -0.9 99,075 + MIT1002_00091 0.36 -1.2 99,076 + MIT1002_00091 0.36 +1.1 99,083 - MIT1002_00091 0.36 +1.3 99,084 - MIT1002_00091 0.36 -1.3 99,098 + MIT1002_00091 0.38 +1.0 99,180 + MIT1002_00091 0.44 -2.0 99,215 + MIT1002_00091 0.47 -0.5 99,222 + MIT1002_00091 0.48 +0.1 99,223 + MIT1002_00091 0.48 -0.4 99,223 + MIT1002_00091 0.48 +1.6 99,252 - MIT1002_00091 0.50 +2.0 99,348 - MIT1002_00091 0.58 +0.1 99,367 + MIT1002_00091 0.59 -0.2 99,377 + MIT1002_00091 0.60 +0.1 99,414 - MIT1002_00091 0.63 +0.1 99,419 - MIT1002_00091 0.64 +0.4 99,451 - MIT1002_00091 0.66 -0.8 99,461 - MIT1002_00091 0.67 -0.1 99,461 - MIT1002_00091 0.67 -1.9 99,483 + MIT1002_00091 0.69 +1.3
Or see this region's nucleotide sequence