Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS18160

Experiment: biofilm; Day4; SGW; Aluminum chloride 1mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS18155 and LRK53_RS18160 are separated by 156 nucleotidesLRK53_RS18160 and LRK53_RS18165 are separated by 15 nucleotides LRK53_RS18155: LRK53_RS18155 - hypothetical protein, at 5,420 to 6,601 _RS18155 LRK53_RS18160: LRK53_RS18160 - thermonuclease family protein, at 6,758 to 7,480 _RS18160 LRK53_RS18165: LRK53_RS18165 - hypothetical protein, at 7,496 to 8,482 _RS18165 LRK53_RS18170: LRK53_RS18170 - HAMP domain-containing histidine kinase, at 8,472 to 9,839 _RS18170 Position (kb) 6 7 8Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 5.979 kb on + strand, within LRK53_RS18155at 6.036 kb on - strand, within LRK53_RS18155at 6.179 kb on + strand, within LRK53_RS18155at 6.334 kb on - strand, within LRK53_RS18155at 6.581 kb on + strandat 6.631 kb on + strandat 6.632 kb on - strandat 6.728 kb on + strandat 6.753 kb on + strandat 6.753 kb on + strandat 6.753 kb on + strandat 6.753 kb on + strandat 6.753 kb on + strandat 6.753 kb on + strandat 6.753 kb on + strandat 6.753 kb on + strandat 6.753 kb on + strandat 6.753 kb on + strandat 6.753 kb on + strandat 6.753 kb on + strandat 6.754 kb on - strandat 6.754 kb on - strandat 6.754 kb on - strandat 6.754 kb on - strandat 6.754 kb on - strandat 6.754 kb on - strandat 6.754 kb on - strandat 6.754 kb on - strandat 6.754 kb on - strandat 6.754 kb on - strandat 6.754 kb on - strandat 6.754 kb on - strandat 6.754 kb on - strandat 6.754 kb on - strandat 6.754 kb on - strandat 6.754 kb on - strandat 6.754 kb on - strandat 6.842 kb on + strand, within LRK53_RS18160at 6.842 kb on + strand, within LRK53_RS18160at 6.842 kb on + strand, within LRK53_RS18160at 7.202 kb on + strand, within LRK53_RS18160at 7.202 kb on + strand, within LRK53_RS18160at 7.202 kb on + strand, within LRK53_RS18160at 7.202 kb on + strand, within LRK53_RS18160at 7.202 kb on + strand, within LRK53_RS18160at 7.202 kb on + strand, within LRK53_RS18160at 7.203 kb on - strand, within LRK53_RS18160at 7.225 kb on - strand, within LRK53_RS18160at 7.251 kb on - strand, within LRK53_RS18160at 7.388 kb on + strand, within LRK53_RS18160at 7.388 kb on + strand, within LRK53_RS18160at 7.388 kb on + strand, within LRK53_RS18160at 7.389 kb on - strand, within LRK53_RS18160at 7.389 kb on - strand, within LRK53_RS18160at 7.497 kb on + strandat 7.497 kb on + strandat 7.498 kb on - strandat 7.498 kb on - strandat 7.498 kb on - strandat 7.498 kb on - strandat 7.498 kb on - strandat 7.498 kb on - strandat 7.498 kb on - strandat 7.498 kb on - strandat 7.499 kb on + strandat 7.500 kb on - strandat 7.500 kb on - strandat 7.500 kb on - strandat 7.587 kb on + strandat 7.587 kb on + strandat 7.633 kb on - strand, within LRK53_RS18165at 7.846 kb on - strand, within LRK53_RS18165

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Per-strain Table

Position Strand Gene LocusTag Fraction biofilm; Day4; SGW; Aluminum chloride 1mM
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5,979 + LRK53_RS18155 0.47 -0.4
6,036 - LRK53_RS18155 0.52 +1.4
6,179 + LRK53_RS18155 0.64 -0.8
6,334 - LRK53_RS18155 0.77 -1.6
6,581 + -1.2
6,631 + -0.8
6,632 - -1.4
6,728 + -1.6
6,753 + +0.2
6,753 + +0.1
6,753 + -1.6
6,753 + -0.6
6,753 + -1.4
6,753 + -1.0
6,753 + -0.8
6,753 + -0.0
6,753 + -0.2
6,753 + +0.0
6,753 + -0.5
6,753 + +0.5
6,754 - -1.2
6,754 - -3.1
6,754 - -0.8
6,754 - +0.2
6,754 - -0.2
6,754 - -3.3
6,754 - +1.2
6,754 - -0.5
6,754 - -1.9
6,754 - +0.5
6,754 - +0.2
6,754 - -1.6
6,754 - -3.8
6,754 - -1.6
6,754 - -1.5
6,754 - -1.0
6,754 - -2.1
6,842 + LRK53_RS18160 0.12 -0.6
6,842 + LRK53_RS18160 0.12 -0.1
6,842 + LRK53_RS18160 0.12 +2.3
7,202 + LRK53_RS18160 0.61 -0.2
7,202 + LRK53_RS18160 0.61 -1.0
7,202 + LRK53_RS18160 0.61 +0.6
7,202 + LRK53_RS18160 0.61 -1.5
7,202 + LRK53_RS18160 0.61 -1.2
7,202 + LRK53_RS18160 0.61 -1.0
7,203 - LRK53_RS18160 0.62 -0.6
7,225 - LRK53_RS18160 0.65 -1.7
7,251 - LRK53_RS18160 0.68 -1.7
7,388 + LRK53_RS18160 0.87 -1.2
7,388 + LRK53_RS18160 0.87 -1.0
7,388 + LRK53_RS18160 0.87 -3.7
7,389 - LRK53_RS18160 0.87 -0.9
7,389 - LRK53_RS18160 0.87 -2.6
7,497 + -1.3
7,497 + +1.0
7,498 - -0.0
7,498 - -1.1
7,498 - +0.2
7,498 - -0.8
7,498 - -1.6
7,498 - -1.4
7,498 - -1.2
7,498 - -0.8
7,499 + -3.1
7,500 - -0.8
7,500 - -0.6
7,500 - -0.6
7,587 + -1.0
7,587 + -0.6
7,633 - LRK53_RS18165 0.14 +1.1
7,846 - LRK53_RS18165 0.35 +1.0

Or see this region's nucleotide sequence