Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS04970

Experiment: biofilm; Day4; SGW; Aluminum chloride 1mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS04965 and LRK53_RS04970 overlap by 4 nucleotidesLRK53_RS04970 and LRK53_RS04975 are separated by 75 nucleotides LRK53_RS04965: LRK53_RS04965 - ATP-binding protein, at 1,164,250 to 1,166,025 _RS04965 LRK53_RS04970: LRK53_RS04970 - response regulator, at 1,166,022 to 1,166,468 _RS04970 LRK53_RS04975: LRK53_RS04975 - response regulator, at 1,166,544 to 1,168,106 _RS04975 Position (kb) 1166 1167Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1165.121 kb on - strand, within LRK53_RS04965at 1165.121 kb on - strand, within LRK53_RS04965at 1165.121 kb on - strand, within LRK53_RS04965at 1165.163 kb on + strand, within LRK53_RS04965at 1165.163 kb on + strand, within LRK53_RS04965at 1165.163 kb on + strand, within LRK53_RS04965at 1165.163 kb on + strand, within LRK53_RS04965at 1165.163 kb on + strand, within LRK53_RS04965at 1165.163 kb on + strand, within LRK53_RS04965at 1165.163 kb on + strand, within LRK53_RS04965at 1165.163 kb on + strand, within LRK53_RS04965at 1165.163 kb on + strand, within LRK53_RS04965at 1165.163 kb on + strand, within LRK53_RS04965at 1165.163 kb on + strand, within LRK53_RS04965at 1165.163 kb on + strand, within LRK53_RS04965at 1165.163 kb on + strand, within LRK53_RS04965at 1165.164 kb on - strand, within LRK53_RS04965at 1165.164 kb on - strand, within LRK53_RS04965at 1165.164 kb on - strand, within LRK53_RS04965at 1165.164 kb on - strand, within LRK53_RS04965at 1165.164 kb on - strand, within LRK53_RS04965at 1165.164 kb on - strand, within LRK53_RS04965at 1165.164 kb on - strand, within LRK53_RS04965at 1165.164 kb on - strand, within LRK53_RS04965at 1165.164 kb on - strand, within LRK53_RS04965at 1165.164 kb on - strand, within LRK53_RS04965at 1165.164 kb on - strand, within LRK53_RS04965at 1165.164 kb on - strand, within LRK53_RS04965at 1165.164 kb on - strand, within LRK53_RS04965at 1165.338 kb on + strand, within LRK53_RS04965at 1165.338 kb on + strand, within LRK53_RS04965at 1165.338 kb on + strand, within LRK53_RS04965at 1165.338 kb on + strand, within LRK53_RS04965at 1165.338 kb on + strand, within LRK53_RS04965at 1165.338 kb on + strand, within LRK53_RS04965at 1165.338 kb on + strand, within LRK53_RS04965at 1165.338 kb on + strand, within LRK53_RS04965at 1165.338 kb on + strand, within LRK53_RS04965at 1165.339 kb on - strand, within LRK53_RS04965at 1165.339 kb on - strand, within LRK53_RS04965at 1165.339 kb on - strand, within LRK53_RS04965at 1165.342 kb on + strand, within LRK53_RS04965at 1165.447 kb on + strand, within LRK53_RS04965at 1165.447 kb on + strand, within LRK53_RS04965at 1165.448 kb on - strand, within LRK53_RS04965at 1165.448 kb on - strand, within LRK53_RS04965at 1165.448 kb on - strand, within LRK53_RS04965at 1165.448 kb on - strand, within LRK53_RS04965at 1165.448 kb on - strand, within LRK53_RS04965at 1165.448 kb on - strand, within LRK53_RS04965at 1165.614 kb on + strand, within LRK53_RS04965at 1165.614 kb on + strand, within LRK53_RS04965at 1165.614 kb on + strand, within LRK53_RS04965at 1165.614 kb on + strand, within LRK53_RS04965at 1165.708 kb on + strand, within LRK53_RS04965at 1165.708 kb on + strand, within LRK53_RS04965at 1165.708 kb on + strand, within LRK53_RS04965at 1165.709 kb on - strand, within LRK53_RS04965at 1165.709 kb on - strand, within LRK53_RS04965at 1165.709 kb on - strand, within LRK53_RS04965at 1165.709 kb on - strand, within LRK53_RS04965at 1165.709 kb on - strand, within LRK53_RS04965at 1165.709 kb on - strand, within LRK53_RS04965at 1165.771 kb on + strand, within LRK53_RS04965at 1165.772 kb on - strand, within LRK53_RS04965at 1165.772 kb on - strand, within LRK53_RS04965at 1165.816 kb on + strand, within LRK53_RS04965at 1165.816 kb on + strand, within LRK53_RS04965at 1165.816 kb on + strand, within LRK53_RS04965at 1165.816 kb on + strand, within LRK53_RS04965at 1165.817 kb on - strand, within LRK53_RS04965at 1165.817 kb on - strand, within LRK53_RS04965at 1165.817 kb on - strand, within LRK53_RS04965at 1166.134 kb on + strand, within LRK53_RS04970at 1166.134 kb on + strand, within LRK53_RS04970at 1166.134 kb on + strand, within LRK53_RS04970at 1166.134 kb on + strand, within LRK53_RS04970at 1166.134 kb on + strand, within LRK53_RS04970at 1166.134 kb on + strand, within LRK53_RS04970at 1166.134 kb on + strand, within LRK53_RS04970at 1166.134 kb on + strand, within LRK53_RS04970at 1166.135 kb on - strand, within LRK53_RS04970at 1166.135 kb on - strand, within LRK53_RS04970at 1166.135 kb on - strand, within LRK53_RS04970at 1166.135 kb on - strand, within LRK53_RS04970at 1166.135 kb on - strand, within LRK53_RS04970at 1166.135 kb on - strand, within LRK53_RS04970at 1166.160 kb on + strand, within LRK53_RS04970at 1166.160 kb on + strand, within LRK53_RS04970at 1166.160 kb on + strand, within LRK53_RS04970at 1166.160 kb on + strand, within LRK53_RS04970at 1166.160 kb on + strand, within LRK53_RS04970at 1166.161 kb on - strand, within LRK53_RS04970at 1166.161 kb on - strand, within LRK53_RS04970at 1166.370 kb on + strand, within LRK53_RS04970at 1166.370 kb on + strand, within LRK53_RS04970at 1166.370 kb on + strand, within LRK53_RS04970at 1166.371 kb on - strand, within LRK53_RS04970at 1166.371 kb on - strand, within LRK53_RS04970at 1166.371 kb on - strand, within LRK53_RS04970at 1166.371 kb on - strand, within LRK53_RS04970at 1166.371 kb on - strand, within LRK53_RS04970at 1166.417 kb on + strand, within LRK53_RS04970at 1166.417 kb on + strand, within LRK53_RS04970at 1166.417 kb on + strand, within LRK53_RS04970at 1166.417 kb on + strand, within LRK53_RS04970at 1166.417 kb on + strand, within LRK53_RS04970at 1166.417 kb on + strand, within LRK53_RS04970at 1166.417 kb on + strand, within LRK53_RS04970at 1166.418 kb on - strand, within LRK53_RS04970at 1166.418 kb on - strand, within LRK53_RS04970at 1166.508 kb on + strandat 1166.509 kb on - strandat 1166.655 kb on + strandat 1166.655 kb on + strandat 1166.655 kb on + strandat 1166.655 kb on + strandat 1166.655 kb on + strandat 1166.656 kb on - strandat 1166.656 kb on - strandat 1166.656 kb on - strandat 1166.800 kb on + strand, within LRK53_RS04975at 1166.800 kb on + strand, within LRK53_RS04975at 1166.800 kb on + strand, within LRK53_RS04975at 1166.800 kb on + strand, within LRK53_RS04975at 1166.800 kb on + strand, within LRK53_RS04975at 1166.800 kb on + strand, within LRK53_RS04975at 1166.801 kb on - strand, within LRK53_RS04975at 1166.801 kb on - strand, within LRK53_RS04975at 1166.801 kb on - strand, within LRK53_RS04975at 1166.801 kb on - strand, within LRK53_RS04975at 1166.801 kb on - strand, within LRK53_RS04975at 1166.801 kb on - strand, within LRK53_RS04975at 1166.801 kb on - strand, within LRK53_RS04975at 1166.801 kb on - strand, within LRK53_RS04975at 1166.874 kb on + strand, within LRK53_RS04975at 1166.874 kb on + strand, within LRK53_RS04975at 1166.874 kb on + strand, within LRK53_RS04975at 1166.874 kb on + strand, within LRK53_RS04975at 1166.874 kb on + strand, within LRK53_RS04975at 1166.874 kb on + strand, within LRK53_RS04975at 1166.875 kb on - strand, within LRK53_RS04975at 1166.875 kb on - strand, within LRK53_RS04975at 1166.875 kb on - strand, within LRK53_RS04975at 1166.875 kb on - strand, within LRK53_RS04975at 1166.875 kb on - strand, within LRK53_RS04975at 1167.084 kb on + strand, within LRK53_RS04975at 1167.084 kb on + strand, within LRK53_RS04975at 1167.085 kb on - strand, within LRK53_RS04975at 1167.085 kb on - strand, within LRK53_RS04975at 1167.085 kb on - strand, within LRK53_RS04975at 1167.465 kb on + strand, within LRK53_RS04975at 1167.465 kb on + strand, within LRK53_RS04975at 1167.465 kb on + strand, within LRK53_RS04975at 1167.465 kb on + strand, within LRK53_RS04975at 1167.465 kb on + strand, within LRK53_RS04975at 1167.465 kb on + strand, within LRK53_RS04975at 1167.465 kb on + strand, within LRK53_RS04975at 1167.466 kb on - strand, within LRK53_RS04975at 1167.466 kb on - strand, within LRK53_RS04975at 1167.466 kb on - strand, within LRK53_RS04975at 1167.466 kb on - strand, within LRK53_RS04975at 1167.466 kb on - strand, within LRK53_RS04975

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Per-strain Table

Position Strand Gene LocusTag Fraction biofilm; Day4; SGW; Aluminum chloride 1mM
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1,165,121 - LRK53_RS04965 0.49 -1.1
1,165,121 - LRK53_RS04965 0.49 -1.4
1,165,121 - LRK53_RS04965 0.49 -1.1
1,165,163 + LRK53_RS04965 0.51 -2.5
1,165,163 + LRK53_RS04965 0.51 -1.4
1,165,163 + LRK53_RS04965 0.51 -0.4
1,165,163 + LRK53_RS04965 0.51 -2.1
1,165,163 + LRK53_RS04965 0.51 -1.6
1,165,163 + LRK53_RS04965 0.51 +0.2
1,165,163 + LRK53_RS04965 0.51 +0.0
1,165,163 + LRK53_RS04965 0.51 -1.2
1,165,163 + LRK53_RS04965 0.51 -0.3
1,165,163 + LRK53_RS04965 0.51 -2.1
1,165,163 + LRK53_RS04965 0.51 -0.1
1,165,163 + LRK53_RS04965 0.51 -1.2
1,165,163 + LRK53_RS04965 0.51 -1.7
1,165,164 - LRK53_RS04965 0.51 -0.1
1,165,164 - LRK53_RS04965 0.51 +0.3
1,165,164 - LRK53_RS04965 0.51 -1.4
1,165,164 - LRK53_RS04965 0.51 +2.8
1,165,164 - LRK53_RS04965 0.51 -0.9
1,165,164 - LRK53_RS04965 0.51 -1.8
1,165,164 - LRK53_RS04965 0.51 +1.2
1,165,164 - LRK53_RS04965 0.51 -0.7
1,165,164 - LRK53_RS04965 0.51 -1.0
1,165,164 - LRK53_RS04965 0.51 -0.3
1,165,164 - LRK53_RS04965 0.51 -1.8
1,165,164 - LRK53_RS04965 0.51 -0.5
1,165,164 - LRK53_RS04965 0.51 -1.5
1,165,338 + LRK53_RS04965 0.61 -1.1
1,165,338 + LRK53_RS04965 0.61 +0.5
1,165,338 + LRK53_RS04965 0.61 -1.2
1,165,338 + LRK53_RS04965 0.61 -1.3
1,165,338 + LRK53_RS04965 0.61 -1.7
1,165,338 + LRK53_RS04965 0.61 +1.2
1,165,338 + LRK53_RS04965 0.61 -1.2
1,165,338 + LRK53_RS04965 0.61 -0.9
1,165,338 + LRK53_RS04965 0.61 -1.7
1,165,339 - LRK53_RS04965 0.61 -0.1
1,165,339 - LRK53_RS04965 0.61 +0.2
1,165,339 - LRK53_RS04965 0.61 -1.9
1,165,342 + LRK53_RS04965 0.61 -1.9
1,165,447 + LRK53_RS04965 0.67 +0.5
1,165,447 + LRK53_RS04965 0.67 +0.4
1,165,448 - LRK53_RS04965 0.67 -1.1
1,165,448 - LRK53_RS04965 0.67 -0.4
1,165,448 - LRK53_RS04965 0.67 -2.0
1,165,448 - LRK53_RS04965 0.67 -0.6
1,165,448 - LRK53_RS04965 0.67 -1.1
1,165,448 - LRK53_RS04965 0.67 +0.3
1,165,614 + LRK53_RS04965 0.77 -0.9
1,165,614 + LRK53_RS04965 0.77 +1.6
1,165,614 + LRK53_RS04965 0.77 -1.7
1,165,614 + LRK53_RS04965 0.77 -1.1
1,165,708 + LRK53_RS04965 0.82 -1.6
1,165,708 + LRK53_RS04965 0.82 -1.5
1,165,708 + LRK53_RS04965 0.82 +0.0
1,165,709 - LRK53_RS04965 0.82 -1.0
1,165,709 - LRK53_RS04965 0.82 -0.6
1,165,709 - LRK53_RS04965 0.82 -1.3
1,165,709 - LRK53_RS04965 0.82 -0.7
1,165,709 - LRK53_RS04965 0.82 -1.9
1,165,709 - LRK53_RS04965 0.82 -0.6
1,165,771 + LRK53_RS04965 0.86 +0.0
1,165,772 - LRK53_RS04965 0.86 +0.0
1,165,772 - LRK53_RS04965 0.86 -1.5
1,165,816 + LRK53_RS04965 0.88 -2.0
1,165,816 + LRK53_RS04965 0.88 -1.6
1,165,816 + LRK53_RS04965 0.88 -2.4
1,165,816 + LRK53_RS04965 0.88 -1.4
1,165,817 - LRK53_RS04965 0.88 -0.6
1,165,817 - LRK53_RS04965 0.88 -1.1
1,165,817 - LRK53_RS04965 0.88 -1.1
1,166,134 + LRK53_RS04970 0.25 -0.9
1,166,134 + LRK53_RS04970 0.25 -0.2
1,166,134 + LRK53_RS04970 0.25 -1.7
1,166,134 + LRK53_RS04970 0.25 -0.3
1,166,134 + LRK53_RS04970 0.25 -1.0
1,166,134 + LRK53_RS04970 0.25 +0.7
1,166,134 + LRK53_RS04970 0.25 +1.4
1,166,134 + LRK53_RS04970 0.25 -1.7
1,166,135 - LRK53_RS04970 0.25 -1.3
1,166,135 - LRK53_RS04970 0.25 -2.4
1,166,135 - LRK53_RS04970 0.25 -0.9
1,166,135 - LRK53_RS04970 0.25 -0.7
1,166,135 - LRK53_RS04970 0.25 -0.4
1,166,135 - LRK53_RS04970 0.25 -0.2
1,166,160 + LRK53_RS04970 0.31 -0.9
1,166,160 + LRK53_RS04970 0.31 -0.8
1,166,160 + LRK53_RS04970 0.31 +1.1
1,166,160 + LRK53_RS04970 0.31 -1.3
1,166,160 + LRK53_RS04970 0.31 -0.6
1,166,161 - LRK53_RS04970 0.31 -2.7
1,166,161 - LRK53_RS04970 0.31 -0.4
1,166,370 + LRK53_RS04970 0.78 -1.3
1,166,370 + LRK53_RS04970 0.78 -0.5
1,166,370 + LRK53_RS04970 0.78 +1.4
1,166,371 - LRK53_RS04970 0.78 -0.6
1,166,371 - LRK53_RS04970 0.78 +0.0
1,166,371 - LRK53_RS04970 0.78 -0.9
1,166,371 - LRK53_RS04970 0.78 -1.0
1,166,371 - LRK53_RS04970 0.78 +0.7
1,166,417 + LRK53_RS04970 0.88 +0.3
1,166,417 + LRK53_RS04970 0.88 -1.8
1,166,417 + LRK53_RS04970 0.88 -0.3
1,166,417 + LRK53_RS04970 0.88 -1.2
1,166,417 + LRK53_RS04970 0.88 +0.7
1,166,417 + LRK53_RS04970 0.88 -2.5
1,166,417 + LRK53_RS04970 0.88 -0.7
1,166,418 - LRK53_RS04970 0.89 -1.7
1,166,418 - LRK53_RS04970 0.89 -0.6
1,166,508 + -0.6
1,166,509 - +1.4
1,166,655 + -0.9
1,166,655 + -0.6
1,166,655 + -3.2
1,166,655 + -2.7
1,166,655 + -1.2
1,166,656 - -1.4
1,166,656 - -1.1
1,166,656 - -1.4
1,166,800 + LRK53_RS04975 0.16 +0.4
1,166,800 + LRK53_RS04975 0.16 +0.8
1,166,800 + LRK53_RS04975 0.16 -1.7
1,166,800 + LRK53_RS04975 0.16 -0.1
1,166,800 + LRK53_RS04975 0.16 -1.0
1,166,800 + LRK53_RS04975 0.16 -1.2
1,166,801 - LRK53_RS04975 0.16 -1.3
1,166,801 - LRK53_RS04975 0.16 -0.7
1,166,801 - LRK53_RS04975 0.16 +0.7
1,166,801 - LRK53_RS04975 0.16 -1.1
1,166,801 - LRK53_RS04975 0.16 +1.0
1,166,801 - LRK53_RS04975 0.16 -2.6
1,166,801 - LRK53_RS04975 0.16 -0.3
1,166,801 - LRK53_RS04975 0.16 -1.9
1,166,874 + LRK53_RS04975 0.21 -1.6
1,166,874 + LRK53_RS04975 0.21 -0.3
1,166,874 + LRK53_RS04975 0.21 -2.2
1,166,874 + LRK53_RS04975 0.21 -0.1
1,166,874 + LRK53_RS04975 0.21 -1.7
1,166,874 + LRK53_RS04975 0.21 -0.5
1,166,875 - LRK53_RS04975 0.21 +4.2
1,166,875 - LRK53_RS04975 0.21 -2.8
1,166,875 - LRK53_RS04975 0.21 -0.7
1,166,875 - LRK53_RS04975 0.21 -0.4
1,166,875 - LRK53_RS04975 0.21 -0.5
1,167,084 + LRK53_RS04975 0.35 -2.2
1,167,084 + LRK53_RS04975 0.35 -2.6
1,167,085 - LRK53_RS04975 0.35 -2.4
1,167,085 - LRK53_RS04975 0.35 +0.0
1,167,085 - LRK53_RS04975 0.35 -2.5
1,167,465 + LRK53_RS04975 0.59 +0.9
1,167,465 + LRK53_RS04975 0.59 +0.2
1,167,465 + LRK53_RS04975 0.59 -1.1
1,167,465 + LRK53_RS04975 0.59 -1.2
1,167,465 + LRK53_RS04975 0.59 -1.1
1,167,465 + LRK53_RS04975 0.59 -2.1
1,167,465 + LRK53_RS04975 0.59 -1.8
1,167,466 - LRK53_RS04975 0.59 -0.3
1,167,466 - LRK53_RS04975 0.59 -1.8
1,167,466 - LRK53_RS04975 0.59 +1.6
1,167,466 - LRK53_RS04975 0.59 +1.4
1,167,466 - LRK53_RS04975 0.59 -3.3

Or see this region's nucleotide sequence