Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS02345

Experiment: biofilm; Day4; SGW; Aluminum chloride 1mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS02335 and LRK53_RS02340 overlap by 23 nucleotidesLRK53_RS02340 and LRK53_RS02345 overlap by 8 nucleotidesLRK53_RS02345 and LRK53_RS02350 are separated by 28 nucleotides LRK53_RS02335: LRK53_RS02335 - hypothetical protein, at 537,288 to 537,977 _RS02335 LRK53_RS02340: LRK53_RS02340 - isopentenyl-diphosphate Delta-isomerase, at 537,955 to 538,542 _RS02340 LRK53_RS02345: LRK53_RS02345 - hydroxymethylglutaryl-CoA reductase, degradative, at 538,535 to 540,874 _RS02345 LRK53_RS02350: LRK53_RS02350 - hypothetical protein, at 540,903 to 541,922 _RS02350 Position (kb) 538 539 540 541Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 537.683 kb on - strand, within LRK53_RS02335at 537.683 kb on - strand, within LRK53_RS02335at 537.693 kb on + strand, within LRK53_RS02335at 537.813 kb on + strand, within LRK53_RS02335at 537.888 kb on + strand, within LRK53_RS02335at 538.151 kb on + strand, within LRK53_RS02340at 538.151 kb on + strand, within LRK53_RS02340at 538.151 kb on + strand, within LRK53_RS02340at 538.152 kb on - strand, within LRK53_RS02340at 538.152 kb on - strand, within LRK53_RS02340at 538.202 kb on + strand, within LRK53_RS02340at 538.203 kb on - strand, within LRK53_RS02340at 538.220 kb on + strand, within LRK53_RS02340at 538.221 kb on - strand, within LRK53_RS02340at 538.221 kb on - strand, within LRK53_RS02340at 538.564 kb on - strandat 538.623 kb on - strandat 538.875 kb on - strand, within LRK53_RS02345at 538.986 kb on + strand, within LRK53_RS02345at 539.017 kb on + strand, within LRK53_RS02345at 539.017 kb on + strand, within LRK53_RS02345at 539.017 kb on + strand, within LRK53_RS02345at 539.017 kb on + strand, within LRK53_RS02345at 539.017 kb on + strand, within LRK53_RS02345at 539.017 kb on + strand, within LRK53_RS02345at 539.017 kb on + strand, within LRK53_RS02345at 539.017 kb on + strand, within LRK53_RS02345at 539.017 kb on + strand, within LRK53_RS02345at 539.017 kb on + strand, within LRK53_RS02345at 539.017 kb on + strand, within LRK53_RS02345at 539.017 kb on + strand, within LRK53_RS02345at 539.018 kb on - strand, within LRK53_RS02345at 539.018 kb on - strand, within LRK53_RS02345at 539.018 kb on - strand, within LRK53_RS02345at 539.018 kb on - strand, within LRK53_RS02345at 539.018 kb on - strand, within LRK53_RS02345at 539.018 kb on - strand, within LRK53_RS02345at 539.394 kb on + strand, within LRK53_RS02345at 539.394 kb on + strand, within LRK53_RS02345at 539.395 kb on - strand, within LRK53_RS02345at 539.395 kb on - strand, within LRK53_RS02345at 539.901 kb on + strand, within LRK53_RS02345at 539.901 kb on + strand, within LRK53_RS02345at 539.901 kb on + strand, within LRK53_RS02345at 539.902 kb on - strand, within LRK53_RS02345at 539.902 kb on - strand, within LRK53_RS02345at 539.902 kb on - strand, within LRK53_RS02345at 539.902 kb on - strand, within LRK53_RS02345at 539.902 kb on - strand, within LRK53_RS02345at 540.241 kb on + strand, within LRK53_RS02345at 540.241 kb on + strand, within LRK53_RS02345at 540.242 kb on - strand, within LRK53_RS02345at 540.242 kb on - strand, within LRK53_RS02345at 540.242 kb on - strand, within LRK53_RS02345at 540.302 kb on + strand, within LRK53_RS02345at 540.302 kb on + strand, within LRK53_RS02345at 540.302 kb on + strand, within LRK53_RS02345at 540.302 kb on + strand, within LRK53_RS02345at 540.302 kb on + strand, within LRK53_RS02345at 540.302 kb on + strand, within LRK53_RS02345at 540.302 kb on + strand, within LRK53_RS02345at 540.302 kb on + strand, within LRK53_RS02345at 540.302 kb on + strand, within LRK53_RS02345at 540.303 kb on - strand, within LRK53_RS02345at 540.303 kb on - strand, within LRK53_RS02345at 540.303 kb on - strand, within LRK53_RS02345at 540.303 kb on - strand, within LRK53_RS02345at 540.303 kb on - strand, within LRK53_RS02345at 540.303 kb on - strand, within LRK53_RS02345at 540.303 kb on - strand, within LRK53_RS02345at 540.303 kb on - strand, within LRK53_RS02345at 540.303 kb on - strand, within LRK53_RS02345at 540.561 kb on + strand, within LRK53_RS02345at 540.561 kb on + strand, within LRK53_RS02345at 540.561 kb on + strand, within LRK53_RS02345at 540.561 kb on + strand, within LRK53_RS02345at 540.561 kb on + strand, within LRK53_RS02345at 540.561 kb on + strand, within LRK53_RS02345at 540.561 kb on + strand, within LRK53_RS02345at 540.561 kb on + strand, within LRK53_RS02345at 540.561 kb on + strand, within LRK53_RS02345at 540.561 kb on + strand, within LRK53_RS02345at 540.561 kb on + strand, within LRK53_RS02345at 540.561 kb on + strand, within LRK53_RS02345at 540.561 kb on + strand, within LRK53_RS02345at 540.561 kb on + strand, within LRK53_RS02345at 540.562 kb on - strand, within LRK53_RS02345at 540.562 kb on - strand, within LRK53_RS02345at 540.562 kb on - strand, within LRK53_RS02345at 540.562 kb on - strand, within LRK53_RS02345at 540.562 kb on - strand, within LRK53_RS02345at 540.562 kb on - strand, within LRK53_RS02345at 540.562 kb on - strand, within LRK53_RS02345at 540.562 kb on - strand, within LRK53_RS02345at 540.890 kb on + strandat 540.890 kb on + strandat 540.890 kb on + strandat 540.890 kb on + strandat 540.890 kb on + strandat 540.890 kb on + strandat 540.891 kb on - strandat 540.891 kb on - strandat 540.891 kb on - strandat 540.939 kb on + strandat 540.940 kb on - strandat 540.940 kb on - strandat 541.054 kb on + strand, within LRK53_RS02350at 541.054 kb on + strand, within LRK53_RS02350at 541.054 kb on + strand, within LRK53_RS02350at 541.054 kb on + strand, within LRK53_RS02350at 541.054 kb on + strand, within LRK53_RS02350at 541.054 kb on + strand, within LRK53_RS02350at 541.055 kb on - strand, within LRK53_RS02350at 541.055 kb on - strand, within LRK53_RS02350at 541.055 kb on - strand, within LRK53_RS02350at 541.055 kb on - strand, within LRK53_RS02350at 541.055 kb on - strand, within LRK53_RS02350at 541.055 kb on - strand, within LRK53_RS02350at 541.055 kb on - strand, within LRK53_RS02350at 541.055 kb on - strand, within LRK53_RS02350at 541.055 kb on - strand, within LRK53_RS02350at 541.394 kb on - strand, within LRK53_RS02350at 541.786 kb on + strand, within LRK53_RS02350at 541.873 kb on + strandat 541.873 kb on + strandat 541.873 kb on + strandat 541.873 kb on + strandat 541.874 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction biofilm; Day4; SGW; Aluminum chloride 1mM
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537,683 - LRK53_RS02335 0.57 +1.0
537,683 - LRK53_RS02335 0.57 -0.9
537,693 + LRK53_RS02335 0.59 +0.2
537,813 + LRK53_RS02335 0.76 -0.0
537,888 + LRK53_RS02335 0.87 -0.2
538,151 + LRK53_RS02340 0.33 +0.1
538,151 + LRK53_RS02340 0.33 +0.9
538,151 + LRK53_RS02340 0.33 -0.7
538,152 - LRK53_RS02340 0.34 +0.7
538,152 - LRK53_RS02340 0.34 -0.7
538,202 + LRK53_RS02340 0.42 -1.2
538,203 - LRK53_RS02340 0.42 +1.9
538,220 + LRK53_RS02340 0.45 +0.5
538,221 - LRK53_RS02340 0.45 -0.0
538,221 - LRK53_RS02340 0.45 -0.6
538,564 - +0.1
538,623 - +0.6
538,875 - LRK53_RS02345 0.15 -0.2
538,986 + LRK53_RS02345 0.19 +0.8
539,017 + LRK53_RS02345 0.21 +2.2
539,017 + LRK53_RS02345 0.21 +0.9
539,017 + LRK53_RS02345 0.21 -2.9
539,017 + LRK53_RS02345 0.21 +0.2
539,017 + LRK53_RS02345 0.21 -2.2
539,017 + LRK53_RS02345 0.21 -0.2
539,017 + LRK53_RS02345 0.21 -1.4
539,017 + LRK53_RS02345 0.21 -1.2
539,017 + LRK53_RS02345 0.21 -0.9
539,017 + LRK53_RS02345 0.21 -0.2
539,017 + LRK53_RS02345 0.21 -0.1
539,017 + LRK53_RS02345 0.21 +1.3
539,018 - LRK53_RS02345 0.21 -0.4
539,018 - LRK53_RS02345 0.21 -1.2
539,018 - LRK53_RS02345 0.21 +0.2
539,018 - LRK53_RS02345 0.21 +0.6
539,018 - LRK53_RS02345 0.21 -0.2
539,018 - LRK53_RS02345 0.21 -0.8
539,394 + LRK53_RS02345 0.37 -0.7
539,394 + LRK53_RS02345 0.37 -3.7
539,395 - LRK53_RS02345 0.37 +0.8
539,395 - LRK53_RS02345 0.37 -0.9
539,901 + LRK53_RS02345 0.58 -1.6
539,901 + LRK53_RS02345 0.58 +0.2
539,901 + LRK53_RS02345 0.58 -1.5
539,902 - LRK53_RS02345 0.58 -0.7
539,902 - LRK53_RS02345 0.58 -0.2
539,902 - LRK53_RS02345 0.58 -2.5
539,902 - LRK53_RS02345 0.58 -1.9
539,902 - LRK53_RS02345 0.58 +0.8
540,241 + LRK53_RS02345 0.73 -1.0
540,241 + LRK53_RS02345 0.73 -1.2
540,242 - LRK53_RS02345 0.73 +3.0
540,242 - LRK53_RS02345 0.73 -1.3
540,242 - LRK53_RS02345 0.73 +0.9
540,302 + LRK53_RS02345 0.76 -0.9
540,302 + LRK53_RS02345 0.76 +0.0
540,302 + LRK53_RS02345 0.76 -1.4
540,302 + LRK53_RS02345 0.76 -2.3
540,302 + LRK53_RS02345 0.76 -0.1
540,302 + LRK53_RS02345 0.76 -0.7
540,302 + LRK53_RS02345 0.76 -2.6
540,302 + LRK53_RS02345 0.76 -0.5
540,302 + LRK53_RS02345 0.76 -0.7
540,303 - LRK53_RS02345 0.76 -2.7
540,303 - LRK53_RS02345 0.76 -1.4
540,303 - LRK53_RS02345 0.76 -1.6
540,303 - LRK53_RS02345 0.76 +0.8
540,303 - LRK53_RS02345 0.76 +0.8
540,303 - LRK53_RS02345 0.76 -1.2
540,303 - LRK53_RS02345 0.76 +0.0
540,303 - LRK53_RS02345 0.76 -0.4
540,303 - LRK53_RS02345 0.76 +0.2
540,561 + LRK53_RS02345 0.87 -0.1
540,561 + LRK53_RS02345 0.87 -1.2
540,561 + LRK53_RS02345 0.87 -2.2
540,561 + LRK53_RS02345 0.87 -1.2
540,561 + LRK53_RS02345 0.87 -1.2
540,561 + LRK53_RS02345 0.87 -0.4
540,561 + LRK53_RS02345 0.87 -1.7
540,561 + LRK53_RS02345 0.87 +0.1
540,561 + LRK53_RS02345 0.87 +1.4
540,561 + LRK53_RS02345 0.87 -1.5
540,561 + LRK53_RS02345 0.87 -0.7
540,561 + LRK53_RS02345 0.87 -1.5
540,561 + LRK53_RS02345 0.87 +0.4
540,561 + LRK53_RS02345 0.87 -1.0
540,562 - LRK53_RS02345 0.87 -0.5
540,562 - LRK53_RS02345 0.87 -0.7
540,562 - LRK53_RS02345 0.87 +0.8
540,562 - LRK53_RS02345 0.87 -0.1
540,562 - LRK53_RS02345 0.87 -0.1
540,562 - LRK53_RS02345 0.87 +2.5
540,562 - LRK53_RS02345 0.87 -2.2
540,562 - LRK53_RS02345 0.87 -1.2
540,890 + +0.6
540,890 + -1.1
540,890 + -0.9
540,890 + -1.6
540,890 + -0.6
540,890 + -1.5
540,891 - -0.2
540,891 - -1.5
540,891 - -0.9
540,939 + -1.4
540,940 - +1.2
540,940 - -1.8
541,054 + LRK53_RS02350 0.15 -0.2
541,054 + LRK53_RS02350 0.15 +0.2
541,054 + LRK53_RS02350 0.15 +0.8
541,054 + LRK53_RS02350 0.15 +0.8
541,054 + LRK53_RS02350 0.15 +0.2
541,054 + LRK53_RS02350 0.15 -0.7
541,055 - LRK53_RS02350 0.15 -1.2
541,055 - LRK53_RS02350 0.15 -0.1
541,055 - LRK53_RS02350 0.15 +0.6
541,055 - LRK53_RS02350 0.15 -0.2
541,055 - LRK53_RS02350 0.15 -1.2
541,055 - LRK53_RS02350 0.15 -1.8
541,055 - LRK53_RS02350 0.15 -0.1
541,055 - LRK53_RS02350 0.15 +0.4
541,055 - LRK53_RS02350 0.15 -1.1
541,394 - LRK53_RS02350 0.48 -0.8
541,786 + LRK53_RS02350 0.87 -1.2
541,873 + -0.1
541,873 + -0.7
541,873 + -0.4
541,873 + -0.2
541,874 - -1.5

Or see this region's nucleotide sequence