Experiment: biofilm; Day4; SGW; Aluminum chloride 1mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS01175 and LRK53_RS01180 are separated by 116 nucleotides LRK53_RS01180 and LRK53_RS01185 are separated by 121 nucleotides LRK53_RS01185 and LRK53_RS01190 are separated by 56 nucleotides LRK53_RS01190 and LRK53_RS01195 overlap by 4 nucleotides LRK53_RS01195 and LRK53_RS01200 are separated by 53 nucleotides
LRK53_RS01175: LRK53_RS01175 - cytochrome c4, at 292,740 to 293,498
_RS01175
LRK53_RS01180: LRK53_RS01180 - GTP-binding protein, at 293,615 to 294,322
_RS01180
LRK53_RS01185: LRK53_RS01185 - GAF domain-containing protein, at 294,444 to 294,935
_RS01185
LRK53_RS01190: LRK53_RS01190 - hypothetical protein, at 294,992 to 295,183
_RS01190
LRK53_RS01195: LRK53_RS01195 - dethiobiotin synthase, at 295,180 to 295,857
_RS01195
LRK53_RS01200: LRK53_RS01200 - hypothetical protein, at 295,911 to 296,258
_RS01200
Position (kb) 294
295 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 293.448 kb on + strand at 293.449 kb on - strand at 293.499 kb on - strand at 293.499 kb on - strand at 293.499 kb on - strand at 293.594 kb on + strand at 293.594 kb on + strand at 293.594 kb on + strand at 293.594 kb on + strand at 293.594 kb on + strand at 293.594 kb on + strand at 293.594 kb on + strand at 293.594 kb on + strand at 293.594 kb on + strand at 293.594 kb on + strand at 293.594 kb on + strand at 293.594 kb on + strand at 293.594 kb on + strand at 293.594 kb on + strand at 293.594 kb on + strand at 293.594 kb on + strand at 293.594 kb on + strand at 293.594 kb on + strand at 293.594 kb on + strand at 293.594 kb on + strand at 293.594 kb on + strand at 293.594 kb on + strand at 293.594 kb on + strand at 293.594 kb on + strand at 293.594 kb on + strand at 293.594 kb on + strand at 293.594 kb on + strand at 293.594 kb on + strand at 293.594 kb on + strand at 293.594 kb on + strand at 293.594 kb on + strand at 293.594 kb on + strand at 294.328 kb on - strand at 294.328 kb on - strand at 294.328 kb on - strand at 294.328 kb on - strand at 294.328 kb on - strand at 294.328 kb on - strand at 294.422 kb on + strand at 294.422 kb on + strand at 294.422 kb on + strand at 294.422 kb on + strand at 294.422 kb on + strand at 294.422 kb on + strand at 294.422 kb on + strand at 294.422 kb on + strand at 294.760 kb on + strand, within LRK53_RS01185 at 294.760 kb on + strand, within LRK53_RS01185 at 294.760 kb on + strand, within LRK53_RS01185 at 294.760 kb on + strand, within LRK53_RS01185 at 294.761 kb on - strand, within LRK53_RS01185 at 294.761 kb on - strand, within LRK53_RS01185 at 294.761 kb on - strand, within LRK53_RS01185 at 294.761 kb on - strand, within LRK53_RS01185 at 294.766 kb on + strand, within LRK53_RS01185 at 294.766 kb on + strand, within LRK53_RS01185 at 294.766 kb on + strand, within LRK53_RS01185 at 294.766 kb on + strand, within LRK53_RS01185 at 294.767 kb on - strand, within LRK53_RS01185 at 294.767 kb on - strand, within LRK53_RS01185 at 294.767 kb on - strand, within LRK53_RS01185 at 294.767 kb on - strand, within LRK53_RS01185 at 294.767 kb on - strand, within LRK53_RS01185 at 294.802 kb on + strand, within LRK53_RS01185 at 294.889 kb on + strand at 294.889 kb on + strand at 294.889 kb on + strand at 294.890 kb on - strand at 294.890 kb on - strand at 294.890 kb on - strand at 294.890 kb on - strand at 294.890 kb on - strand at 294.890 kb on - strand at 294.910 kb on + strand at 294.910 kb on + strand at 294.910 kb on + strand at 294.910 kb on + strand at 294.910 kb on + strand at 294.910 kb on + strand at 294.910 kb on + strand at 294.911 kb on - strand at 294.911 kb on - strand at 294.911 kb on - strand at 294.911 kb on - strand at 294.911 kb on - strand at 294.911 kb on - strand at 294.911 kb on - strand at 294.911 kb on - strand at 294.961 kb on + strand at 294.961 kb on + strand at 294.962 kb on - strand at 294.962 kb on - strand at 294.962 kb on - strand at 294.964 kb on + strand at 294.964 kb on + strand at 294.964 kb on + strand at 294.964 kb on + strand at 294.964 kb on + strand at 294.964 kb on + strand at 294.964 kb on + strand at 294.965 kb on - strand at 294.965 kb on - strand at 294.965 kb on - strand at 294.965 kb on - strand at 294.965 kb on - strand at 294.965 kb on - strand at 294.965 kb on - strand at 295.118 kb on + strand, within LRK53_RS01190 at 295.118 kb on + strand, within LRK53_RS01190 at 295.118 kb on + strand, within LRK53_RS01190 at 295.118 kb on + strand, within LRK53_RS01190 at 295.118 kb on + strand, within LRK53_RS01190 at 295.118 kb on + strand, within LRK53_RS01190 at 295.118 kb on + strand, within LRK53_RS01190 at 295.118 kb on + strand, within LRK53_RS01190 at 295.118 kb on + strand, within LRK53_RS01190 at 295.118 kb on + strand, within LRK53_RS01190 at 295.118 kb on + strand, within LRK53_RS01190 at 295.119 kb on - strand, within LRK53_RS01190 at 295.119 kb on - strand, within LRK53_RS01190 at 295.119 kb on - strand, within LRK53_RS01190 at 295.119 kb on - strand, within LRK53_RS01190 at 295.119 kb on - strand, within LRK53_RS01190 at 295.119 kb on - strand, within LRK53_RS01190 at 295.119 kb on - strand, within LRK53_RS01190 at 295.119 kb on - strand, within LRK53_RS01190 at 295.384 kb on + strand, within LRK53_RS01195 at 295.384 kb on + strand, within LRK53_RS01195 at 295.826 kb on - strand at 295.926 kb on + strand at 295.926 kb on + strand at 295.926 kb on + strand at 295.926 kb on + strand at 295.926 kb on + strand at 295.927 kb on - strand at 295.927 kb on - strand at 295.927 kb on - strand at 295.927 kb on - strand at 295.927 kb on - strand at 295.927 kb on - strand at 295.927 kb on - strand at 295.929 kb on + strand at 295.929 kb on + strand at 295.929 kb on + strand at 295.929 kb on + strand at 295.929 kb on + strand at 295.929 kb on + strand at 295.929 kb on + strand at 295.929 kb on + strand at 295.929 kb on + strand at 295.929 kb on + strand at 295.929 kb on + strand at 295.929 kb on + strand at 295.929 kb on + strand at 295.929 kb on + strand at 295.929 kb on + strand at 295.929 kb on + strand at 295.929 kb on + strand at 295.929 kb on + strand at 295.929 kb on + strand at 295.929 kb on + strand at 295.929 kb on + strand at 295.929 kb on + strand at 295.929 kb on + strand at 295.930 kb on - strand at 295.930 kb on - strand at 295.930 kb on - strand at 295.930 kb on - strand at 295.930 kb on - strand at 295.930 kb on - strand at 295.930 kb on - strand at 295.930 kb on - strand at 295.930 kb on - strand at 295.930 kb on - strand at 295.930 kb on - strand at 295.930 kb on - strand at 295.930 kb on - strand at 295.930 kb on - strand at 295.930 kb on - strand at 295.930 kb on - strand at 295.930 kb on - strand at 295.930 kb on - strand at 295.930 kb on - strand at 295.930 kb on - strand at 295.930 kb on - strand at 295.930 kb on - strand at 295.930 kb on - strand at 295.930 kb on - strand at 295.930 kb on - strand at 295.930 kb on - strand at 295.930 kb on - strand at 295.930 kb on - strand at 295.930 kb on - strand at 295.930 kb on - strand at 295.930 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction biofilm; Day4; SGW; Aluminum chloride 1mM remove 293,448 + +1.9 293,449 - +1.5 293,499 - -0.1 293,499 - -0.4 293,499 - +1.0 293,594 + +0.5 293,594 + -0.3 293,594 + +0.5 293,594 + -0.5 293,594 + -0.1 293,594 + +0.3 293,594 + -0.3 293,594 + +3.5 293,594 + +0.3 293,594 + +0.9 293,594 + +1.3 293,594 + -0.3 293,594 + -0.3 293,594 + -0.6 293,594 + -0.3 293,594 + +0.1 293,594 + +0.5 293,594 + +0.9 293,594 + +0.5 293,594 + -0.8 293,594 + -1.2 293,594 + -0.7 293,594 + +0.3 293,594 + -0.6 293,594 + +0.1 293,594 + -0.1 293,594 + -1.5 293,594 + -1.3 293,594 + +1.3 293,594 + -0.1 293,594 + -0.5 293,594 + -0.7 294,328 - -0.9 294,328 - -2.4 294,328 - -2.5 294,328 - -0.3 294,328 - -1.7 294,328 - -1.0 294,422 + -0.8 294,422 + +1.3 294,422 + -0.4 294,422 + -3.7 294,422 + -2.2 294,422 + +0.9 294,422 + -0.7 294,422 + -2.6 294,760 + LRK53_RS01185 0.64 -0.0 294,760 + LRK53_RS01185 0.64 -0.7 294,760 + LRK53_RS01185 0.64 -0.3 294,760 + LRK53_RS01185 0.64 -3.6 294,761 - LRK53_RS01185 0.64 -1.2 294,761 - LRK53_RS01185 0.64 -1.2 294,761 - LRK53_RS01185 0.64 -0.5 294,761 - LRK53_RS01185 0.64 -0.5 294,766 + LRK53_RS01185 0.65 +0.2 294,766 + LRK53_RS01185 0.65 -1.2 294,766 + LRK53_RS01185 0.65 +0.1 294,766 + LRK53_RS01185 0.65 -1.5 294,767 - LRK53_RS01185 0.66 -0.5 294,767 - LRK53_RS01185 0.66 -0.6 294,767 - LRK53_RS01185 0.66 -0.9 294,767 - LRK53_RS01185 0.66 -0.5 294,767 - LRK53_RS01185 0.66 +0.9 294,802 + LRK53_RS01185 0.73 +0.4 294,889 + -0.3 294,889 + -1.9 294,889 + +0.5 294,890 - -1.1 294,890 - -0.3 294,890 - +0.1 294,890 - -1.5 294,890 - -2.5 294,890 - -1.5 294,910 + -0.5 294,910 + -0.2 294,910 + -2.6 294,910 + -0.7 294,910 + -0.0 294,910 + +1.6 294,910 + +0.8 294,911 - -0.3 294,911 - +2.9 294,911 - +0.4 294,911 - -1.7 294,911 - -0.1 294,911 - -0.7 294,911 - -1.7 294,911 - +1.6 294,961 + -0.4 294,961 + -1.6 294,962 - -1.9 294,962 - -0.6 294,962 - +1.5 294,964 + -0.9 294,964 + +0.3 294,964 + -0.9 294,964 + -0.5 294,964 + +0.1 294,964 + -0.9 294,964 + -3.1 294,965 - -1.6 294,965 - -0.2 294,965 - -0.3 294,965 - -2.1 294,965 - -0.5 294,965 - -0.6 294,965 - +0.6 295,118 + LRK53_RS01190 0.66 -0.9 295,118 + LRK53_RS01190 0.66 -0.1 295,118 + LRK53_RS01190 0.66 -1.5 295,118 + LRK53_RS01190 0.66 -0.5 295,118 + LRK53_RS01190 0.66 +0.1 295,118 + LRK53_RS01190 0.66 -2.5 295,118 + LRK53_RS01190 0.66 -1.1 295,118 + LRK53_RS01190 0.66 -0.8 295,118 + LRK53_RS01190 0.66 -1.3 295,118 + LRK53_RS01190 0.66 +0.6 295,118 + LRK53_RS01190 0.66 +0.1 295,119 - LRK53_RS01190 0.66 +0.5 295,119 - LRK53_RS01190 0.66 -0.8 295,119 - LRK53_RS01190 0.66 -1.8 295,119 - LRK53_RS01190 0.66 -0.1 295,119 - LRK53_RS01190 0.66 +2.5 295,119 - LRK53_RS01190 0.66 +0.5 295,119 - LRK53_RS01190 0.66 -3.8 295,119 - LRK53_RS01190 0.66 -2.5 295,384 + LRK53_RS01195 0.30 +0.1 295,384 + LRK53_RS01195 0.30 -1.8 295,826 - -0.7 295,926 + -0.7 295,926 + -0.3 295,926 + +0.4 295,926 + -0.7 295,926 + -0.5 295,927 - +1.0 295,927 - -1.5 295,927 - -0.2 295,927 - +2.9 295,927 - -0.7 295,927 - -0.6 295,927 - +2.1 295,929 + -0.8 295,929 + -1.3 295,929 + -0.0 295,929 + +0.3 295,929 + +0.5 295,929 + +1.9 295,929 + +0.8 295,929 + -0.9 295,929 + -1.0 295,929 + -1.9 295,929 + +0.3 295,929 + -1.8 295,929 + -0.3 295,929 + -0.8 295,929 + +0.4 295,929 + -1.6 295,929 + -1.8 295,929 + -0.5 295,929 + +0.1 295,929 + +1.3 295,929 + -0.3 295,929 + +0.5 295,929 + -1.4 295,930 - +0.7 295,930 - -0.6 295,930 - -1.0 295,930 - -1.9 295,930 - +0.1 295,930 - -0.8 295,930 - +0.1 295,930 - +0.1 295,930 - -0.5 295,930 - -1.5 295,930 - -0.3 295,930 - -0.7 295,930 - +0.4 295,930 - -0.8 295,930 - -0.8 295,930 - -0.6 295,930 - -0.8 295,930 - -1.5 295,930 - -0.0 295,930 - -0.5 295,930 - -2.2 295,930 - -0.7 295,930 - -1.2 295,930 - +0.9 295,930 - -0.0 295,930 - -0.0 295,930 - -2.8 295,930 - -1.4 295,930 - +0.1 295,930 - -0.3 295,930 - -0.7
Or see this region's nucleotide sequence