Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS00095

Experiment: biofilm; Day4; SGW; Aluminum chloride 1mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntLRK53_RS00090 and LRK53_RS00095 are separated by 127 nucleotidesLRK53_RS00095 and LRK53_RS00100 are separated by 318 nucleotides LRK53_RS00090: LRK53_RS00090 - MFS transporter, at 26,790 to 28,460 _RS00090 LRK53_RS00095: LRK53_RS00095 - AMP-binding protein, at 28,588 to 30,261 _RS00095 LRK53_RS00100: LRK53_RS00100 - IS110 family transposase, at 30,580 to 31,491 _RS00100 Position (kb) 28 29 30 31Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 27.588 kb on + strand, within LRK53_RS00090at 27.588 kb on + strand, within LRK53_RS00090at 27.603 kb on + strand, within LRK53_RS00090at 27.603 kb on + strand, within LRK53_RS00090at 27.603 kb on + strand, within LRK53_RS00090at 27.612 kb on + strand, within LRK53_RS00090at 27.612 kb on + strand, within LRK53_RS00090at 27.612 kb on + strand, within LRK53_RS00090at 27.612 kb on + strand, within LRK53_RS00090at 27.612 kb on + strand, within LRK53_RS00090at 27.612 kb on + strand, within LRK53_RS00090at 27.612 kb on + strand, within LRK53_RS00090at 27.612 kb on + strand, within LRK53_RS00090at 27.612 kb on + strand, within LRK53_RS00090at 27.612 kb on + strand, within LRK53_RS00090at 27.612 kb on + strand, within LRK53_RS00090at 27.612 kb on + strand, within LRK53_RS00090at 27.612 kb on + strand, within LRK53_RS00090at 27.612 kb on + strand, within LRK53_RS00090at 27.612 kb on + strand, within LRK53_RS00090at 27.612 kb on + strand, within LRK53_RS00090at 27.612 kb on + strand, within LRK53_RS00090at 27.613 kb on - strand, within LRK53_RS00090at 27.613 kb on - strand, within LRK53_RS00090at 27.613 kb on - strand, within LRK53_RS00090at 27.613 kb on - strand, within LRK53_RS00090at 27.613 kb on - strand, within LRK53_RS00090at 27.613 kb on - strand, within LRK53_RS00090at 27.613 kb on - strand, within LRK53_RS00090at 27.613 kb on - strand, within LRK53_RS00090at 27.613 kb on - strand, within LRK53_RS00090at 27.613 kb on - strand, within LRK53_RS00090at 27.613 kb on - strand, within LRK53_RS00090at 27.613 kb on - strand, within LRK53_RS00090at 27.613 kb on - strand, within LRK53_RS00090at 27.613 kb on - strand, within LRK53_RS00090at 27.735 kb on - strand, within LRK53_RS00090at 27.777 kb on + strand, within LRK53_RS00090at 27.777 kb on + strand, within LRK53_RS00090at 27.778 kb on - strand, within LRK53_RS00090at 27.778 kb on - strand, within LRK53_RS00090at 27.778 kb on - strand, within LRK53_RS00090at 27.778 kb on - strand, within LRK53_RS00090at 27.778 kb on - strand, within LRK53_RS00090at 27.778 kb on - strand, within LRK53_RS00090at 27.778 kb on - strand, within LRK53_RS00090at 27.942 kb on + strand, within LRK53_RS00090at 27.942 kb on + strand, within LRK53_RS00090at 27.942 kb on + strand, within LRK53_RS00090at 27.942 kb on + strand, within LRK53_RS00090at 27.942 kb on + strand, within LRK53_RS00090at 27.942 kb on + strand, within LRK53_RS00090at 27.942 kb on + strand, within LRK53_RS00090at 27.942 kb on + strand, within LRK53_RS00090at 27.943 kb on - strand, within LRK53_RS00090at 27.943 kb on - strand, within LRK53_RS00090at 27.943 kb on - strand, within LRK53_RS00090at 27.943 kb on - strand, within LRK53_RS00090at 27.943 kb on - strand, within LRK53_RS00090at 27.967 kb on - strand, within LRK53_RS00090at 27.967 kb on - strand, within LRK53_RS00090at 27.967 kb on - strand, within LRK53_RS00090at 28.197 kb on + strand, within LRK53_RS00090at 28.197 kb on + strand, within LRK53_RS00090at 28.197 kb on + strand, within LRK53_RS00090at 28.197 kb on + strand, within LRK53_RS00090at 28.197 kb on + strand, within LRK53_RS00090at 28.197 kb on + strand, within LRK53_RS00090at 28.197 kb on + strand, within LRK53_RS00090at 28.197 kb on + strand, within LRK53_RS00090at 28.197 kb on + strand, within LRK53_RS00090at 28.198 kb on - strand, within LRK53_RS00090at 28.198 kb on - strand, within LRK53_RS00090at 28.198 kb on - strand, within LRK53_RS00090at 28.263 kb on + strand, within LRK53_RS00090at 28.263 kb on + strand, within LRK53_RS00090at 28.264 kb on - strand, within LRK53_RS00090at 28.362 kb on + strandat 28.606 kb on + strandat 28.606 kb on + strandat 28.606 kb on + strandat 28.606 kb on + strandat 28.606 kb on + strandat 28.606 kb on + strandat 28.606 kb on + strandat 28.606 kb on + strandat 28.607 kb on - strandat 28.607 kb on - strandat 28.607 kb on - strandat 28.607 kb on - strandat 28.607 kb on - strandat 28.607 kb on - strandat 28.732 kb on + strandat 28.733 kb on - strandat 28.984 kb on + strand, within LRK53_RS00095at 28.985 kb on - strand, within LRK53_RS00095at 28.985 kb on - strand, within LRK53_RS00095at 28.985 kb on - strand, within LRK53_RS00095at 29.344 kb on + strand, within LRK53_RS00095at 29.344 kb on + strand, within LRK53_RS00095at 29.344 kb on + strand, within LRK53_RS00095at 29.344 kb on + strand, within LRK53_RS00095at 29.345 kb on - strand, within LRK53_RS00095at 29.345 kb on - strand, within LRK53_RS00095at 29.345 kb on - strand, within LRK53_RS00095at 29.345 kb on - strand, within LRK53_RS00095at 29.810 kb on - strand, within LRK53_RS00095at 29.917 kb on + strand, within LRK53_RS00095at 29.917 kb on + strand, within LRK53_RS00095at 30.001 kb on + strand, within LRK53_RS00095at 30.001 kb on + strand, within LRK53_RS00095at 30.001 kb on + strand, within LRK53_RS00095at 30.001 kb on + strand, within LRK53_RS00095at 30.001 kb on + strand, within LRK53_RS00095at 30.001 kb on + strand, within LRK53_RS00095at 30.001 kb on + strand, within LRK53_RS00095at 30.002 kb on - strand, within LRK53_RS00095at 30.002 kb on - strand, within LRK53_RS00095at 30.002 kb on - strand, within LRK53_RS00095at 30.002 kb on - strand, within LRK53_RS00095at 30.002 kb on - strand, within LRK53_RS00095at 30.002 kb on - strand, within LRK53_RS00095at 30.002 kb on - strand, within LRK53_RS00095at 30.002 kb on - strand, within LRK53_RS00095at 30.002 kb on - strand, within LRK53_RS00095at 30.007 kb on + strand, within LRK53_RS00095at 30.007 kb on + strand, within LRK53_RS00095at 30.008 kb on - strand, within LRK53_RS00095at 30.127 kb on + strandat 30.127 kb on + strandat 30.127 kb on + strandat 30.127 kb on + strandat 30.128 kb on - strandat 30.148 kb on + strandat 30.148 kb on + strandat 30.149 kb on - strandat 30.149 kb on - strandat 30.149 kb on - strandat 30.151 kb on + strandat 30.152 kb on - strandat 30.152 kb on - strandat 30.152 kb on - strandat 30.152 kb on - strandat 30.152 kb on - strandat 30.166 kb on + strandat 30.220 kb on + strandat 30.220 kb on + strandat 30.220 kb on + strandat 30.221 kb on - strandat 30.221 kb on - strandat 30.221 kb on - strandat 30.221 kb on - strandat 30.221 kb on - strandat 30.221 kb on - strandat 30.260 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction biofilm; Day4; SGW; Aluminum chloride 1mM
remove
27,588 + LRK53_RS00090 0.48 -0.6
27,588 + LRK53_RS00090 0.48 +1.0
27,603 + LRK53_RS00090 0.49 +0.5
27,603 + LRK53_RS00090 0.49 +0.7
27,603 + LRK53_RS00090 0.49 -0.4
27,612 + LRK53_RS00090 0.49 -2.5
27,612 + LRK53_RS00090 0.49 -0.9
27,612 + LRK53_RS00090 0.49 +0.9
27,612 + LRK53_RS00090 0.49 +0.4
27,612 + LRK53_RS00090 0.49 -1.1
27,612 + LRK53_RS00090 0.49 -2.0
27,612 + LRK53_RS00090 0.49 -0.5
27,612 + LRK53_RS00090 0.49 -1.0
27,612 + LRK53_RS00090 0.49 -0.7
27,612 + LRK53_RS00090 0.49 -0.1
27,612 + LRK53_RS00090 0.49 +1.6
27,612 + LRK53_RS00090 0.49 -0.7
27,612 + LRK53_RS00090 0.49 -3.2
27,612 + LRK53_RS00090 0.49 -0.3
27,612 + LRK53_RS00090 0.49 -1.0
27,612 + LRK53_RS00090 0.49 +1.7
27,612 + LRK53_RS00090 0.49 +0.6
27,613 - LRK53_RS00090 0.49 -0.8
27,613 - LRK53_RS00090 0.49 +0.9
27,613 - LRK53_RS00090 0.49 -0.1
27,613 - LRK53_RS00090 0.49 -0.1
27,613 - LRK53_RS00090 0.49 +0.0
27,613 - LRK53_RS00090 0.49 +0.7
27,613 - LRK53_RS00090 0.49 -0.3
27,613 - LRK53_RS00090 0.49 +0.6
27,613 - LRK53_RS00090 0.49 -1.8
27,613 - LRK53_RS00090 0.49 +2.3
27,613 - LRK53_RS00090 0.49 -1.6
27,613 - LRK53_RS00090 0.49 -1.6
27,613 - LRK53_RS00090 0.49 -1.1
27,613 - LRK53_RS00090 0.49 -1.1
27,735 - LRK53_RS00090 0.57 -0.3
27,777 + LRK53_RS00090 0.59 +0.6
27,777 + LRK53_RS00090 0.59 -0.3
27,778 - LRK53_RS00090 0.59 -2.2
27,778 - LRK53_RS00090 0.59 -0.9
27,778 - LRK53_RS00090 0.59 +1.7
27,778 - LRK53_RS00090 0.59 +1.5
27,778 - LRK53_RS00090 0.59 +0.3
27,778 - LRK53_RS00090 0.59 -1.4
27,778 - LRK53_RS00090 0.59 -1.6
27,942 + LRK53_RS00090 0.69 -1.2
27,942 + LRK53_RS00090 0.69 +0.7
27,942 + LRK53_RS00090 0.69 +0.2
27,942 + LRK53_RS00090 0.69 -1.4
27,942 + LRK53_RS00090 0.69 -0.7
27,942 + LRK53_RS00090 0.69 +0.1
27,942 + LRK53_RS00090 0.69 -0.1
27,942 + LRK53_RS00090 0.69 -0.8
27,943 - LRK53_RS00090 0.69 -0.5
27,943 - LRK53_RS00090 0.69 -0.6
27,943 - LRK53_RS00090 0.69 -1.8
27,943 - LRK53_RS00090 0.69 -2.7
27,943 - LRK53_RS00090 0.69 +0.5
27,967 - LRK53_RS00090 0.70 -0.5
27,967 - LRK53_RS00090 0.70 -0.1
27,967 - LRK53_RS00090 0.70 +0.0
28,197 + LRK53_RS00090 0.84 -0.7
28,197 + LRK53_RS00090 0.84 -0.3
28,197 + LRK53_RS00090 0.84 -2.4
28,197 + LRK53_RS00090 0.84 +0.0
28,197 + LRK53_RS00090 0.84 -1.9
28,197 + LRK53_RS00090 0.84 +0.2
28,197 + LRK53_RS00090 0.84 -1.2
28,197 + LRK53_RS00090 0.84 -0.8
28,197 + LRK53_RS00090 0.84 +1.0
28,198 - LRK53_RS00090 0.84 +0.3
28,198 - LRK53_RS00090 0.84 -1.8
28,198 - LRK53_RS00090 0.84 +0.0
28,263 + LRK53_RS00090 0.88 +0.7
28,263 + LRK53_RS00090 0.88 -0.3
28,264 - LRK53_RS00090 0.88 -0.4
28,362 + +0.0
28,606 + +0.9
28,606 + -1.1
28,606 + -1.2
28,606 + -0.0
28,606 + +0.6
28,606 + +0.2
28,606 + -1.3
28,606 + +1.5
28,607 - -0.2
28,607 - +0.0
28,607 - +0.6
28,607 - -1.3
28,607 - -2.2
28,607 - +0.6
28,732 + +0.6
28,733 - -0.3
28,984 + LRK53_RS00095 0.24 -0.3
28,985 - LRK53_RS00095 0.24 +0.6
28,985 - LRK53_RS00095 0.24 -0.8
28,985 - LRK53_RS00095 0.24 +0.2
29,344 + LRK53_RS00095 0.45 -0.0
29,344 + LRK53_RS00095 0.45 +0.0
29,344 + LRK53_RS00095 0.45 +0.3
29,344 + LRK53_RS00095 0.45 -0.6
29,345 - LRK53_RS00095 0.45 +0.0
29,345 - LRK53_RS00095 0.45 +0.0
29,345 - LRK53_RS00095 0.45 +0.2
29,345 - LRK53_RS00095 0.45 -1.7
29,810 - LRK53_RS00095 0.73 -1.1
29,917 + LRK53_RS00095 0.79 -0.0
29,917 + LRK53_RS00095 0.79 -2.4
30,001 + LRK53_RS00095 0.84 +0.6
30,001 + LRK53_RS00095 0.84 -0.1
30,001 + LRK53_RS00095 0.84 -0.7
30,001 + LRK53_RS00095 0.84 -0.2
30,001 + LRK53_RS00095 0.84 +0.0
30,001 + LRK53_RS00095 0.84 -0.7
30,001 + LRK53_RS00095 0.84 +0.5
30,002 - LRK53_RS00095 0.84 -0.9
30,002 - LRK53_RS00095 0.84 -0.8
30,002 - LRK53_RS00095 0.84 -0.1
30,002 - LRK53_RS00095 0.84 -1.4
30,002 - LRK53_RS00095 0.84 -1.0
30,002 - LRK53_RS00095 0.84 +0.1
30,002 - LRK53_RS00095 0.84 -0.5
30,002 - LRK53_RS00095 0.84 -0.8
30,002 - LRK53_RS00095 0.84 -2.1
30,007 + LRK53_RS00095 0.85 -0.3
30,007 + LRK53_RS00095 0.85 -0.5
30,008 - LRK53_RS00095 0.85 -2.4
30,127 + +0.6
30,127 + +0.0
30,127 + -1.3
30,127 + +0.0
30,128 - +0.6
30,148 + +0.4
30,148 + -0.9
30,149 - -0.2
30,149 - +0.8
30,149 - -0.5
30,151 + -0.6
30,152 - -0.4
30,152 - +1.0
30,152 - +0.5
30,152 - -0.5
30,152 - +0.5
30,166 + +0.0
30,220 + +0.0
30,220 + +0.0
30,220 + +1.2
30,221 - +0.3
30,221 - +1.6
30,221 - -1.5
30,221 - +0.2
30,221 - -2.3
30,221 - +0.3
30,260 - -0.2

Or see this region's nucleotide sequence