Experiment: Motility_outer_sample_with_outgrowth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS44405 and QEN71_RS44410 are separated by 106 nucleotides QEN71_RS44410 and QEN71_RS44415 are separated by 192 nucleotides QEN71_RS44415 and QEN71_RS44420 are separated by 104 nucleotides
QEN71_RS44405: QEN71_RS44405 - IS5 family transposase, at 355,209 to 356,015
_RS44405
QEN71_RS44410: QEN71_RS44410 - group II intron maturase-specific domain-containing protein, at 356,122 to 356,490
_RS44410
QEN71_RS44415: QEN71_RS44415 - transposase, at 356,683 to 357,028
_RS44415
QEN71_RS44420: QEN71_RS44420 - hypothetical protein, at 357,133 to 357,455
_RS44420
Position (kb) 356
357
358 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 356.013 kb on + strand at 356.014 kb on - strand at 356.024 kb on - strand at 356.059 kb on + strand at 356.059 kb on + strand at 356.085 kb on + strand at 356.155 kb on + strand at 356.157 kb on + strand at 356.235 kb on - strand, within QEN71_RS44410 at 356.246 kb on + strand, within QEN71_RS44410 at 356.247 kb on - strand, within QEN71_RS44410 at 356.284 kb on + strand, within QEN71_RS44410 at 356.284 kb on + strand, within QEN71_RS44410 at 356.284 kb on + strand, within QEN71_RS44410 at 356.284 kb on + strand, within QEN71_RS44410 at 356.284 kb on + strand, within QEN71_RS44410 at 356.406 kb on + strand, within QEN71_RS44410 at 356.407 kb on - strand, within QEN71_RS44410 at 356.420 kb on - strand, within QEN71_RS44410 at 356.491 kb on + strand at 356.491 kb on + strand at 356.491 kb on + strand at 356.491 kb on + strand at 356.491 kb on + strand at 356.492 kb on - strand at 356.492 kb on - strand at 356.501 kb on - strand at 356.531 kb on + strand at 356.531 kb on + strand at 356.531 kb on + strand at 356.532 kb on - strand at 356.532 kb on - strand at 356.668 kb on - strand at 356.803 kb on + strand, within QEN71_RS44415 at 356.803 kb on + strand, within QEN71_RS44415 at 356.803 kb on + strand, within QEN71_RS44415 at 356.803 kb on + strand, within QEN71_RS44415 at 356.803 kb on + strand, within QEN71_RS44415 at 356.803 kb on + strand, within QEN71_RS44415 at 356.804 kb on - strand, within QEN71_RS44415 at 356.804 kb on - strand, within QEN71_RS44415 at 356.804 kb on - strand, within QEN71_RS44415 at 356.804 kb on - strand, within QEN71_RS44415 at 356.958 kb on + strand, within QEN71_RS44415 at 356.958 kb on + strand, within QEN71_RS44415 at 356.958 kb on + strand, within QEN71_RS44415 at 356.958 kb on + strand, within QEN71_RS44415 at 356.958 kb on + strand, within QEN71_RS44415 at 356.959 kb on - strand, within QEN71_RS44415 at 356.959 kb on - strand, within QEN71_RS44415 at 356.959 kb on - strand, within QEN71_RS44415 at 356.974 kb on + strand, within QEN71_RS44415 at 356.994 kb on - strand at 357.057 kb on + strand at 357.058 kb on - strand at 357.058 kb on - strand at 357.064 kb on - strand at 357.087 kb on - strand at 357.107 kb on - strand at 357.107 kb on - strand at 357.129 kb on + strand at 357.129 kb on + strand at 357.129 kb on + strand at 357.129 kb on + strand at 357.130 kb on - strand at 357.130 kb on - strand at 357.130 kb on - strand at 357.260 kb on + strand, within QEN71_RS44420 at 357.261 kb on - strand, within QEN71_RS44420 at 357.392 kb on + strand, within QEN71_RS44420 at 357.393 kb on - strand, within QEN71_RS44420 at 357.453 kb on - strand at 357.453 kb on - strand at 357.600 kb on + strand at 357.657 kb on + strand at 357.660 kb on + strand at 357.660 kb on + strand at 357.661 kb on - strand at 357.661 kb on - strand at 357.691 kb on + strand at 357.691 kb on + strand at 357.691 kb on + strand at 357.691 kb on + strand at 357.692 kb on - strand at 357.692 kb on - strand at 357.692 kb on - strand at 357.692 kb on - strand at 357.695 kb on + strand at 357.695 kb on + strand at 357.696 kb on - strand at 357.696 kb on - strand at 357.755 kb on + strand at 357.756 kb on - strand at 357.756 kb on - strand at 357.756 kb on - strand at 357.757 kb on + strand at 357.757 kb on + strand at 357.757 kb on + strand at 357.757 kb on + strand at 357.757 kb on + strand at 357.757 kb on + strand at 357.757 kb on + strand at 357.757 kb on + strand at 357.758 kb on - strand at 357.758 kb on - strand at 357.758 kb on - strand at 357.758 kb on - strand at 357.758 kb on - strand at 357.758 kb on - strand at 357.758 kb on - strand at 357.758 kb on - strand at 357.758 kb on - strand at 357.829 kb on + strand at 357.830 kb on - strand at 357.830 kb on - strand at 357.830 kb on - strand at 357.891 kb on + strand at 357.892 kb on - strand at 357.892 kb on - strand at 357.894 kb on + strand at 357.960 kb on - strand at 357.960 kb on - strand at 357.991 kb on + strand at 357.991 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Motility_outer_sample_with_outgrowth remove 356,013 + +0.7 356,014 - -0.2 356,024 - +0.6 356,059 + -0.3 356,059 + -2.2 356,085 + +0.3 356,155 + -3.1 356,157 + -0.7 356,235 - QEN71_RS44410 0.31 -0.3 356,246 + QEN71_RS44410 0.34 +0.4 356,247 - QEN71_RS44410 0.34 -1.0 356,284 + QEN71_RS44410 0.44 -1.4 356,284 + QEN71_RS44410 0.44 -1.0 356,284 + QEN71_RS44410 0.44 +0.2 356,284 + QEN71_RS44410 0.44 -0.4 356,284 + QEN71_RS44410 0.44 -0.7 356,406 + QEN71_RS44410 0.77 -1.2 356,407 - QEN71_RS44410 0.77 +0.3 356,420 - QEN71_RS44410 0.81 +2.7 356,491 + +0.2 356,491 + -0.8 356,491 + -1.1 356,491 + -0.3 356,491 + -0.7 356,492 - +0.1 356,492 - -0.7 356,501 - +1.4 356,531 + +0.6 356,531 + -0.3 356,531 + +0.1 356,532 - -0.2 356,532 - -0.4 356,668 - +0.1 356,803 + QEN71_RS44415 0.35 -0.6 356,803 + QEN71_RS44415 0.35 -0.2 356,803 + QEN71_RS44415 0.35 +0.4 356,803 + QEN71_RS44415 0.35 +0.1 356,803 + QEN71_RS44415 0.35 -0.1 356,803 + QEN71_RS44415 0.35 +0.5 356,804 - QEN71_RS44415 0.35 -1.7 356,804 - QEN71_RS44415 0.35 -0.5 356,804 - QEN71_RS44415 0.35 +0.2 356,804 - QEN71_RS44415 0.35 +0.9 356,958 + QEN71_RS44415 0.79 +1.5 356,958 + QEN71_RS44415 0.79 -0.5 356,958 + QEN71_RS44415 0.79 -0.6 356,958 + QEN71_RS44415 0.79 +0.4 356,958 + QEN71_RS44415 0.79 -0.9 356,959 - QEN71_RS44415 0.80 +1.0 356,959 - QEN71_RS44415 0.80 -1.2 356,959 - QEN71_RS44415 0.80 -0.5 356,974 + QEN71_RS44415 0.84 -2.0 356,994 - +0.5 357,057 + +0.3 357,058 - -1.2 357,058 - -1.7 357,064 - -0.2 357,087 - +1.4 357,107 - -0.3 357,107 - +1.3 357,129 + -0.5 357,129 + -0.3 357,129 + -0.4 357,129 + -0.3 357,130 - -0.2 357,130 - -0.3 357,130 - +0.6 357,260 + QEN71_RS44420 0.39 +1.1 357,261 - QEN71_RS44420 0.40 -0.2 357,392 + QEN71_RS44420 0.80 -1.1 357,393 - QEN71_RS44420 0.80 -0.8 357,453 - +0.8 357,453 - -1.0 357,600 + -3.2 357,657 + +0.9 357,660 + +0.3 357,660 + -0.2 357,661 - +0.3 357,661 - +0.5 357,691 + -1.7 357,691 + -1.2 357,691 + +0.1 357,691 + +0.2 357,692 - -1.0 357,692 - +1.4 357,692 - -0.2 357,692 - -0.6 357,695 + +2.1 357,695 + -0.1 357,696 - -0.6 357,696 - -0.4 357,755 + -0.9 357,756 - -1.5 357,756 - -0.1 357,756 - -0.7 357,757 + +1.1 357,757 + -0.2 357,757 + +0.3 357,757 + -0.7 357,757 + -0.1 357,757 + -0.3 357,757 + -0.5 357,757 + -0.4 357,758 - -0.2 357,758 - -0.1 357,758 - -0.0 357,758 - -1.2 357,758 - -2.0 357,758 - -0.8 357,758 - +0.2 357,758 - +0.3 357,758 - -1.6 357,829 + -0.5 357,830 - -0.2 357,830 - -0.6 357,830 - -0.2 357,891 + -0.2 357,892 - +0.5 357,892 - -0.1 357,894 + -0.2 357,960 - +0.1 357,960 - +0.2 357,991 + -2.0 357,991 + +0.6
Or see this region's nucleotide sequence