Experiment: Motility_outer_sample_with_outgrowth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS42770 and QEN71_RS42775 are separated by 8 nucleotides QEN71_RS42775 and QEN71_RS42780 are separated by 27 nucleotides QEN71_RS42780 and QEN71_RS42785 overlap by 1 nucleotides
QEN71_RS42770: QEN71_RS42770 - site-specific integrase, at 32,832 to 33,710
_RS42770
QEN71_RS42775: QEN71_RS42775 - transposase zinc-binding domain-containing protein, at 33,719 to 33,976
_RS42775
QEN71_RS42780: QEN71_RS42780 - transposase, at 34,004 to 34,546
_RS42780
QEN71_RS42785: QEN71_RS42785 - IS66 family insertion sequence element accessory protein TnpB, at 34,546 to 34,899
_RS42785
Position (kb) 33
34 Strain fitness (log2 ratio) -2
-1
0
1 at 32.769 kb on + strand at 32.991 kb on + strand, within QEN71_RS42770 at 32.992 kb on - strand, within QEN71_RS42770 at 33.409 kb on + strand, within QEN71_RS42770 at 33.841 kb on + strand, within QEN71_RS42775 at 33.902 kb on + strand, within QEN71_RS42775 at 33.971 kb on - strand at 33.978 kb on - strand at 34.055 kb on - strand at 34.065 kb on + strand, within QEN71_RS42780 at 34.065 kb on + strand, within QEN71_RS42780 at 34.066 kb on - strand, within QEN71_RS42780 at 34.066 kb on - strand, within QEN71_RS42780 at 34.255 kb on + strand, within QEN71_RS42780 at 34.489 kb on + strand, within QEN71_RS42780 at 34.489 kb on + strand, within QEN71_RS42780 at 34.489 kb on + strand, within QEN71_RS42780 at 34.489 kb on + strand, within QEN71_RS42780 at 34.490 kb on - strand, within QEN71_RS42780 at 34.490 kb on - strand, within QEN71_RS42780 at 34.490 kb on - strand, within QEN71_RS42780 at 34.576 kb on + strand at 34.576 kb on + strand at 34.617 kb on + strand, within QEN71_RS42785 at 34.617 kb on + strand, within QEN71_RS42785 at 34.693 kb on - strand, within QEN71_RS42785 at 34.693 kb on - strand, within QEN71_RS42785 at 34.693 kb on - strand, within QEN71_RS42785 at 34.693 kb on - strand, within QEN71_RS42785 at 34.721 kb on - strand, within QEN71_RS42785 at 34.882 kb on + strand at 34.883 kb on - strand at 34.897 kb on + strand at 34.905 kb on + strand at 34.916 kb on + strand at 34.950 kb on - strand at 34.950 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Motility_outer_sample_with_outgrowth remove 32,769 + +0.3 32,991 + QEN71_RS42770 0.18 -1.1 32,992 - QEN71_RS42770 0.18 -0.9 33,409 + QEN71_RS42770 0.66 -0.4 33,841 + QEN71_RS42775 0.47 -0.3 33,902 + QEN71_RS42775 0.71 -0.9 33,971 - +0.9 33,978 - -0.9 34,055 - -1.0 34,065 + QEN71_RS42780 0.11 -0.8 34,065 + QEN71_RS42780 0.11 +0.5 34,066 - QEN71_RS42780 0.11 -2.7 34,066 - QEN71_RS42780 0.11 +0.7 34,255 + QEN71_RS42780 0.46 -0.7 34,489 + QEN71_RS42780 0.89 +0.1 34,489 + QEN71_RS42780 0.89 -0.2 34,489 + QEN71_RS42780 0.89 +0.1 34,489 + QEN71_RS42780 0.89 -0.1 34,490 - QEN71_RS42780 0.90 -1.0 34,490 - QEN71_RS42780 0.90 -1.3 34,490 - QEN71_RS42780 0.90 -2.2 34,576 + +0.4 34,576 + -1.3 34,617 + QEN71_RS42785 0.20 +0.3 34,617 + QEN71_RS42785 0.20 -0.3 34,693 - QEN71_RS42785 0.42 -0.3 34,693 - QEN71_RS42785 0.42 -0.9 34,693 - QEN71_RS42785 0.42 -1.1 34,693 - QEN71_RS42785 0.42 -0.3 34,721 - QEN71_RS42785 0.49 +0.9 34,882 + -0.9 34,883 - +0.4 34,897 + -0.5 34,905 + -0.3 34,916 + -0.0 34,950 - -1.2 34,950 - -0.9
Or see this region's nucleotide sequence