Experiment: Motility_outer_sample_with_outgrowth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS32785 and QEN71_RS32790 overlap by 22 nucleotides QEN71_RS32790 and QEN71_RS32795 are separated by 18 nucleotides QEN71_RS32795 and QEN71_RS32800 are separated by 323 nucleotides QEN71_RS32800 and QEN71_RS32805 are separated by 35 nucleotides
QEN71_RS32785: QEN71_RS32785 - DUF6513 domain-containing protein, at 687,483 to 688,862
_RS32785
QEN71_RS32790: QEN71_RS32790 - flavoprotein, at 688,841 to 689,440
_RS32790
QEN71_RS32795: QEN71_RS32795 - sigma-54-dependent Fis family transcriptional regulator, at 689,459 to 691,564
_RS32795
QEN71_RS32800: QEN71_RS32800 - dihydroneopterin aldolase, at 691,888 to 692,367
_RS32800
QEN71_RS32805: QEN71_RS32805 - hypothetical protein, at 692,403 to 692,819
_RS32805
Position (kb) 689
690
691
692 Strain fitness (log2 ratio) -1
0
1
2 at 688.484 kb on + strand, within QEN71_RS32785 at 688.484 kb on + strand, within QEN71_RS32785 at 688.484 kb on + strand, within QEN71_RS32785 at 688.484 kb on + strand, within QEN71_RS32785 at 688.485 kb on - strand, within QEN71_RS32785 at 689.086 kb on - strand, within QEN71_RS32790 at 689.105 kb on - strand, within QEN71_RS32790 at 689.137 kb on + strand, within QEN71_RS32790 at 689.138 kb on - strand, within QEN71_RS32790 at 689.172 kb on + strand, within QEN71_RS32790 at 689.173 kb on - strand, within QEN71_RS32790 at 689.173 kb on - strand, within QEN71_RS32790 at 689.173 kb on - strand, within QEN71_RS32790 at 689.173 kb on - strand, within QEN71_RS32790 at 689.268 kb on + strand, within QEN71_RS32790 at 689.269 kb on - strand, within QEN71_RS32790 at 689.449 kb on + strand at 689.450 kb on - strand at 689.450 kb on - strand at 689.865 kb on + strand, within QEN71_RS32795 at 689.865 kb on + strand, within QEN71_RS32795 at 689.865 kb on + strand, within QEN71_RS32795 at 689.865 kb on + strand, within QEN71_RS32795 at 690.006 kb on + strand, within QEN71_RS32795 at 690.009 kb on + strand, within QEN71_RS32795 at 690.009 kb on + strand, within QEN71_RS32795 at 690.010 kb on - strand, within QEN71_RS32795 at 690.010 kb on - strand, within QEN71_RS32795 at 690.010 kb on - strand, within QEN71_RS32795 at 690.172 kb on + strand, within QEN71_RS32795 at 690.691 kb on - strand, within QEN71_RS32795 at 690.691 kb on - strand, within QEN71_RS32795 at 690.691 kb on - strand, within QEN71_RS32795 at 690.691 kb on - strand, within QEN71_RS32795 at 691.093 kb on + strand, within QEN71_RS32795 at 691.093 kb on + strand, within QEN71_RS32795 at 691.093 kb on + strand, within QEN71_RS32795 at 691.093 kb on + strand, within QEN71_RS32795 at 691.094 kb on - strand, within QEN71_RS32795 at 691.094 kb on - strand, within QEN71_RS32795 at 691.094 kb on - strand, within QEN71_RS32795 at 691.094 kb on - strand, within QEN71_RS32795 at 691.094 kb on - strand, within QEN71_RS32795 at 691.094 kb on - strand, within QEN71_RS32795 at 691.094 kb on - strand, within QEN71_RS32795 at 691.094 kb on - strand, within QEN71_RS32795 at 691.122 kb on + strand, within QEN71_RS32795 at 691.123 kb on - strand, within QEN71_RS32795 at 691.123 kb on - strand, within QEN71_RS32795 at 691.172 kb on - strand, within QEN71_RS32795 at 691.523 kb on + strand at 691.523 kb on + strand at 691.524 kb on - strand at 691.565 kb on + strand at 691.623 kb on + strand at 691.623 kb on + strand at 691.624 kb on - strand at 691.630 kb on + strand at 691.630 kb on + strand at 691.631 kb on - strand at 691.631 kb on - strand at 691.631 kb on - strand at 691.631 kb on - strand at 691.634 kb on + strand at 691.634 kb on + strand at 691.635 kb on - strand at 691.635 kb on - strand at 691.661 kb on - strand at 691.702 kb on + strand at 691.703 kb on - strand at 691.743 kb on + strand at 691.743 kb on + strand at 691.743 kb on + strand at 691.744 kb on - strand at 691.744 kb on - strand at 691.744 kb on - strand at 691.760 kb on + strand at 691.760 kb on + strand at 691.768 kb on + strand at 691.768 kb on + strand at 691.769 kb on - strand at 691.773 kb on - strand at 691.779 kb on - strand at 691.779 kb on - strand at 691.885 kb on + strand at 691.885 kb on + strand at 691.885 kb on + strand at 691.885 kb on + strand at 691.886 kb on - strand at 691.926 kb on + strand at 691.927 kb on - strand at 692.017 kb on + strand, within QEN71_RS32800 at 692.018 kb on - strand, within QEN71_RS32800 at 692.369 kb on + strand at 692.473 kb on + strand, within QEN71_RS32805 at 692.543 kb on - strand, within QEN71_RS32805
Per-strain Table
Position Strand Gene LocusTag Fraction Motility_outer_sample_with_outgrowth remove 688,484 + QEN71_RS32785 0.73 -0.9 688,484 + QEN71_RS32785 0.73 -1.4 688,484 + QEN71_RS32785 0.73 +0.7 688,484 + QEN71_RS32785 0.73 -0.6 688,485 - QEN71_RS32785 0.73 +0.2 689,086 - QEN71_RS32790 0.41 +1.1 689,105 - QEN71_RS32790 0.44 -1.0 689,137 + QEN71_RS32790 0.49 -0.9 689,138 - QEN71_RS32790 0.49 -0.7 689,172 + QEN71_RS32790 0.55 +0.1 689,173 - QEN71_RS32790 0.55 -0.5 689,173 - QEN71_RS32790 0.55 -1.0 689,173 - QEN71_RS32790 0.55 +0.5 689,173 - QEN71_RS32790 0.55 -0.4 689,268 + QEN71_RS32790 0.71 -1.5 689,269 - QEN71_RS32790 0.71 +1.6 689,449 + -0.3 689,450 - -0.3 689,450 - -0.7 689,865 + QEN71_RS32795 0.19 +0.1 689,865 + QEN71_RS32795 0.19 -0.5 689,865 + QEN71_RS32795 0.19 +0.2 689,865 + QEN71_RS32795 0.19 -0.1 690,006 + QEN71_RS32795 0.26 +0.3 690,009 + QEN71_RS32795 0.26 +0.1 690,009 + QEN71_RS32795 0.26 +0.7 690,010 - QEN71_RS32795 0.26 +0.0 690,010 - QEN71_RS32795 0.26 -1.3 690,010 - QEN71_RS32795 0.26 -0.5 690,172 + QEN71_RS32795 0.34 +0.8 690,691 - QEN71_RS32795 0.58 +0.6 690,691 - QEN71_RS32795 0.58 +0.0 690,691 - QEN71_RS32795 0.58 +0.8 690,691 - QEN71_RS32795 0.58 -0.5 691,093 + QEN71_RS32795 0.78 +0.0 691,093 + QEN71_RS32795 0.78 +0.1 691,093 + QEN71_RS32795 0.78 +0.7 691,093 + QEN71_RS32795 0.78 +0.1 691,094 - QEN71_RS32795 0.78 +0.1 691,094 - QEN71_RS32795 0.78 -0.1 691,094 - QEN71_RS32795 0.78 -0.8 691,094 - QEN71_RS32795 0.78 +0.8 691,094 - QEN71_RS32795 0.78 +0.3 691,094 - QEN71_RS32795 0.78 -0.4 691,094 - QEN71_RS32795 0.78 -1.0 691,094 - QEN71_RS32795 0.78 -0.2 691,122 + QEN71_RS32795 0.79 +0.4 691,123 - QEN71_RS32795 0.79 +0.2 691,123 - QEN71_RS32795 0.79 +0.8 691,172 - QEN71_RS32795 0.81 +0.5 691,523 + -0.4 691,523 + -0.9 691,524 - -1.5 691,565 + +0.5 691,623 + +0.0 691,623 + +1.6 691,624 - +0.1 691,630 + +0.2 691,630 + -0.1 691,631 - -0.2 691,631 - -0.7 691,631 - +0.3 691,631 - +1.7 691,634 + +0.1 691,634 + +0.1 691,635 - +0.0 691,635 - -0.2 691,661 - +1.2 691,702 + -1.3 691,703 - -0.5 691,743 + -1.6 691,743 + +2.4 691,743 + -1.4 691,744 - +0.1 691,744 - -0.4 691,744 - +0.1 691,760 + +0.2 691,760 + -0.5 691,768 + +0.1 691,768 + -0.8 691,769 - +0.4 691,773 - +0.2 691,779 - +0.5 691,779 - -0.4 691,885 + +0.4 691,885 + -0.3 691,885 + +1.1 691,885 + +0.1 691,886 - +0.4 691,926 + -0.9 691,927 - +0.0 692,017 + QEN71_RS32800 0.27 +1.1 692,018 - QEN71_RS32800 0.27 -0.1 692,369 + +0.8 692,473 + QEN71_RS32805 0.17 -0.7 692,543 - QEN71_RS32805 0.34 +0.9
Or see this region's nucleotide sequence