Experiment: Motility_outer_sample_with_outgrowth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS32750 and QEN71_RS32755 overlap by 26 nucleotides QEN71_RS32755 and QEN71_RS32760 are separated by 395 nucleotides QEN71_RS32760 and QEN71_RS32765 are separated by 38 nucleotides QEN71_RS32765 and QEN71_RS32770 are separated by 33 nucleotides
QEN71_RS32750: QEN71_RS32750 - hypothetical protein, at 681,161 to 681,463
_RS32750
QEN71_RS32755: QEN71_RS32755 - pyrroloquinoline quinone precursor peptide PqqA, at 681,438 to 681,512
_RS32755
QEN71_RS32760: QEN71_RS32760 - form I ribulose bisphosphate carboxylase large subunit, at 681,908 to 683,398
_RS32760
QEN71_RS32765: QEN71_RS32765 - ribulose bisphosphate carboxylase small subunit, at 683,437 to 683,838
_RS32765
QEN71_RS32770: QEN71_RS32770 - CbbX protein, at 683,872 to 684,840
_RS32770
Position (kb) 681
682
683
684 Strain fitness (log2 ratio) -2
-1
0
1
2 at 681.089 kb on + strand at 681.090 kb on - strand at 681.090 kb on - strand at 681.191 kb on + strand at 681.454 kb on + strand at 681.454 kb on + strand at 681.454 kb on + strand at 681.454 kb on + strand at 681.455 kb on - strand at 681.455 kb on - strand at 681.455 kb on - strand at 681.455 kb on - strand at 681.455 kb on - strand at 681.490 kb on + strand, within QEN71_RS32755 at 681.500 kb on + strand, within QEN71_RS32755 at 681.500 kb on + strand, within QEN71_RS32755 at 681.501 kb on - strand, within QEN71_RS32755 at 681.512 kb on + strand at 681.647 kb on + strand at 681.647 kb on + strand at 681.674 kb on - strand at 681.813 kb on + strand at 681.992 kb on + strand at 682.023 kb on - strand at 682.023 kb on - strand at 682.023 kb on - strand at 682.175 kb on + strand, within QEN71_RS32760 at 682.175 kb on + strand, within QEN71_RS32760 at 682.235 kb on + strand, within QEN71_RS32760 at 682.512 kb on + strand, within QEN71_RS32760 at 682.512 kb on + strand, within QEN71_RS32760 at 682.514 kb on + strand, within QEN71_RS32760 at 682.514 kb on + strand, within QEN71_RS32760 at 682.515 kb on - strand, within QEN71_RS32760 at 682.599 kb on - strand, within QEN71_RS32760 at 682.697 kb on + strand, within QEN71_RS32760 at 682.697 kb on + strand, within QEN71_RS32760 at 682.844 kb on + strand, within QEN71_RS32760 at 682.844 kb on + strand, within QEN71_RS32760 at 682.980 kb on - strand, within QEN71_RS32760 at 683.349 kb on - strand at 683.443 kb on - strand at 683.671 kb on + strand, within QEN71_RS32765 at 683.671 kb on + strand, within QEN71_RS32765 at 683.672 kb on - strand, within QEN71_RS32765 at 683.672 kb on - strand, within QEN71_RS32765 at 684.099 kb on + strand, within QEN71_RS32770 at 684.099 kb on + strand, within QEN71_RS32770 at 684.099 kb on + strand, within QEN71_RS32770 at 684.100 kb on - strand, within QEN71_RS32770 at 684.100 kb on - strand, within QEN71_RS32770 at 684.100 kb on - strand, within QEN71_RS32770 at 684.179 kb on - strand, within QEN71_RS32770 at 684.179 kb on - strand, within QEN71_RS32770 at 684.232 kb on + strand, within QEN71_RS32770 at 684.232 kb on + strand, within QEN71_RS32770 at 684.232 kb on + strand, within QEN71_RS32770 at 684.233 kb on - strand, within QEN71_RS32770 at 684.310 kb on + strand, within QEN71_RS32770 at 684.311 kb on - strand, within QEN71_RS32770 at 684.311 kb on - strand, within QEN71_RS32770 at 684.313 kb on + strand, within QEN71_RS32770 at 684.313 kb on + strand, within QEN71_RS32770 at 684.313 kb on + strand, within QEN71_RS32770 at 684.314 kb on - strand, within QEN71_RS32770 at 684.314 kb on - strand, within QEN71_RS32770 at 684.320 kb on - strand, within QEN71_RS32770 at 684.343 kb on + strand, within QEN71_RS32770
Per-strain Table
Position Strand Gene LocusTag Fraction Motility_outer_sample_with_outgrowth remove 681,089 + -2.1 681,090 - -0.5 681,090 - -0.7 681,191 + +1.1 681,454 + -0.4 681,454 + -0.5 681,454 + -0.4 681,454 + +0.7 681,455 - +1.0 681,455 - -0.4 681,455 - +0.8 681,455 - -0.4 681,455 - +0.6 681,490 + QEN71_RS32755 0.69 -0.2 681,500 + QEN71_RS32755 0.83 -0.9 681,500 + QEN71_RS32755 0.83 -1.0 681,501 - QEN71_RS32755 0.84 +0.1 681,512 + +0.1 681,647 + -0.4 681,647 + +0.2 681,674 - -0.4 681,813 + +0.8 681,992 + +1.1 682,023 - -0.7 682,023 - +1.1 682,023 - +0.4 682,175 + QEN71_RS32760 0.18 +1.3 682,175 + QEN71_RS32760 0.18 +0.1 682,235 + QEN71_RS32760 0.22 +0.1 682,512 + QEN71_RS32760 0.41 -0.9 682,512 + QEN71_RS32760 0.41 +0.7 682,514 + QEN71_RS32760 0.41 -0.3 682,514 + QEN71_RS32760 0.41 -0.5 682,515 - QEN71_RS32760 0.41 -0.3 682,599 - QEN71_RS32760 0.46 +0.5 682,697 + QEN71_RS32760 0.53 -0.3 682,697 + QEN71_RS32760 0.53 -0.6 682,844 + QEN71_RS32760 0.63 -0.3 682,844 + QEN71_RS32760 0.63 +0.8 682,980 - QEN71_RS32760 0.72 -0.5 683,349 - +0.9 683,443 - +0.2 683,671 + QEN71_RS32765 0.58 +0.7 683,671 + QEN71_RS32765 0.58 -0.7 683,672 - QEN71_RS32765 0.58 +0.1 683,672 - QEN71_RS32765 0.58 +2.5 684,099 + QEN71_RS32770 0.23 -0.5 684,099 + QEN71_RS32770 0.23 +0.5 684,099 + QEN71_RS32770 0.23 +0.0 684,100 - QEN71_RS32770 0.24 +0.2 684,100 - QEN71_RS32770 0.24 +0.8 684,100 - QEN71_RS32770 0.24 +0.5 684,179 - QEN71_RS32770 0.32 +0.1 684,179 - QEN71_RS32770 0.32 -0.2 684,232 + QEN71_RS32770 0.37 -0.1 684,232 + QEN71_RS32770 0.37 +0.3 684,232 + QEN71_RS32770 0.37 -0.0 684,233 - QEN71_RS32770 0.37 +0.3 684,310 + QEN71_RS32770 0.45 -0.8 684,311 - QEN71_RS32770 0.45 +0.5 684,311 - QEN71_RS32770 0.45 -0.0 684,313 + QEN71_RS32770 0.46 +0.1 684,313 + QEN71_RS32770 0.46 -0.1 684,313 + QEN71_RS32770 0.46 -0.0 684,314 - QEN71_RS32770 0.46 -1.4 684,314 - QEN71_RS32770 0.46 +0.7 684,320 - QEN71_RS32770 0.46 +0.9 684,343 + QEN71_RS32770 0.49 -0.1
Or see this region's nucleotide sequence