Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS31740

Experiment: Motility_outer_sample_with_outgrowth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS31730 and QEN71_RS31735 are separated by 18 nucleotidesQEN71_RS31735 and QEN71_RS31740 are separated by 10 nucleotidesQEN71_RS31740 and QEN71_RS31745 overlap by 4 nucleotides QEN71_RS31730: QEN71_RS31730 - type VI secretion system protein TssA, at 467,254 to 468,384 _RS31730 QEN71_RS31735: QEN71_RS31735 - OmpA family protein, at 468,403 to 469,317 _RS31735 QEN71_RS31740: QEN71_RS31740 - type VI secretion system-associated protein TagF, at 469,328 to 470,317 _RS31740 QEN71_RS31745: QEN71_RS31745 - type VI secretion system membrane subunit TssM, at 470,314 to 474,171 _RS31745 Position (kb) 469 470 471Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 468.382 kb on + strandat 468.382 kb on + strandat 468.382 kb on + strandat 468.382 kb on + strandat 468.382 kb on + strandat 468.427 kb on - strandat 468.536 kb on + strand, within QEN71_RS31735at 468.536 kb on + strand, within QEN71_RS31735at 468.585 kb on + strand, within QEN71_RS31735at 468.585 kb on + strand, within QEN71_RS31735at 468.586 kb on - strand, within QEN71_RS31735at 468.600 kb on + strand, within QEN71_RS31735at 468.601 kb on - strand, within QEN71_RS31735at 468.645 kb on + strand, within QEN71_RS31735at 468.645 kb on + strand, within QEN71_RS31735at 468.794 kb on + strand, within QEN71_RS31735at 468.794 kb on + strand, within QEN71_RS31735at 468.794 kb on + strand, within QEN71_RS31735at 468.795 kb on - strand, within QEN71_RS31735at 468.795 kb on - strand, within QEN71_RS31735at 468.943 kb on + strand, within QEN71_RS31735at 468.943 kb on + strand, within QEN71_RS31735at 468.944 kb on - strand, within QEN71_RS31735at 468.944 kb on - strand, within QEN71_RS31735at 468.944 kb on - strand, within QEN71_RS31735at 468.944 kb on - strand, within QEN71_RS31735at 468.973 kb on + strand, within QEN71_RS31735at 468.974 kb on - strand, within QEN71_RS31735at 468.974 kb on - strand, within QEN71_RS31735at 468.974 kb on - strand, within QEN71_RS31735at 468.974 kb on - strand, within QEN71_RS31735at 468.974 kb on - strand, within QEN71_RS31735at 469.016 kb on + strand, within QEN71_RS31735at 469.016 kb on + strand, within QEN71_RS31735at 469.016 kb on + strand, within QEN71_RS31735at 469.016 kb on + strand, within QEN71_RS31735at 469.016 kb on + strand, within QEN71_RS31735at 469.017 kb on - strand, within QEN71_RS31735at 469.017 kb on - strand, within QEN71_RS31735at 469.017 kb on - strand, within QEN71_RS31735at 469.017 kb on - strand, within QEN71_RS31735at 469.017 kb on - strand, within QEN71_RS31735at 469.079 kb on - strand, within QEN71_RS31735at 469.084 kb on + strand, within QEN71_RS31735at 469.084 kb on + strand, within QEN71_RS31735at 469.084 kb on + strand, within QEN71_RS31735at 469.085 kb on - strand, within QEN71_RS31735at 469.085 kb on - strand, within QEN71_RS31735at 469.085 kb on - strand, within QEN71_RS31735at 469.085 kb on - strand, within QEN71_RS31735at 469.192 kb on - strand, within QEN71_RS31735at 469.192 kb on - strand, within QEN71_RS31735at 469.329 kb on + strandat 469.329 kb on + strandat 469.329 kb on + strandat 469.330 kb on - strandat 469.330 kb on - strandat 469.330 kb on - strandat 469.330 kb on - strandat 469.330 kb on - strandat 469.374 kb on - strandat 469.398 kb on + strandat 469.399 kb on - strandat 469.399 kb on - strandat 469.399 kb on - strandat 469.399 kb on - strandat 469.399 kb on - strandat 469.485 kb on + strand, within QEN71_RS31740at 469.486 kb on - strand, within QEN71_RS31740at 469.486 kb on - strand, within QEN71_RS31740at 469.486 kb on - strand, within QEN71_RS31740at 469.656 kb on + strand, within QEN71_RS31740at 469.657 kb on - strand, within QEN71_RS31740at 470.086 kb on + strand, within QEN71_RS31740at 470.086 kb on + strand, within QEN71_RS31740at 470.086 kb on + strand, within QEN71_RS31740at 470.087 kb on - strand, within QEN71_RS31740at 470.087 kb on - strand, within QEN71_RS31740at 470.087 kb on - strand, within QEN71_RS31740at 470.087 kb on - strand, within QEN71_RS31740at 470.286 kb on + strandat 470.286 kb on + strandat 470.287 kb on - strandat 470.397 kb on + strandat 470.398 kb on - strandat 470.398 kb on - strandat 470.745 kb on - strand, within QEN71_RS31745at 470.777 kb on + strand, within QEN71_RS31745at 470.777 kb on + strand, within QEN71_RS31745at 470.777 kb on + strand, within QEN71_RS31745at 470.777 kb on + strand, within QEN71_RS31745at 470.777 kb on + strand, within QEN71_RS31745at 470.778 kb on - strand, within QEN71_RS31745at 470.778 kb on - strand, within QEN71_RS31745at 470.778 kb on - strand, within QEN71_RS31745at 470.778 kb on - strand, within QEN71_RS31745at 470.778 kb on - strand, within QEN71_RS31745at 471.083 kb on + strand, within QEN71_RS31745at 471.083 kb on + strand, within QEN71_RS31745at 471.084 kb on - strand, within QEN71_RS31745at 471.084 kb on - strand, within QEN71_RS31745at 471.084 kb on - strand, within QEN71_RS31745at 471.084 kb on - strand, within QEN71_RS31745at 471.084 kb on - strand, within QEN71_RS31745at 471.116 kb on + strand, within QEN71_RS31745at 471.116 kb on + strand, within QEN71_RS31745at 471.116 kb on + strand, within QEN71_RS31745at 471.116 kb on + strand, within QEN71_RS31745at 471.116 kb on + strand, within QEN71_RS31745at 471.117 kb on - strand, within QEN71_RS31745at 471.117 kb on - strand, within QEN71_RS31745at 471.176 kb on + strand, within QEN71_RS31745at 471.176 kb on + strand, within QEN71_RS31745at 471.176 kb on + strand, within QEN71_RS31745at 471.177 kb on - strand, within QEN71_RS31745at 471.177 kb on - strand, within QEN71_RS31745at 471.177 kb on - strand, within QEN71_RS31745at 471.177 kb on - strand, within QEN71_RS31745at 471.177 kb on - strand, within QEN71_RS31745at 471.263 kb on + strand, within QEN71_RS31745at 471.263 kb on + strand, within QEN71_RS31745at 471.264 kb on - strand, within QEN71_RS31745at 471.264 kb on - strand, within QEN71_RS31745

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Per-strain Table

Position Strand Gene LocusTag Fraction Motility_outer_sample_with_outgrowth
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468,382 + +0.1
468,382 + -1.2
468,382 + -0.0
468,382 + -0.3
468,382 + -1.0
468,427 - -1.0
468,536 + QEN71_RS31735 0.15 -0.4
468,536 + QEN71_RS31735 0.15 -0.2
468,585 + QEN71_RS31735 0.20 -0.0
468,585 + QEN71_RS31735 0.20 -0.5
468,586 - QEN71_RS31735 0.20 -0.6
468,600 + QEN71_RS31735 0.22 +0.4
468,601 - QEN71_RS31735 0.22 -0.4
468,645 + QEN71_RS31735 0.26 -0.2
468,645 + QEN71_RS31735 0.26 -0.0
468,794 + QEN71_RS31735 0.43 +0.4
468,794 + QEN71_RS31735 0.43 -0.0
468,794 + QEN71_RS31735 0.43 -0.6
468,795 - QEN71_RS31735 0.43 -0.3
468,795 - QEN71_RS31735 0.43 +0.3
468,943 + QEN71_RS31735 0.59 -0.8
468,943 + QEN71_RS31735 0.59 -0.6
468,944 - QEN71_RS31735 0.59 -1.7
468,944 - QEN71_RS31735 0.59 -1.1
468,944 - QEN71_RS31735 0.59 +0.4
468,944 - QEN71_RS31735 0.59 -0.3
468,973 + QEN71_RS31735 0.62 -1.1
468,974 - QEN71_RS31735 0.62 +0.8
468,974 - QEN71_RS31735 0.62 -0.0
468,974 - QEN71_RS31735 0.62 -0.2
468,974 - QEN71_RS31735 0.62 -0.9
468,974 - QEN71_RS31735 0.62 +1.0
469,016 + QEN71_RS31735 0.67 -0.5
469,016 + QEN71_RS31735 0.67 -0.7
469,016 + QEN71_RS31735 0.67 -0.6
469,016 + QEN71_RS31735 0.67 +1.5
469,016 + QEN71_RS31735 0.67 -0.5
469,017 - QEN71_RS31735 0.67 -0.7
469,017 - QEN71_RS31735 0.67 -0.7
469,017 - QEN71_RS31735 0.67 +0.0
469,017 - QEN71_RS31735 0.67 +1.5
469,017 - QEN71_RS31735 0.67 -0.7
469,079 - QEN71_RS31735 0.74 -0.7
469,084 + QEN71_RS31735 0.74 -2.3
469,084 + QEN71_RS31735 0.74 -2.6
469,084 + QEN71_RS31735 0.74 -0.0
469,085 - QEN71_RS31735 0.75 -0.3
469,085 - QEN71_RS31735 0.75 -0.7
469,085 - QEN71_RS31735 0.75 +0.3
469,085 - QEN71_RS31735 0.75 -0.6
469,192 - QEN71_RS31735 0.86 -0.8
469,192 - QEN71_RS31735 0.86 -0.8
469,329 + -0.2
469,329 + -0.1
469,329 + -0.5
469,330 - -0.3
469,330 - -0.4
469,330 - -0.5
469,330 - -0.2
469,330 - +0.2
469,374 - -3.9
469,398 + -1.4
469,399 - -3.2
469,399 - +1.4
469,399 - -2.7
469,399 - -2.4
469,399 - -1.7
469,485 + QEN71_RS31740 0.16 -4.5
469,486 - QEN71_RS31740 0.16 -1.0
469,486 - QEN71_RS31740 0.16 -3.4
469,486 - QEN71_RS31740 0.16 -0.9
469,656 + QEN71_RS31740 0.33 -2.9
469,657 - QEN71_RS31740 0.33 -0.8
470,086 + QEN71_RS31740 0.77 -2.4
470,086 + QEN71_RS31740 0.77 -2.5
470,086 + QEN71_RS31740 0.77 -2.2
470,087 - QEN71_RS31740 0.77 -1.7
470,087 - QEN71_RS31740 0.77 -1.8
470,087 - QEN71_RS31740 0.77 -0.4
470,087 - QEN71_RS31740 0.77 -1.8
470,286 + -3.9
470,286 + -1.9
470,287 - -0.0
470,397 + -1.5
470,398 - -0.5
470,398 - +0.7
470,745 - QEN71_RS31745 0.11 -0.8
470,777 + QEN71_RS31745 0.12 -1.5
470,777 + QEN71_RS31745 0.12 -1.7
470,777 + QEN71_RS31745 0.12 -1.7
470,777 + QEN71_RS31745 0.12 +0.0
470,777 + QEN71_RS31745 0.12 -1.6
470,778 - QEN71_RS31745 0.12 -1.9
470,778 - QEN71_RS31745 0.12 -0.6
470,778 - QEN71_RS31745 0.12 -1.4
470,778 - QEN71_RS31745 0.12 -0.2
470,778 - QEN71_RS31745 0.12 -0.6
471,083 + QEN71_RS31745 0.20 +0.0
471,083 + QEN71_RS31745 0.20 -0.8
471,084 - QEN71_RS31745 0.20 -0.8
471,084 - QEN71_RS31745 0.20 -0.6
471,084 - QEN71_RS31745 0.20 -1.0
471,084 - QEN71_RS31745 0.20 -2.3
471,084 - QEN71_RS31745 0.20 -0.6
471,116 + QEN71_RS31745 0.21 +0.1
471,116 + QEN71_RS31745 0.21 +0.0
471,116 + QEN71_RS31745 0.21 +0.2
471,116 + QEN71_RS31745 0.21 -1.6
471,116 + QEN71_RS31745 0.21 -0.2
471,117 - QEN71_RS31745 0.21 -0.0
471,117 - QEN71_RS31745 0.21 +0.7
471,176 + QEN71_RS31745 0.22 -0.5
471,176 + QEN71_RS31745 0.22 -0.2
471,176 + QEN71_RS31745 0.22 -1.6
471,177 - QEN71_RS31745 0.22 -0.3
471,177 - QEN71_RS31745 0.22 +0.2
471,177 - QEN71_RS31745 0.22 -0.2
471,177 - QEN71_RS31745 0.22 -0.4
471,177 - QEN71_RS31745 0.22 -1.1
471,263 + QEN71_RS31745 0.25 +0.2
471,263 + QEN71_RS31745 0.25 -0.5
471,264 - QEN71_RS31745 0.25 -0.5
471,264 - QEN71_RS31745 0.25 -1.1

Or see this region's nucleotide sequence