Experiment: Motility_outer_sample_with_outgrowth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS31230 and QEN71_RS31235 are separated by 10 nucleotides QEN71_RS31235 and QEN71_RS31240 overlap by 14 nucleotides
QEN71_RS31230: QEN71_RS31230 - CHAD domain-containing protein, at 356,741 to 357,652
_RS31230
QEN71_RS31235: QEN71_RS31235 - hypothetical protein, at 357,663 to 357,980
_RS31235
QEN71_RS31240: QEN71_RS31240 - acyclic terpene utilization AtuA family protein, at 357,967 to 359,325
_RS31240
Position (kb) 357
358 Strain fitness (log2 ratio) -2
-1
0
1 at 356.981 kb on + strand, within QEN71_RS31230 at 356.981 kb on + strand, within QEN71_RS31230 at 356.981 kb on + strand, within QEN71_RS31230 at 356.982 kb on - strand, within QEN71_RS31230 at 356.982 kb on - strand, within QEN71_RS31230 at 356.990 kb on + strand, within QEN71_RS31230 at 356.991 kb on - strand, within QEN71_RS31230 at 357.342 kb on + strand, within QEN71_RS31230 at 357.342 kb on + strand, within QEN71_RS31230 at 357.343 kb on - strand, within QEN71_RS31230 at 357.343 kb on - strand, within QEN71_RS31230 at 357.343 kb on - strand, within QEN71_RS31230 at 357.708 kb on - strand, within QEN71_RS31235 at 358.102 kb on - strand at 358.103 kb on + strand, within QEN71_RS31240 at 358.185 kb on - strand, within QEN71_RS31240 at 358.185 kb on - strand, within QEN71_RS31240 at 358.220 kb on + strand, within QEN71_RS31240 at 358.223 kb on - strand, within QEN71_RS31240 at 358.223 kb on - strand, within QEN71_RS31240 at 358.228 kb on - strand, within QEN71_RS31240 at 358.343 kb on + strand, within QEN71_RS31240 at 358.368 kb on - strand, within QEN71_RS31240 at 358.379 kb on + strand, within QEN71_RS31240 at 358.380 kb on - strand, within QEN71_RS31240 at 358.380 kb on - strand, within QEN71_RS31240 at 358.469 kb on - strand, within QEN71_RS31240 at 358.502 kb on + strand, within QEN71_RS31240 at 358.505 kb on + strand, within QEN71_RS31240 at 358.665 kb on - strand, within QEN71_RS31240 at 358.665 kb on - strand, within QEN71_RS31240 at 358.881 kb on - strand, within QEN71_RS31240 at 358.881 kb on - strand, within QEN71_RS31240 at 358.894 kb on + strand, within QEN71_RS31240
Per-strain Table
Position Strand Gene LocusTag Fraction Motility_outer_sample_with_outgrowth remove 356,981 + QEN71_RS31230 0.26 -1.1 356,981 + QEN71_RS31230 0.26 +0.4 356,981 + QEN71_RS31230 0.26 +0.5 356,982 - QEN71_RS31230 0.26 -1.3 356,982 - QEN71_RS31230 0.26 +0.3 356,990 + QEN71_RS31230 0.27 -0.3 356,991 - QEN71_RS31230 0.27 -0.4 357,342 + QEN71_RS31230 0.66 -1.2 357,342 + QEN71_RS31230 0.66 -0.8 357,343 - QEN71_RS31230 0.66 -1.5 357,343 - QEN71_RS31230 0.66 +0.1 357,343 - QEN71_RS31230 0.66 -0.7 357,708 - QEN71_RS31235 0.14 -2.1 358,102 - -0.9 358,103 + QEN71_RS31240 0.10 -0.9 358,185 - QEN71_RS31240 0.16 +0.2 358,185 - QEN71_RS31240 0.16 -0.1 358,220 + QEN71_RS31240 0.19 -1.0 358,223 - QEN71_RS31240 0.19 -1.2 358,223 - QEN71_RS31240 0.19 -1.2 358,228 - QEN71_RS31240 0.19 +0.2 358,343 + QEN71_RS31240 0.28 -1.0 358,368 - QEN71_RS31240 0.30 +0.4 358,379 + QEN71_RS31240 0.30 -0.1 358,380 - QEN71_RS31240 0.30 -1.4 358,380 - QEN71_RS31240 0.30 -0.0 358,469 - QEN71_RS31240 0.37 +0.6 358,502 + QEN71_RS31240 0.39 +1.6 358,505 + QEN71_RS31240 0.40 +0.4 358,665 - QEN71_RS31240 0.51 -1.5 358,665 - QEN71_RS31240 0.51 -0.8 358,881 - QEN71_RS31240 0.67 -0.3 358,881 - QEN71_RS31240 0.67 +1.6 358,894 + QEN71_RS31240 0.68 -1.2
Or see this region's nucleotide sequence