Experiment: Motility_outer_sample_with_outgrowth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS29875 and QEN71_RS29880 are separated by 184 nucleotides QEN71_RS29880 and QEN71_RS29885 overlap by 4 nucleotides QEN71_RS29885 and QEN71_RS29890 are separated by 60 nucleotides QEN71_RS29890 and QEN71_RS29895 are separated by 101 nucleotides
QEN71_RS29875: QEN71_RS29875 - TetR family transcriptional regulator, at 49,772 to 50,407
_RS29875
QEN71_RS29880: QEN71_RS29880 - response regulator, at 50,592 to 51,359
_RS29880
QEN71_RS29885: QEN71_RS29885 - ATP-binding protein, at 51,356 to 52,609
_RS29885
QEN71_RS29890: QEN71_RS29890 - RcnB family protein, at 52,670 to 53,074
_RS29890
QEN71_RS29895: QEN71_RS29895 - hypothetical protein, at 53,176 to 53,838
_RS29895
Position (kb) 51
52
53 Strain fitness (log2 ratio) -2
-1
0
1
2 at 50.474 kb on + strand at 50.474 kb on + strand at 50.511 kb on + strand at 50.511 kb on + strand at 50.511 kb on + strand at 50.511 kb on + strand at 50.511 kb on + strand at 50.511 kb on + strand at 50.512 kb on - strand at 50.518 kb on - strand at 50.898 kb on + strand, within QEN71_RS29880 at 51.091 kb on - strand, within QEN71_RS29880 at 51.283 kb on - strand at 51.283 kb on - strand at 51.283 kb on - strand at 51.284 kb on + strand at 51.285 kb on - strand at 51.285 kb on - strand at 51.373 kb on + strand at 51.569 kb on + strand, within QEN71_RS29885 at 51.569 kb on + strand, within QEN71_RS29885 at 51.569 kb on + strand, within QEN71_RS29885 at 51.569 kb on + strand, within QEN71_RS29885 at 51.569 kb on + strand, within QEN71_RS29885 at 51.570 kb on - strand, within QEN71_RS29885 at 51.570 kb on - strand, within QEN71_RS29885 at 51.711 kb on + strand, within QEN71_RS29885 at 51.712 kb on - strand, within QEN71_RS29885 at 51.712 kb on - strand, within QEN71_RS29885 at 51.740 kb on + strand, within QEN71_RS29885 at 51.740 kb on + strand, within QEN71_RS29885 at 51.740 kb on + strand, within QEN71_RS29885 at 51.740 kb on + strand, within QEN71_RS29885 at 51.740 kb on + strand, within QEN71_RS29885 at 51.741 kb on - strand, within QEN71_RS29885 at 51.741 kb on - strand, within QEN71_RS29885 at 51.741 kb on - strand, within QEN71_RS29885 at 51.741 kb on - strand, within QEN71_RS29885 at 51.741 kb on - strand, within QEN71_RS29885 at 51.741 kb on - strand, within QEN71_RS29885 at 51.741 kb on - strand, within QEN71_RS29885 at 51.741 kb on - strand, within QEN71_RS29885 at 51.741 kb on - strand, within QEN71_RS29885 at 51.742 kb on + strand, within QEN71_RS29885 at 51.742 kb on + strand, within QEN71_RS29885 at 51.743 kb on - strand, within QEN71_RS29885 at 52.148 kb on + strand, within QEN71_RS29885 at 52.334 kb on + strand, within QEN71_RS29885 at 52.383 kb on - strand, within QEN71_RS29885 at 52.529 kb on + strand at 52.810 kb on - strand, within QEN71_RS29890 at 53.002 kb on - strand, within QEN71_RS29890 at 53.061 kb on - strand at 53.061 kb on - strand at 53.061 kb on - strand at 53.074 kb on + strand at 53.091 kb on - strand at 53.134 kb on + strand at 53.135 kb on - strand at 53.144 kb on + strand at 53.393 kb on + strand, within QEN71_RS29895 at 53.467 kb on + strand, within QEN71_RS29895
Per-strain Table
Position Strand Gene LocusTag Fraction Motility_outer_sample_with_outgrowth remove 50,474 + -0.6 50,474 + -0.7 50,511 + +0.6 50,511 + +1.9 50,511 + +0.4 50,511 + +0.4 50,511 + +0.6 50,511 + +1.0 50,512 - -0.0 50,518 - +0.4 50,898 + QEN71_RS29880 0.40 +0.8 51,091 - QEN71_RS29880 0.65 -2.2 51,283 - +0.1 51,283 - +0.1 51,283 - -1.3 51,284 + -0.7 51,285 - +0.8 51,285 - +0.6 51,373 + -0.4 51,569 + QEN71_RS29885 0.17 -0.1 51,569 + QEN71_RS29885 0.17 +0.0 51,569 + QEN71_RS29885 0.17 -0.2 51,569 + QEN71_RS29885 0.17 -0.7 51,569 + QEN71_RS29885 0.17 -0.8 51,570 - QEN71_RS29885 0.17 +0.3 51,570 - QEN71_RS29885 0.17 +0.3 51,711 + QEN71_RS29885 0.28 -1.1 51,712 - QEN71_RS29885 0.28 -1.3 51,712 - QEN71_RS29885 0.28 -0.1 51,740 + QEN71_RS29885 0.31 -1.4 51,740 + QEN71_RS29885 0.31 +0.1 51,740 + QEN71_RS29885 0.31 +0.6 51,740 + QEN71_RS29885 0.31 -0.7 51,740 + QEN71_RS29885 0.31 -0.1 51,741 - QEN71_RS29885 0.31 -0.4 51,741 - QEN71_RS29885 0.31 +1.5 51,741 - QEN71_RS29885 0.31 -0.0 51,741 - QEN71_RS29885 0.31 -0.2 51,741 - QEN71_RS29885 0.31 -1.6 51,741 - QEN71_RS29885 0.31 -0.7 51,741 - QEN71_RS29885 0.31 -0.4 51,741 - QEN71_RS29885 0.31 -0.4 51,741 - QEN71_RS29885 0.31 -0.3 51,742 + QEN71_RS29885 0.31 -1.8 51,742 + QEN71_RS29885 0.31 -0.5 51,743 - QEN71_RS29885 0.31 +0.5 52,148 + QEN71_RS29885 0.63 +0.9 52,334 + QEN71_RS29885 0.78 -0.4 52,383 - QEN71_RS29885 0.82 +1.0 52,529 + +0.4 52,810 - QEN71_RS29890 0.35 -0.1 53,002 - QEN71_RS29890 0.82 +0.5 53,061 - -0.1 53,061 - -2.4 53,061 - -1.6 53,074 + -0.8 53,091 - +0.7 53,134 + +1.2 53,135 - +0.7 53,144 + -0.7 53,393 + QEN71_RS29895 0.33 -0.3 53,467 + QEN71_RS29895 0.44 -0.1
Or see this region's nucleotide sequence