Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS28885

Experiment: Motility_outer_sample_with_outgrowth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS28880 and QEN71_RS28885 are separated by 12 nucleotidesQEN71_RS28885 and QEN71_RS28890 are separated by 2 nucleotidesQEN71_RS28890 and QEN71_RS28895 are separated by 35 nucleotides QEN71_RS28880: QEN71_RS28880 - flagellar assembly peptidoglycan hydrolase FlgJ, at 6,403,410 to 6,404,342 _RS28880 QEN71_RS28885: QEN71_RS28885 - flagellar basal body P-ring protein FlgI, at 6,404,355 to 6,405,536 _RS28885 QEN71_RS28890: QEN71_RS28890 - flagellar basal body L-ring protein FlgH, at 6,405,539 to 6,406,249 _RS28890 QEN71_RS28895: QEN71_RS28895 - flagellar basal-body rod protein FlgG, at 6,406,285 to 6,407,073 _RS28895 Position (kb) 6404 6405 6406Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 6403.356 kb on - strandat 6403.356 kb on - strandat 6403.356 kb on - strandat 6403.356 kb on - strandat 6403.535 kb on - strand, within QEN71_RS28880at 6403.564 kb on + strand, within QEN71_RS28880at 6403.565 kb on - strand, within QEN71_RS28880at 6403.565 kb on - strand, within QEN71_RS28880at 6403.594 kb on + strand, within QEN71_RS28880at 6403.639 kb on + strand, within QEN71_RS28880at 6403.640 kb on - strand, within QEN71_RS28880at 6403.640 kb on - strand, within QEN71_RS28880at 6403.703 kb on + strand, within QEN71_RS28880at 6403.703 kb on + strand, within QEN71_RS28880at 6403.703 kb on + strand, within QEN71_RS28880at 6403.704 kb on - strand, within QEN71_RS28880at 6403.913 kb on - strand, within QEN71_RS28880at 6403.958 kb on - strand, within QEN71_RS28880at 6404.066 kb on + strand, within QEN71_RS28880at 6404.066 kb on + strand, within QEN71_RS28880at 6404.356 kb on + strandat 6404.356 kb on + strandat 6404.356 kb on + strandat 6404.356 kb on + strandat 6404.357 kb on - strandat 6404.357 kb on - strandat 6404.357 kb on - strandat 6404.357 kb on - strandat 6404.357 kb on - strandat 6404.357 kb on - strandat 6404.869 kb on + strand, within QEN71_RS28885at 6404.870 kb on - strand, within QEN71_RS28885at 6404.870 kb on - strand, within QEN71_RS28885at 6405.029 kb on + strand, within QEN71_RS28885at 6405.029 kb on + strand, within QEN71_RS28885at 6405.030 kb on - strand, within QEN71_RS28885at 6405.049 kb on + strand, within QEN71_RS28885at 6405.049 kb on + strand, within QEN71_RS28885at 6405.049 kb on + strand, within QEN71_RS28885at 6405.050 kb on - strand, within QEN71_RS28885at 6405.531 kb on - strandat 6405.531 kb on - strandat 6405.531 kb on - strandat 6405.601 kb on + strandat 6405.601 kb on + strandat 6405.601 kb on + strandat 6405.601 kb on + strandat 6405.602 kb on - strandat 6405.602 kb on - strandat 6405.602 kb on - strandat 6405.602 kb on - strandat 6405.602 kb on - strandat 6405.602 kb on - strandat 6405.602 kb on - strandat 6405.603 kb on + strandat 6405.603 kb on + strandat 6405.603 kb on + strandat 6405.604 kb on - strandat 6405.604 kb on - strandat 6405.604 kb on - strandat 6405.604 kb on - strandat 6405.604 kb on - strandat 6405.604 kb on - strandat 6405.604 kb on - strandat 6405.604 kb on - strandat 6405.604 kb on - strandat 6405.619 kb on - strand, within QEN71_RS28890at 6405.619 kb on - strand, within QEN71_RS28890at 6405.652 kb on - strand, within QEN71_RS28890at 6405.652 kb on - strand, within QEN71_RS28890at 6405.652 kb on - strand, within QEN71_RS28890at 6405.652 kb on - strand, within QEN71_RS28890at 6405.652 kb on - strand, within QEN71_RS28890at 6406.062 kb on + strand, within QEN71_RS28890at 6406.062 kb on + strand, within QEN71_RS28890at 6406.062 kb on + strand, within QEN71_RS28890at 6406.062 kb on + strand, within QEN71_RS28890at 6406.063 kb on - strand, within QEN71_RS28890at 6406.063 kb on - strand, within QEN71_RS28890at 6406.063 kb on - strand, within QEN71_RS28890at 6406.063 kb on - strand, within QEN71_RS28890at 6406.063 kb on - strand, within QEN71_RS28890at 6406.232 kb on - strandat 6406.278 kb on - strandat 6406.278 kb on - strandat 6406.286 kb on + strandat 6406.286 kb on + strandat 6406.287 kb on - strandat 6406.356 kb on - strandat 6406.421 kb on + strand, within QEN71_RS28895at 6406.421 kb on + strand, within QEN71_RS28895at 6406.422 kb on - strand, within QEN71_RS28895

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Per-strain Table

Position Strand Gene LocusTag Fraction Motility_outer_sample_with_outgrowth
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6,403,356 - -0.1
6,403,356 - -0.4
6,403,356 - +0.5
6,403,356 - +2.0
6,403,535 - QEN71_RS28880 0.13 -2.8
6,403,564 + QEN71_RS28880 0.17 -3.3
6,403,565 - QEN71_RS28880 0.17 -2.2
6,403,565 - QEN71_RS28880 0.17 -1.3
6,403,594 + QEN71_RS28880 0.20 -2.3
6,403,639 + QEN71_RS28880 0.25 -2.5
6,403,640 - QEN71_RS28880 0.25 -1.0
6,403,640 - QEN71_RS28880 0.25 -2.0
6,403,703 + QEN71_RS28880 0.31 -2.7
6,403,703 + QEN71_RS28880 0.31 -3.9
6,403,703 + QEN71_RS28880 0.31 -1.3
6,403,704 - QEN71_RS28880 0.32 +0.0
6,403,913 - QEN71_RS28880 0.54 -1.8
6,403,958 - QEN71_RS28880 0.59 -1.9
6,404,066 + QEN71_RS28880 0.70 -2.1
6,404,066 + QEN71_RS28880 0.70 +0.0
6,404,356 + -2.1
6,404,356 + -2.3
6,404,356 + +0.0
6,404,356 + +0.0
6,404,357 - +0.2
6,404,357 - +0.6
6,404,357 - +0.5
6,404,357 - +0.3
6,404,357 - -1.2
6,404,357 - +0.0
6,404,869 + QEN71_RS28885 0.43 -3.2
6,404,870 - QEN71_RS28885 0.44 -1.7
6,404,870 - QEN71_RS28885 0.44 -2.6
6,405,029 + QEN71_RS28885 0.57 -0.3
6,405,029 + QEN71_RS28885 0.57 -0.3
6,405,030 - QEN71_RS28885 0.57 -1.7
6,405,049 + QEN71_RS28885 0.59 -1.7
6,405,049 + QEN71_RS28885 0.59 -1.0
6,405,049 + QEN71_RS28885 0.59 -0.8
6,405,050 - QEN71_RS28885 0.59 -2.3
6,405,531 - -2.0
6,405,531 - -1.2
6,405,531 - -3.0
6,405,601 + -0.6
6,405,601 + -0.8
6,405,601 + -0.8
6,405,601 + -0.8
6,405,602 - -3.4
6,405,602 - -2.6
6,405,602 - -4.0
6,405,602 - -1.9
6,405,602 - -1.6
6,405,602 - -2.6
6,405,602 - -3.0
6,405,603 + +0.0
6,405,603 + -1.8
6,405,603 + -1.8
6,405,604 - -2.1
6,405,604 - -1.3
6,405,604 - -1.7
6,405,604 - -2.4
6,405,604 - -2.2
6,405,604 - -0.1
6,405,604 - -2.5
6,405,604 - -4.2
6,405,604 - -2.6
6,405,619 - QEN71_RS28890 0.11 -4.4
6,405,619 - QEN71_RS28890 0.11 -2.2
6,405,652 - QEN71_RS28890 0.16 -3.8
6,405,652 - QEN71_RS28890 0.16 -2.7
6,405,652 - QEN71_RS28890 0.16 -4.9
6,405,652 - QEN71_RS28890 0.16 -3.1
6,405,652 - QEN71_RS28890 0.16 -2.3
6,406,062 + QEN71_RS28890 0.74 +0.0
6,406,062 + QEN71_RS28890 0.74 -1.0
6,406,062 + QEN71_RS28890 0.74 -1.3
6,406,062 + QEN71_RS28890 0.74 +0.0
6,406,063 - QEN71_RS28890 0.74 -4.1
6,406,063 - QEN71_RS28890 0.74 -0.3
6,406,063 - QEN71_RS28890 0.74 -1.4
6,406,063 - QEN71_RS28890 0.74 -1.3
6,406,063 - QEN71_RS28890 0.74 -2.4
6,406,232 - -3.8
6,406,278 - +0.0
6,406,278 - +0.2
6,406,286 + -2.2
6,406,286 + -2.2
6,406,287 - -0.2
6,406,356 - -0.6
6,406,421 + QEN71_RS28895 0.17 -2.8
6,406,421 + QEN71_RS28895 0.17 -0.6
6,406,422 - QEN71_RS28895 0.17 -2.1

Or see this region's nucleotide sequence