Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS28115

Experiment: Motility_outer_sample_with_outgrowth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS28110 and QEN71_RS28115 are separated by 247 nucleotidesQEN71_RS28115 and QEN71_RS28120 are separated by 126 nucleotides QEN71_RS28110: QEN71_RS28110 - ribosome biogenesis GTP-binding protein YihA/YsxC, at 6,252,199 to 6,252,864 _RS28110 QEN71_RS28115: QEN71_RS28115 - porphobilinogen synthase, at 6,253,112 to 6,254,110 _RS28115 QEN71_RS28120: QEN71_RS28120 - protein-disulfide reductase DsbD, at 6,254,237 to 6,256,090 _RS28120 Position (kb) 6253 6254 6255Strain fitness (log2 ratio) -2 -1 0 1 2at 6252.862 kb on + strandat 6252.862 kb on + strandat 6252.862 kb on + strandat 6252.862 kb on + strandat 6252.863 kb on - strandat 6252.863 kb on - strandat 6252.863 kb on - strandat 6252.863 kb on - strandat 6252.873 kb on + strandat 6252.873 kb on + strandat 6252.873 kb on + strandat 6252.874 kb on - strandat 6252.874 kb on - strandat 6252.955 kb on + strandat 6252.964 kb on + strandat 6252.964 kb on + strandat 6252.965 kb on - strandat 6253.019 kb on - strandat 6253.019 kb on - strandat 6253.038 kb on + strandat 6253.039 kb on - strandat 6253.039 kb on - strandat 6253.039 kb on - strandat 6253.039 kb on - strandat 6253.043 kb on + strandat 6253.043 kb on + strandat 6253.043 kb on + strandat 6253.043 kb on + strandat 6253.043 kb on + strandat 6253.043 kb on + strandat 6253.043 kb on + strandat 6253.043 kb on + strandat 6253.043 kb on + strandat 6253.043 kb on + strandat 6253.043 kb on + strandat 6253.043 kb on + strandat 6253.043 kb on + strandat 6253.043 kb on + strandat 6253.043 kb on + strandat 6253.043 kb on + strandat 6253.044 kb on - strandat 6253.044 kb on - strandat 6253.044 kb on - strandat 6253.044 kb on - strandat 6253.044 kb on - strandat 6253.044 kb on - strandat 6253.044 kb on - strandat 6253.044 kb on - strandat 6253.044 kb on - strandat 6253.044 kb on - strandat 6253.044 kb on - strandat 6253.044 kb on - strandat 6253.044 kb on - strandat 6253.044 kb on - strandat 6253.045 kb on + strandat 6253.045 kb on + strandat 6253.045 kb on + strandat 6253.045 kb on + strandat 6253.045 kb on + strandat 6253.045 kb on + strandat 6253.045 kb on + strandat 6253.045 kb on + strandat 6253.045 kb on + strandat 6253.045 kb on + strandat 6253.045 kb on + strandat 6253.045 kb on + strandat 6253.045 kb on + strandat 6253.045 kb on + strandat 6253.045 kb on + strandat 6253.045 kb on + strandat 6253.045 kb on + strandat 6253.045 kb on + strandat 6253.045 kb on + strandat 6253.045 kb on + strandat 6253.045 kb on + strandat 6253.045 kb on + strandat 6253.045 kb on + strandat 6253.045 kb on + strandat 6253.045 kb on + strandat 6253.045 kb on + strandat 6253.046 kb on - strandat 6253.046 kb on - strandat 6253.046 kb on - strandat 6253.046 kb on - strandat 6253.046 kb on - strandat 6253.046 kb on - strandat 6253.046 kb on - strandat 6253.046 kb on - strandat 6253.046 kb on - strandat 6253.046 kb on - strandat 6253.046 kb on - strandat 6253.046 kb on - strandat 6253.046 kb on - strandat 6253.046 kb on - strandat 6253.046 kb on - strandat 6253.046 kb on - strandat 6253.046 kb on - strandat 6253.046 kb on - strandat 6253.046 kb on - strandat 6253.046 kb on - strandat 6253.046 kb on - strandat 6253.046 kb on - strandat 6253.046 kb on - strandat 6253.046 kb on - strandat 6253.103 kb on + strandat 6253.103 kb on + strandat 6253.103 kb on + strandat 6254.149 kb on + strandat 6254.149 kb on + strandat 6254.150 kb on - strandat 6254.150 kb on - strandat 6254.150 kb on - strandat 6254.150 kb on - strandat 6254.150 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Motility_outer_sample_with_outgrowth
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6,252,862 + -0.3
6,252,862 + -0.8
6,252,862 + -0.8
6,252,862 + +0.7
6,252,863 - +1.4
6,252,863 - -0.3
6,252,863 - +0.1
6,252,863 - +0.7
6,252,873 + +0.6
6,252,873 + +0.6
6,252,873 + -1.1
6,252,874 - -0.5
6,252,874 - +0.2
6,252,955 + +0.4
6,252,964 + +0.2
6,252,964 + -0.6
6,252,965 - -0.5
6,253,019 - -1.5
6,253,019 - +0.9
6,253,038 + -0.2
6,253,039 - -1.5
6,253,039 - +0.2
6,253,039 - -0.4
6,253,039 - +0.1
6,253,043 + -0.1
6,253,043 + +0.2
6,253,043 + +0.6
6,253,043 + +0.8
6,253,043 + +0.9
6,253,043 + +0.9
6,253,043 + +0.3
6,253,043 + -0.8
6,253,043 + +0.0
6,253,043 + -0.9
6,253,043 + -0.1
6,253,043 + +0.4
6,253,043 + +0.9
6,253,043 + +2.7
6,253,043 + -0.1
6,253,043 + +0.1
6,253,044 - -0.6
6,253,044 - +1.3
6,253,044 - +0.4
6,253,044 - +0.6
6,253,044 - +0.1
6,253,044 - -1.4
6,253,044 - +0.4
6,253,044 - -0.1
6,253,044 - -0.6
6,253,044 - +0.2
6,253,044 - -0.4
6,253,044 - -0.1
6,253,044 - -0.6
6,253,044 - -0.4
6,253,045 + -0.6
6,253,045 + +0.5
6,253,045 + -2.1
6,253,045 + -0.2
6,253,045 + -0.2
6,253,045 + +0.7
6,253,045 + +0.5
6,253,045 + -1.4
6,253,045 + -0.6
6,253,045 + -1.1
6,253,045 + +0.4
6,253,045 + +0.8
6,253,045 + -1.0
6,253,045 + -0.4
6,253,045 + +0.0
6,253,045 + -1.8
6,253,045 + +1.1
6,253,045 + +0.6
6,253,045 + +0.4
6,253,045 + +1.1
6,253,045 + +0.1
6,253,045 + -1.0
6,253,045 + +0.5
6,253,045 + -0.6
6,253,045 + -0.7
6,253,045 + +0.3
6,253,046 - +2.1
6,253,046 - -0.3
6,253,046 - +0.6
6,253,046 - -0.4
6,253,046 - -0.1
6,253,046 - -0.6
6,253,046 - -1.5
6,253,046 - +0.1
6,253,046 - +1.1
6,253,046 - +0.2
6,253,046 - +0.3
6,253,046 - -2.4
6,253,046 - +0.1
6,253,046 - -1.8
6,253,046 - -1.1
6,253,046 - +0.4
6,253,046 - +0.8
6,253,046 - +0.5
6,253,046 - -0.5
6,253,046 - -1.6
6,253,046 - +0.9
6,253,046 - -0.4
6,253,046 - -1.2
6,253,046 - -0.6
6,253,103 + +0.9
6,253,103 + -0.9
6,253,103 + -0.8
6,254,149 + -0.9
6,254,149 + +1.9
6,254,150 - -1.5
6,254,150 - +0.8
6,254,150 - +0.8
6,254,150 - +0.4
6,254,150 - +0.1

Or see this region's nucleotide sequence