Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS25410

Experiment: Motility_outer_sample_with_outgrowth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS25405 and QEN71_RS25410 are separated by 30 nucleotidesQEN71_RS25410 and QEN71_RS25415 are separated by 802 nucleotides QEN71_RS25405: QEN71_RS25405 - Kdo hydroxylase family protein, at 5,650,178 to 5,651,062 _RS25405 QEN71_RS25410: QEN71_RS25410 - lipopolysaccharide heptosyltransferase I, at 5,651,093 to 5,652,034 _RS25410 QEN71_RS25415: QEN71_RS25415 - phosphomannomutase/phosphoglucomutase, at 5,652,837 to 5,654,231 _RS25415 Position (kb) 5651 5652 5653Strain fitness (log2 ratio) -2 -1 0 1at 5650.127 kb on - strandat 5650.127 kb on - strandat 5650.381 kb on - strand, within QEN71_RS25405at 5650.738 kb on - strand, within QEN71_RS25405at 5650.738 kb on - strand, within QEN71_RS25405at 5650.738 kb on - strand, within QEN71_RS25405at 5650.954 kb on - strand, within QEN71_RS25405at 5651.037 kb on - strandat 5651.084 kb on - strandat 5652.250 kb on + strandat 5652.251 kb on - strandat 5652.251 kb on - strandat 5652.251 kb on - strandat 5652.285 kb on - strandat 5652.285 kb on - strandat 5652.312 kb on + strandat 5652.361 kb on + strandat 5652.361 kb on + strandat 5652.361 kb on + strandat 5652.362 kb on - strandat 5652.362 kb on - strandat 5652.362 kb on - strandat 5652.408 kb on - strandat 5652.408 kb on - strandat 5652.493 kb on + strandat 5652.494 kb on - strandat 5652.506 kb on - strandat 5652.506 kb on - strandat 5652.564 kb on + strandat 5652.564 kb on + strandat 5652.565 kb on + strandat 5652.565 kb on - strandat 5652.590 kb on - strandat 5652.724 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Motility_outer_sample_with_outgrowth
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5,650,127 - -0.7
5,650,127 - -0.4
5,650,381 - QEN71_RS25405 0.23 -0.6
5,650,738 - QEN71_RS25405 0.63 +1.2
5,650,738 - QEN71_RS25405 0.63 +1.2
5,650,738 - QEN71_RS25405 0.63 -0.5
5,650,954 - QEN71_RS25405 0.88 +1.2
5,651,037 - +1.5
5,651,084 - +0.0
5,652,250 + +1.0
5,652,251 - -0.7
5,652,251 - +0.3
5,652,251 - -0.5
5,652,285 - -2.4
5,652,285 - -1.9
5,652,312 + -0.1
5,652,361 + +1.4
5,652,361 + +0.8
5,652,361 + -0.3
5,652,362 - +0.7
5,652,362 - +1.0
5,652,362 - -1.0
5,652,408 - -0.2
5,652,408 - +0.6
5,652,493 + +0.6
5,652,494 - -0.5
5,652,506 - +0.4
5,652,506 - -0.0
5,652,564 + +0.8
5,652,564 + -1.0
5,652,565 + -0.2
5,652,565 - +1.1
5,652,590 - +0.3
5,652,724 + -1.6

Or see this region's nucleotide sequence