Experiment: Motility_outer_sample_with_outgrowth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS04380 and QEN71_RS04385 are separated by 219 nucleotides QEN71_RS04385 and QEN71_RS04390 are separated by 322 nucleotides QEN71_RS04390 and QEN71_RS04395 are separated by 47 nucleotides QEN71_RS04395 and QEN71_RS04400 are separated by 178 nucleotides
QEN71_RS04380: QEN71_RS04380 - MATE family efflux transporter, at 967,023 to 968,414
_RS04380
QEN71_RS04385: QEN71_RS04385 - RNA-binding S4 domain-containing protein, at 968,634 to 968,852
_RS04385
QEN71_RS04390: QEN71_RS04390 - hypothetical protein, at 969,175 to 969,642
_RS04390
QEN71_RS04395: QEN71_RS04395 - hypothetical protein, at 969,690 to 969,953
_RS04395
QEN71_RS04400: QEN71_RS04400 - ATP-dependent helicase, at 970,132 to 972,336
_RS04400
Position (kb) 969
970 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 968.187 kb on + strand, within QEN71_RS04380 at 968.187 kb on + strand, within QEN71_RS04380 at 968.187 kb on + strand, within QEN71_RS04380 at 968.187 kb on + strand, within QEN71_RS04380 at 968.187 kb on + strand, within QEN71_RS04380 at 968.187 kb on + strand, within QEN71_RS04380 at 968.199 kb on + strand, within QEN71_RS04380 at 968.199 kb on + strand, within QEN71_RS04380 at 968.418 kb on - strand at 968.500 kb on + strand at 968.500 kb on + strand at 968.500 kb on + strand at 968.500 kb on + strand at 968.500 kb on + strand at 968.500 kb on + strand at 968.500 kb on + strand at 968.500 kb on + strand at 968.500 kb on + strand at 968.500 kb on + strand at 968.501 kb on - strand at 968.501 kb on - strand at 968.501 kb on - strand at 968.501 kb on - strand at 968.501 kb on - strand at 968.501 kb on - strand at 968.501 kb on - strand at 968.501 kb on - strand at 968.501 kb on - strand at 968.501 kb on - strand at 968.501 kb on - strand at 968.501 kb on - strand at 968.501 kb on - strand at 968.501 kb on - strand at 968.673 kb on + strand, within QEN71_RS04385 at 968.673 kb on + strand, within QEN71_RS04385 at 968.674 kb on - strand, within QEN71_RS04385 at 968.674 kb on - strand, within QEN71_RS04385 at 968.674 kb on - strand, within QEN71_RS04385 at 968.674 kb on - strand, within QEN71_RS04385 at 968.674 kb on - strand, within QEN71_RS04385 at 968.674 kb on - strand, within QEN71_RS04385 at 968.674 kb on - strand, within QEN71_RS04385 at 968.674 kb on - strand, within QEN71_RS04385 at 968.818 kb on + strand, within QEN71_RS04385 at 968.818 kb on + strand, within QEN71_RS04385 at 968.819 kb on - strand, within QEN71_RS04385 at 968.846 kb on + strand at 968.846 kb on + strand at 968.846 kb on + strand at 968.847 kb on - strand at 968.847 kb on - strand at 968.847 kb on - strand at 968.847 kb on - strand at 968.847 kb on - strand at 968.907 kb on + strand at 968.907 kb on + strand at 968.907 kb on + strand at 968.907 kb on + strand at 968.908 kb on - strand at 968.908 kb on - strand at 968.908 kb on - strand at 968.908 kb on - strand at 968.943 kb on + strand at 968.944 kb on - strand at 968.944 kb on - strand at 968.981 kb on + strand at 968.981 kb on + strand at 968.981 kb on + strand at 968.981 kb on + strand at 968.981 kb on + strand at 968.981 kb on + strand at 968.981 kb on + strand at 968.981 kb on + strand at 968.982 kb on - strand at 968.982 kb on - strand at 968.982 kb on - strand at 968.982 kb on - strand at 968.982 kb on - strand at 969.002 kb on + strand at 969.002 kb on + strand at 969.002 kb on + strand at 969.002 kb on + strand at 969.002 kb on + strand at 969.002 kb on + strand at 969.002 kb on + strand at 969.003 kb on - strand at 969.003 kb on - strand at 969.012 kb on - strand at 969.012 kb on - strand at 969.063 kb on + strand at 969.063 kb on + strand at 969.063 kb on + strand at 969.064 kb on - strand at 969.064 kb on - strand at 969.092 kb on + strand at 969.190 kb on - strand at 969.190 kb on - strand at 969.190 kb on - strand at 969.190 kb on - strand at 969.190 kb on - strand at 969.190 kb on - strand at 969.190 kb on - strand at 969.449 kb on - strand, within QEN71_RS04390 at 969.514 kb on + strand, within QEN71_RS04390 at 969.514 kb on + strand, within QEN71_RS04390 at 969.514 kb on + strand, within QEN71_RS04390 at 969.514 kb on + strand, within QEN71_RS04390 at 969.514 kb on + strand, within QEN71_RS04390 at 969.514 kb on + strand, within QEN71_RS04390 at 969.514 kb on + strand, within QEN71_RS04390 at 969.514 kb on + strand, within QEN71_RS04390 at 969.514 kb on + strand, within QEN71_RS04390 at 969.514 kb on + strand, within QEN71_RS04390 at 969.514 kb on + strand, within QEN71_RS04390 at 969.514 kb on + strand, within QEN71_RS04390 at 969.515 kb on - strand, within QEN71_RS04390 at 969.515 kb on - strand, within QEN71_RS04390 at 969.515 kb on - strand, within QEN71_RS04390 at 969.515 kb on - strand, within QEN71_RS04390 at 969.515 kb on - strand, within QEN71_RS04390 at 969.515 kb on - strand, within QEN71_RS04390 at 969.515 kb on - strand, within QEN71_RS04390 at 969.515 kb on - strand, within QEN71_RS04390 at 969.636 kb on + strand at 969.636 kb on + strand at 969.636 kb on + strand at 969.636 kb on + strand at 969.637 kb on - strand at 969.637 kb on - strand at 969.637 kb on - strand at 969.952 kb on - strand at 969.952 kb on - strand at 970.088 kb on - strand at 970.088 kb on - strand at 970.088 kb on - strand at 970.093 kb on + strand at 970.093 kb on + strand at 970.095 kb on + strand at 970.095 kb on + strand at 970.095 kb on + strand at 970.096 kb on - strand at 970.096 kb on - strand at 970.096 kb on - strand at 970.096 kb on - strand at 970.101 kb on - strand at 970.549 kb on + strand, within QEN71_RS04400
Per-strain Table
Position Strand Gene LocusTag Fraction Motility_outer_sample_with_outgrowth remove 968,187 + QEN71_RS04380 0.84 -0.2 968,187 + QEN71_RS04380 0.84 +0.6 968,187 + QEN71_RS04380 0.84 -0.2 968,187 + QEN71_RS04380 0.84 +0.4 968,187 + QEN71_RS04380 0.84 -1.0 968,187 + QEN71_RS04380 0.84 +0.8 968,199 + QEN71_RS04380 0.84 +0.8 968,199 + QEN71_RS04380 0.84 -0.8 968,418 - -0.3 968,500 + +1.2 968,500 + +0.3 968,500 + -0.9 968,500 + +0.3 968,500 + -1.6 968,500 + -0.6 968,500 + -0.8 968,500 + -1.1 968,500 + -1.4 968,500 + -0.7 968,501 - -0.4 968,501 - +1.5 968,501 - +0.9 968,501 - +0.1 968,501 - -0.7 968,501 - -0.6 968,501 - +0.3 968,501 - +0.3 968,501 - -0.6 968,501 - +0.2 968,501 - +0.2 968,501 - +0.1 968,501 - +0.2 968,501 - +0.1 968,673 + QEN71_RS04385 0.18 -0.3 968,673 + QEN71_RS04385 0.18 +2.6 968,674 - QEN71_RS04385 0.18 -1.8 968,674 - QEN71_RS04385 0.18 -0.3 968,674 - QEN71_RS04385 0.18 -0.7 968,674 - QEN71_RS04385 0.18 -0.8 968,674 - QEN71_RS04385 0.18 -2.1 968,674 - QEN71_RS04385 0.18 -1.3 968,674 - QEN71_RS04385 0.18 +0.1 968,674 - QEN71_RS04385 0.18 +0.1 968,818 + QEN71_RS04385 0.84 +0.2 968,818 + QEN71_RS04385 0.84 +0.7 968,819 - QEN71_RS04385 0.84 -1.0 968,846 + +0.1 968,846 + -0.3 968,846 + -1.2 968,847 - +0.4 968,847 - +0.0 968,847 - -2.2 968,847 - -0.6 968,847 - -0.8 968,907 + -0.3 968,907 + -2.9 968,907 + +0.8 968,907 + -0.8 968,908 - +0.2 968,908 - +0.6 968,908 - +0.3 968,908 - +1.0 968,943 + +1.5 968,944 - +0.9 968,944 - +0.4 968,981 + +0.1 968,981 + -0.3 968,981 + -1.0 968,981 + -0.6 968,981 + +0.3 968,981 + +0.0 968,981 + +0.3 968,981 + +1.0 968,982 - -0.9 968,982 - -1.1 968,982 - +0.3 968,982 - +0.5 968,982 - +0.0 969,002 + +1.1 969,002 + +1.4 969,002 + +1.7 969,002 + -1.4 969,002 + -0.1 969,002 + +0.3 969,002 + +0.5 969,003 - +0.0 969,003 - +2.8 969,012 - +0.0 969,012 - -0.0 969,063 + -0.6 969,063 + +0.9 969,063 + +0.6 969,064 - -0.2 969,064 - -0.2 969,092 + +1.3 969,190 - -0.3 969,190 - -2.1 969,190 - -0.5 969,190 - -0.1 969,190 - -0.4 969,190 - -1.0 969,190 - +1.7 969,449 - QEN71_RS04390 0.59 +0.0 969,514 + QEN71_RS04390 0.72 +2.0 969,514 + QEN71_RS04390 0.72 +0.2 969,514 + QEN71_RS04390 0.72 +1.2 969,514 + QEN71_RS04390 0.72 -0.5 969,514 + QEN71_RS04390 0.72 -1.8 969,514 + QEN71_RS04390 0.72 +0.4 969,514 + QEN71_RS04390 0.72 +0.4 969,514 + QEN71_RS04390 0.72 +0.9 969,514 + QEN71_RS04390 0.72 -0.3 969,514 + QEN71_RS04390 0.72 -0.5 969,514 + QEN71_RS04390 0.72 -0.2 969,514 + QEN71_RS04390 0.72 -0.3 969,515 - QEN71_RS04390 0.73 +0.0 969,515 - QEN71_RS04390 0.73 -1.0 969,515 - QEN71_RS04390 0.73 +0.6 969,515 - QEN71_RS04390 0.73 +0.0 969,515 - QEN71_RS04390 0.73 -0.3 969,515 - QEN71_RS04390 0.73 -0.6 969,515 - QEN71_RS04390 0.73 +0.4 969,515 - QEN71_RS04390 0.73 +0.3 969,636 + -0.3 969,636 + -0.2 969,636 + +0.1 969,636 + -0.6 969,637 - +0.8 969,637 - +0.7 969,637 - +0.2 969,952 - -0.0 969,952 - -0.8 970,088 - -0.4 970,088 - +0.1 970,088 - -1.3 970,093 + -1.0 970,093 + +0.2 970,095 + -1.2 970,095 + -1.6 970,095 + +0.3 970,096 - -0.1 970,096 - +0.0 970,096 - -0.2 970,096 - +0.3 970,101 - -0.4 970,549 + QEN71_RS04400 0.19 -1.7
Or see this region's nucleotide sequence