Experiment: Motility_outer_sample_with_outgrowth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS01285 and QEN71_RS01290 are separated by 130 nucleotides QEN71_RS01290 and QEN71_RS01295 are separated by 33 nucleotides QEN71_RS01295 and QEN71_RS01300 are separated by 397 nucleotides
QEN71_RS01285: QEN71_RS01285 - VanZ family protein, at 290,117 to 291,277
_RS01285
QEN71_RS01290: QEN71_RS01290 - ferredoxin, at 291,408 to 291,731
_RS01290
QEN71_RS01295: QEN71_RS01295 - alpha/beta hydrolase, at 291,765 to 292,409
_RS01295
QEN71_RS01300: QEN71_RS01300 - D-alanyl-D-alanine carboxypeptidase family protein, at 292,807 to 294,036
_RS01300
Position (kb) 291
292
293 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 291.102 kb on + strand, within QEN71_RS01285 at 291.116 kb on + strand, within QEN71_RS01285 at 291.117 kb on - strand, within QEN71_RS01285 at 291.155 kb on + strand, within QEN71_RS01285 at 291.156 kb on - strand, within QEN71_RS01285 at 291.156 kb on - strand, within QEN71_RS01285 at 291.203 kb on + strand at 291.203 kb on + strand at 291.204 kb on - strand at 291.204 kb on - strand at 291.204 kb on - strand at 291.204 kb on - strand at 291.204 kb on - strand at 291.204 kb on - strand at 291.204 kb on - strand at 291.319 kb on + strand at 291.319 kb on + strand at 291.319 kb on + strand at 291.319 kb on + strand at 291.319 kb on + strand at 291.319 kb on + strand at 291.320 kb on - strand at 291.320 kb on - strand at 291.320 kb on - strand at 291.320 kb on - strand at 291.320 kb on - strand at 291.321 kb on + strand at 291.321 kb on + strand at 291.321 kb on + strand at 291.321 kb on + strand at 291.321 kb on + strand at 291.321 kb on + strand at 291.322 kb on - strand at 291.322 kb on - strand at 291.322 kb on - strand at 291.322 kb on - strand at 291.338 kb on + strand at 291.338 kb on + strand at 291.338 kb on + strand at 291.338 kb on + strand at 291.338 kb on + strand at 291.339 kb on - strand at 291.339 kb on - strand at 291.339 kb on - strand at 291.339 kb on - strand at 291.339 kb on - strand at 291.339 kb on - strand at 291.339 kb on - strand at 291.476 kb on + strand, within QEN71_RS01290 at 291.476 kb on + strand, within QEN71_RS01290 at 291.476 kb on + strand, within QEN71_RS01290 at 291.476 kb on + strand, within QEN71_RS01290 at 291.477 kb on - strand, within QEN71_RS01290 at 291.477 kb on - strand, within QEN71_RS01290 at 291.477 kb on - strand, within QEN71_RS01290 at 291.513 kb on + strand, within QEN71_RS01290 at 291.513 kb on + strand, within QEN71_RS01290 at 291.513 kb on - strand, within QEN71_RS01290 at 291.514 kb on - strand, within QEN71_RS01290 at 291.514 kb on - strand, within QEN71_RS01290 at 291.566 kb on + strand, within QEN71_RS01290 at 291.566 kb on + strand, within QEN71_RS01290 at 291.566 kb on + strand, within QEN71_RS01290 at 291.566 kb on + strand, within QEN71_RS01290 at 291.567 kb on - strand, within QEN71_RS01290 at 291.567 kb on - strand, within QEN71_RS01290 at 291.567 kb on - strand, within QEN71_RS01290 at 291.640 kb on - strand, within QEN71_RS01290 at 291.640 kb on - strand, within QEN71_RS01290 at 291.645 kb on + strand, within QEN71_RS01290 at 291.645 kb on + strand, within QEN71_RS01290 at 291.645 kb on + strand, within QEN71_RS01290 at 291.645 kb on + strand, within QEN71_RS01290 at 291.645 kb on + strand, within QEN71_RS01290 at 291.645 kb on + strand, within QEN71_RS01290 at 291.645 kb on + strand, within QEN71_RS01290 at 291.645 kb on + strand, within QEN71_RS01290 at 291.645 kb on + strand, within QEN71_RS01290 at 291.645 kb on + strand, within QEN71_RS01290 at 291.645 kb on + strand, within QEN71_RS01290 at 291.645 kb on + strand, within QEN71_RS01290 at 291.645 kb on + strand, within QEN71_RS01290 at 291.645 kb on + strand, within QEN71_RS01290 at 291.645 kb on + strand, within QEN71_RS01290 at 291.645 kb on + strand, within QEN71_RS01290 at 291.645 kb on + strand, within QEN71_RS01290 at 291.645 kb on + strand, within QEN71_RS01290 at 291.645 kb on + strand, within QEN71_RS01290 at 291.645 kb on + strand, within QEN71_RS01290 at 291.645 kb on + strand, within QEN71_RS01290 at 291.646 kb on - strand, within QEN71_RS01290 at 291.646 kb on - strand, within QEN71_RS01290 at 291.646 kb on - strand, within QEN71_RS01290 at 291.646 kb on - strand, within QEN71_RS01290 at 291.646 kb on - strand, within QEN71_RS01290 at 291.646 kb on - strand, within QEN71_RS01290 at 291.646 kb on - strand, within QEN71_RS01290 at 291.646 kb on - strand, within QEN71_RS01290 at 291.646 kb on - strand, within QEN71_RS01290 at 291.646 kb on - strand, within QEN71_RS01290 at 291.646 kb on - strand, within QEN71_RS01290 at 291.646 kb on - strand, within QEN71_RS01290 at 291.646 kb on - strand, within QEN71_RS01290 at 291.646 kb on - strand, within QEN71_RS01290 at 291.663 kb on - strand, within QEN71_RS01290 at 291.740 kb on + strand at 291.772 kb on + strand at 291.772 kb on + strand at 291.772 kb on + strand at 291.772 kb on + strand at 291.772 kb on + strand at 291.772 kb on + strand at 291.772 kb on + strand at 291.772 kb on + strand at 291.772 kb on + strand at 291.772 kb on + strand at 291.772 kb on + strand at 291.772 kb on + strand at 291.772 kb on + strand at 291.772 kb on + strand at 291.772 kb on + strand at 291.773 kb on - strand at 291.773 kb on - strand at 291.773 kb on - strand at 291.773 kb on - strand at 291.773 kb on - strand at 291.773 kb on - strand at 291.773 kb on - strand at 291.773 kb on - strand at 291.773 kb on - strand at 291.773 kb on - strand at 291.773 kb on - strand at 291.773 kb on - strand at 291.773 kb on - strand at 291.773 kb on - strand at 291.773 kb on - strand at 291.773 kb on - strand at 291.786 kb on + strand at 291.786 kb on + strand at 291.786 kb on + strand at 291.786 kb on + strand at 291.786 kb on + strand at 291.786 kb on + strand at 291.787 kb on - strand at 291.787 kb on - strand at 291.787 kb on - strand at 291.787 kb on - strand at 291.966 kb on + strand, within QEN71_RS01295 at 291.966 kb on + strand, within QEN71_RS01295 at 291.966 kb on + strand, within QEN71_RS01295 at 291.966 kb on + strand, within QEN71_RS01295 at 291.966 kb on + strand, within QEN71_RS01295 at 291.966 kb on + strand, within QEN71_RS01295 at 291.966 kb on + strand, within QEN71_RS01295 at 291.966 kb on + strand, within QEN71_RS01295 at 291.967 kb on - strand, within QEN71_RS01295 at 291.967 kb on - strand, within QEN71_RS01295 at 291.967 kb on - strand, within QEN71_RS01295 at 291.967 kb on - strand, within QEN71_RS01295 at 291.967 kb on - strand, within QEN71_RS01295 at 291.967 kb on - strand, within QEN71_RS01295 at 291.967 kb on - strand, within QEN71_RS01295 at 291.975 kb on + strand, within QEN71_RS01295 at 291.975 kb on + strand, within QEN71_RS01295 at 291.975 kb on + strand, within QEN71_RS01295 at 291.975 kb on + strand, within QEN71_RS01295 at 291.975 kb on + strand, within QEN71_RS01295 at 291.975 kb on + strand, within QEN71_RS01295 at 291.976 kb on - strand, within QEN71_RS01295 at 291.976 kb on - strand, within QEN71_RS01295 at 291.976 kb on - strand, within QEN71_RS01295 at 291.976 kb on - strand, within QEN71_RS01295 at 291.976 kb on - strand, within QEN71_RS01295 at 291.976 kb on - strand, within QEN71_RS01295 at 291.976 kb on - strand, within QEN71_RS01295 at 291.976 kb on - strand, within QEN71_RS01295 at 291.976 kb on - strand, within QEN71_RS01295 at 291.976 kb on - strand, within QEN71_RS01295 at 291.976 kb on - strand, within QEN71_RS01295 at 291.976 kb on - strand, within QEN71_RS01295 at 291.976 kb on - strand, within QEN71_RS01295 at 291.976 kb on - strand, within QEN71_RS01295 at 292.274 kb on + strand, within QEN71_RS01295 at 292.274 kb on + strand, within QEN71_RS01295 at 292.274 kb on + strand, within QEN71_RS01295 at 292.275 kb on - strand, within QEN71_RS01295 at 292.275 kb on - strand, within QEN71_RS01295 at 292.275 kb on - strand, within QEN71_RS01295 at 292.276 kb on - strand, within QEN71_RS01295 at 292.373 kb on + strand at 292.373 kb on + strand at 292.373 kb on + strand at 292.373 kb on + strand at 292.373 kb on + strand at 292.374 kb on - strand at 292.374 kb on - strand at 292.374 kb on - strand at 292.374 kb on - strand at 292.374 kb on - strand at 292.374 kb on - strand at 292.411 kb on + strand at 292.411 kb on + strand at 292.411 kb on + strand at 292.412 kb on - strand at 292.412 kb on - strand at 292.412 kb on - strand at 292.412 kb on - strand at 292.412 kb on - strand at 292.426 kb on + strand at 292.426 kb on + strand at 292.426 kb on + strand at 292.426 kb on + strand at 292.437 kb on + strand at 292.458 kb on + strand at 292.458 kb on + strand at 292.459 kb on - strand at 292.525 kb on + strand at 292.525 kb on + strand at 292.552 kb on + strand at 292.552 kb on + strand at 292.552 kb on + strand at 292.553 kb on - strand at 292.553 kb on - strand at 292.554 kb on + strand at 292.554 kb on + strand at 292.554 kb on + strand at 292.554 kb on + strand at 292.554 kb on + strand at 292.554 kb on + strand at 292.555 kb on - strand at 292.555 kb on - strand at 292.555 kb on - strand at 292.555 kb on - strand at 292.555 kb on - strand at 292.555 kb on - strand at 292.731 kb on + strand at 292.731 kb on + strand at 292.731 kb on + strand at 292.732 kb on - strand at 292.732 kb on - strand at 292.732 kb on - strand at 292.732 kb on - strand at 292.732 kb on - strand at 292.732 kb on - strand at 292.732 kb on - strand at 292.807 kb on - strand at 292.807 kb on - strand at 292.807 kb on - strand at 292.807 kb on - strand at 293.065 kb on + strand, within QEN71_RS01300 at 293.065 kb on + strand, within QEN71_RS01300 at 293.065 kb on + strand, within QEN71_RS01300 at 293.065 kb on + strand, within QEN71_RS01300 at 293.065 kb on + strand, within QEN71_RS01300 at 293.065 kb on + strand, within QEN71_RS01300 at 293.065 kb on + strand, within QEN71_RS01300 at 293.066 kb on - strand, within QEN71_RS01300 at 293.066 kb on - strand, within QEN71_RS01300 at 293.066 kb on - strand, within QEN71_RS01300 at 293.066 kb on - strand, within QEN71_RS01300 at 293.066 kb on - strand, within QEN71_RS01300 at 293.209 kb on + strand, within QEN71_RS01300 at 293.209 kb on + strand, within QEN71_RS01300 at 293.209 kb on + strand, within QEN71_RS01300 at 293.209 kb on + strand, within QEN71_RS01300 at 293.210 kb on - strand, within QEN71_RS01300 at 293.374 kb on + strand, within QEN71_RS01300 at 293.374 kb on + strand, within QEN71_RS01300 at 293.374 kb on + strand, within QEN71_RS01300 at 293.374 kb on + strand, within QEN71_RS01300 at 293.374 kb on + strand, within QEN71_RS01300 at 293.374 kb on + strand, within QEN71_RS01300 at 293.374 kb on + strand, within QEN71_RS01300 at 293.375 kb on - strand, within QEN71_RS01300 at 293.375 kb on - strand, within QEN71_RS01300 at 293.375 kb on - strand, within QEN71_RS01300 at 293.375 kb on - strand, within QEN71_RS01300 at 293.375 kb on - strand, within QEN71_RS01300
Per-strain Table
Position Strand Gene LocusTag Fraction Motility_outer_sample_with_outgrowth remove 291,102 + QEN71_RS01285 0.85 -0.1 291,116 + QEN71_RS01285 0.86 -0.5 291,117 - QEN71_RS01285 0.86 -1.6 291,155 + QEN71_RS01285 0.89 -0.4 291,156 - QEN71_RS01285 0.89 -0.2 291,156 - QEN71_RS01285 0.89 -1.9 291,203 + -1.6 291,203 + -2.0 291,204 - -0.2 291,204 - -1.1 291,204 - -1.2 291,204 - +0.3 291,204 - +0.8 291,204 - -0.4 291,204 - -2.6 291,319 + -0.0 291,319 + +0.1 291,319 + -0.3 291,319 + +0.1 291,319 + -0.3 291,319 + -0.1 291,320 - -1.1 291,320 - +0.3 291,320 - +0.5 291,320 - +0.2 291,320 - +0.1 291,321 + -0.2 291,321 + +0.6 291,321 + -1.0 291,321 + +0.4 291,321 + -0.2 291,321 + -0.6 291,322 - +0.2 291,322 - -0.7 291,322 - +0.3 291,322 - -0.9 291,338 + -0.3 291,338 + -0.8 291,338 + +0.5 291,338 + -0.0 291,338 + +0.5 291,339 - -1.0 291,339 - -0.4 291,339 - +0.1 291,339 - -0.7 291,339 - -0.6 291,339 - -1.2 291,339 - +0.1 291,476 + QEN71_RS01290 0.21 +1.5 291,476 + QEN71_RS01290 0.21 +1.0 291,476 + QEN71_RS01290 0.21 +1.6 291,476 + QEN71_RS01290 0.21 -0.7 291,477 - QEN71_RS01290 0.21 -0.4 291,477 - QEN71_RS01290 0.21 -1.2 291,477 - QEN71_RS01290 0.21 -2.3 291,513 + QEN71_RS01290 0.32 -0.9 291,513 + QEN71_RS01290 0.32 -0.3 291,513 - QEN71_RS01290 0.32 -1.1 291,514 - QEN71_RS01290 0.33 -0.6 291,514 - QEN71_RS01290 0.33 +0.3 291,566 + QEN71_RS01290 0.49 +1.2 291,566 + QEN71_RS01290 0.49 -0.1 291,566 + QEN71_RS01290 0.49 -0.4 291,566 + QEN71_RS01290 0.49 -0.8 291,567 - QEN71_RS01290 0.49 +0.8 291,567 - QEN71_RS01290 0.49 -0.5 291,567 - QEN71_RS01290 0.49 -0.0 291,640 - QEN71_RS01290 0.72 +0.1 291,640 - QEN71_RS01290 0.72 -0.3 291,645 + QEN71_RS01290 0.73 -0.1 291,645 + QEN71_RS01290 0.73 -0.1 291,645 + QEN71_RS01290 0.73 -0.2 291,645 + QEN71_RS01290 0.73 -0.1 291,645 + QEN71_RS01290 0.73 -0.0 291,645 + QEN71_RS01290 0.73 -0.2 291,645 + QEN71_RS01290 0.73 -1.3 291,645 + QEN71_RS01290 0.73 -0.1 291,645 + QEN71_RS01290 0.73 -0.6 291,645 + QEN71_RS01290 0.73 +0.1 291,645 + QEN71_RS01290 0.73 +0.1 291,645 + QEN71_RS01290 0.73 +0.8 291,645 + QEN71_RS01290 0.73 -0.5 291,645 + QEN71_RS01290 0.73 +0.0 291,645 + QEN71_RS01290 0.73 +0.1 291,645 + QEN71_RS01290 0.73 -0.7 291,645 + QEN71_RS01290 0.73 -0.2 291,645 + QEN71_RS01290 0.73 +1.7 291,645 + QEN71_RS01290 0.73 -0.4 291,645 + QEN71_RS01290 0.73 +0.4 291,645 + QEN71_RS01290 0.73 +0.3 291,646 - QEN71_RS01290 0.73 -1.2 291,646 - QEN71_RS01290 0.73 +0.3 291,646 - QEN71_RS01290 0.73 -1.6 291,646 - QEN71_RS01290 0.73 -0.4 291,646 - QEN71_RS01290 0.73 -0.7 291,646 - QEN71_RS01290 0.73 -0.9 291,646 - QEN71_RS01290 0.73 -0.1 291,646 - QEN71_RS01290 0.73 -0.0 291,646 - QEN71_RS01290 0.73 +1.4 291,646 - QEN71_RS01290 0.73 -0.7 291,646 - QEN71_RS01290 0.73 +0.1 291,646 - QEN71_RS01290 0.73 +0.3 291,646 - QEN71_RS01290 0.73 +0.0 291,646 - QEN71_RS01290 0.73 -2.2 291,663 - QEN71_RS01290 0.79 -0.5 291,740 + +0.5 291,772 + +1.1 291,772 + -0.5 291,772 + -1.2 291,772 + +0.1 291,772 + -0.6 291,772 + -0.3 291,772 + -0.5 291,772 + -0.0 291,772 + +1.4 291,772 + +1.5 291,772 + +1.1 291,772 + -1.1 291,772 + -0.6 291,772 + -1.2 291,772 + -3.1 291,773 - -0.0 291,773 - -0.2 291,773 - -0.7 291,773 - -0.4 291,773 - -1.3 291,773 - +0.6 291,773 - +0.6 291,773 - -1.6 291,773 - -0.3 291,773 - -2.0 291,773 - -0.6 291,773 - +0.4 291,773 - -0.7 291,773 - -0.6 291,773 - -0.9 291,773 - -0.2 291,786 + -0.2 291,786 + -0.2 291,786 + -0.5 291,786 + +0.5 291,786 + -0.3 291,786 + -0.7 291,787 - -2.1 291,787 - -0.7 291,787 - -0.5 291,787 - +1.2 291,966 + QEN71_RS01295 0.31 -0.3 291,966 + QEN71_RS01295 0.31 -0.0 291,966 + QEN71_RS01295 0.31 -0.1 291,966 + QEN71_RS01295 0.31 -0.2 291,966 + QEN71_RS01295 0.31 +0.2 291,966 + QEN71_RS01295 0.31 +1.1 291,966 + QEN71_RS01295 0.31 -0.0 291,966 + QEN71_RS01295 0.31 -2.8 291,967 - QEN71_RS01295 0.31 -0.3 291,967 - QEN71_RS01295 0.31 +0.1 291,967 - QEN71_RS01295 0.31 -1.7 291,967 - QEN71_RS01295 0.31 -1.2 291,967 - QEN71_RS01295 0.31 -0.0 291,967 - QEN71_RS01295 0.31 +0.1 291,967 - QEN71_RS01295 0.31 +0.8 291,975 + QEN71_RS01295 0.33 -1.5 291,975 + QEN71_RS01295 0.33 -1.4 291,975 + QEN71_RS01295 0.33 -1.2 291,975 + QEN71_RS01295 0.33 +0.1 291,975 + QEN71_RS01295 0.33 +0.8 291,975 + QEN71_RS01295 0.33 +0.3 291,976 - QEN71_RS01295 0.33 -0.4 291,976 - QEN71_RS01295 0.33 -0.5 291,976 - QEN71_RS01295 0.33 -0.1 291,976 - QEN71_RS01295 0.33 -0.6 291,976 - QEN71_RS01295 0.33 +0.3 291,976 - QEN71_RS01295 0.33 -0.2 291,976 - QEN71_RS01295 0.33 -0.4 291,976 - QEN71_RS01295 0.33 +0.5 291,976 - QEN71_RS01295 0.33 +0.2 291,976 - QEN71_RS01295 0.33 -0.7 291,976 - QEN71_RS01295 0.33 -1.4 291,976 - QEN71_RS01295 0.33 -1.7 291,976 - QEN71_RS01295 0.33 +0.4 291,976 - QEN71_RS01295 0.33 -2.6 292,274 + QEN71_RS01295 0.79 +0.3 292,274 + QEN71_RS01295 0.79 -0.3 292,274 + QEN71_RS01295 0.79 -0.0 292,275 - QEN71_RS01295 0.79 +0.6 292,275 - QEN71_RS01295 0.79 +2.2 292,275 - QEN71_RS01295 0.79 -1.2 292,276 - QEN71_RS01295 0.79 -0.1 292,373 + -0.3 292,373 + -0.6 292,373 + +1.1 292,373 + -0.2 292,373 + +0.5 292,374 - +0.1 292,374 - -0.3 292,374 - -1.3 292,374 - -1.6 292,374 - -0.7 292,374 - -0.6 292,411 + -0.2 292,411 + +0.0 292,411 + -0.1 292,412 - +1.8 292,412 - -0.5 292,412 - -1.7 292,412 - +0.4 292,412 - +0.3 292,426 + -1.9 292,426 + +0.5 292,426 + -1.2 292,426 + -0.2 292,437 + -1.1 292,458 + -1.3 292,458 + +1.1 292,459 - +0.2 292,525 + -0.3 292,525 + +1.4 292,552 + -0.6 292,552 + +0.4 292,552 + -1.1 292,553 - -0.2 292,553 - +0.1 292,554 + +1.4 292,554 + -0.7 292,554 + -0.5 292,554 + +0.3 292,554 + -1.0 292,554 + +0.1 292,555 - -0.1 292,555 - +0.7 292,555 - -0.9 292,555 - -0.4 292,555 - -0.5 292,555 - +0.0 292,731 + -1.5 292,731 + -0.1 292,731 + -0.2 292,732 - -0.7 292,732 - -0.5 292,732 - +0.5 292,732 - +0.3 292,732 - +0.3 292,732 - -0.0 292,732 - +0.2 292,807 - -0.0 292,807 - -0.4 292,807 - -0.7 292,807 - -0.4 293,065 + QEN71_RS01300 0.21 +0.1 293,065 + QEN71_RS01300 0.21 +1.4 293,065 + QEN71_RS01300 0.21 +0.8 293,065 + QEN71_RS01300 0.21 +0.1 293,065 + QEN71_RS01300 0.21 +0.3 293,065 + QEN71_RS01300 0.21 +0.5 293,065 + QEN71_RS01300 0.21 +1.4 293,066 - QEN71_RS01300 0.21 +0.5 293,066 - QEN71_RS01300 0.21 +0.0 293,066 - QEN71_RS01300 0.21 -2.1 293,066 - QEN71_RS01300 0.21 +0.8 293,066 - QEN71_RS01300 0.21 -0.3 293,209 + QEN71_RS01300 0.33 -0.8 293,209 + QEN71_RS01300 0.33 -0.0 293,209 + QEN71_RS01300 0.33 +0.1 293,209 + QEN71_RS01300 0.33 -0.7 293,210 - QEN71_RS01300 0.33 +2.0 293,374 + QEN71_RS01300 0.46 -0.9 293,374 + QEN71_RS01300 0.46 -0.3 293,374 + QEN71_RS01300 0.46 +0.3 293,374 + QEN71_RS01300 0.46 -0.3 293,374 + QEN71_RS01300 0.46 +0.5 293,374 + QEN71_RS01300 0.46 -0.3 293,374 + QEN71_RS01300 0.46 +0.6 293,375 - QEN71_RS01300 0.46 -0.9 293,375 - QEN71_RS01300 0.46 -2.0 293,375 - QEN71_RS01300 0.46 -0.5 293,375 - QEN71_RS01300 0.46 +0.8 293,375 - QEN71_RS01300 0.46 -0.6
Or see this region's nucleotide sequence