Experiment: Motility_outer_sample_with_outgrowth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS00255 and QEN71_RS00260 are separated by 2 nucleotides QEN71_RS00260 and QEN71_RS00265 are separated by 106 nucleotides QEN71_RS00265 and QEN71_RS00270 are separated by 43 nucleotides
QEN71_RS00255: QEN71_RS00255 - Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA, at 53,366 to 54,859
_RS00255
QEN71_RS00260: QEN71_RS00260 - Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB, at 54,862 to 56,337
_RS00260
QEN71_RS00265: QEN71_RS00265 - polyphosphate kinase 2 family protein, at 56,444 to 57,280
_RS00265
QEN71_RS00270: QEN71_RS00270 - exodeoxyribonuclease III, at 57,324 to 58,103
_RS00270
Position (kb) 54
55
56
57 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 56.344 kb on + strand at 56.344 kb on + strand at 56.345 kb on - strand at 56.350 kb on + strand at 56.350 kb on + strand at 56.350 kb on + strand at 56.350 kb on + strand at 56.350 kb on + strand at 56.350 kb on + strand at 56.351 kb on - strand at 56.351 kb on - strand at 56.351 kb on - strand at 56.351 kb on - strand at 56.351 kb on - strand at 56.417 kb on + strand at 56.418 kb on - strand at 56.418 kb on - strand at 56.418 kb on - strand at 56.471 kb on + strand at 56.471 kb on + strand at 56.472 kb on - strand at 56.849 kb on + strand, within QEN71_RS00265 at 56.850 kb on - strand, within QEN71_RS00265 at 56.870 kb on + strand, within QEN71_RS00265 at 56.870 kb on + strand, within QEN71_RS00265 at 56.870 kb on + strand, within QEN71_RS00265 at 56.870 kb on + strand, within QEN71_RS00265 at 56.870 kb on + strand, within QEN71_RS00265 at 56.871 kb on - strand, within QEN71_RS00265 at 56.871 kb on - strand, within QEN71_RS00265 at 56.871 kb on - strand, within QEN71_RS00265 at 56.871 kb on - strand, within QEN71_RS00265 at 56.871 kb on - strand, within QEN71_RS00265 at 56.871 kb on - strand, within QEN71_RS00265 at 56.871 kb on - strand, within QEN71_RS00265 at 56.881 kb on + strand, within QEN71_RS00265 at 56.881 kb on + strand, within QEN71_RS00265 at 56.881 kb on + strand, within QEN71_RS00265 at 56.881 kb on + strand, within QEN71_RS00265 at 56.881 kb on + strand, within QEN71_RS00265 at 56.882 kb on - strand, within QEN71_RS00265 at 56.882 kb on - strand, within QEN71_RS00265 at 56.983 kb on + strand, within QEN71_RS00265 at 56.983 kb on + strand, within QEN71_RS00265 at 56.983 kb on + strand, within QEN71_RS00265 at 56.983 kb on + strand, within QEN71_RS00265 at 56.984 kb on - strand, within QEN71_RS00265 at 56.984 kb on - strand, within QEN71_RS00265 at 56.984 kb on - strand, within QEN71_RS00265 at 57.022 kb on + strand, within QEN71_RS00265 at 57.092 kb on + strand, within QEN71_RS00265 at 57.092 kb on + strand, within QEN71_RS00265 at 57.093 kb on - strand, within QEN71_RS00265 at 57.093 kb on - strand, within QEN71_RS00265 at 57.093 kb on - strand, within QEN71_RS00265 at 57.104 kb on + strand, within QEN71_RS00265 at 57.104 kb on + strand, within QEN71_RS00265 at 57.105 kb on - strand, within QEN71_RS00265 at 57.105 kb on - strand, within QEN71_RS00265 at 57.105 kb on - strand, within QEN71_RS00265 at 57.137 kb on + strand, within QEN71_RS00265 at 57.137 kb on + strand, within QEN71_RS00265 at 57.149 kb on + strand, within QEN71_RS00265 at 57.149 kb on + strand, within QEN71_RS00265 at 57.150 kb on - strand, within QEN71_RS00265 at 57.150 kb on - strand, within QEN71_RS00265 at 57.150 kb on - strand, within QEN71_RS00265 at 57.150 kb on - strand, within QEN71_RS00265 at 57.270 kb on + strand at 57.270 kb on + strand at 57.270 kb on + strand at 57.270 kb on + strand at 57.297 kb on + strand at 57.297 kb on + strand at 57.297 kb on + strand at 57.297 kb on + strand at 57.298 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Motility_outer_sample_with_outgrowth remove 56,344 + -0.8 56,344 + +0.4 56,345 - +0.3 56,350 + +0.2 56,350 + +1.0 56,350 + +0.1 56,350 + +0.1 56,350 + +0.2 56,350 + -1.5 56,351 - -0.5 56,351 - -0.4 56,351 - -0.2 56,351 - +1.8 56,351 - -0.4 56,417 + +0.0 56,418 - -0.2 56,418 - -0.6 56,418 - -1.0 56,471 + +0.4 56,471 + +0.2 56,472 - -0.5 56,849 + QEN71_RS00265 0.48 -0.5 56,850 - QEN71_RS00265 0.49 +1.4 56,870 + QEN71_RS00265 0.51 +0.9 56,870 + QEN71_RS00265 0.51 -2.4 56,870 + QEN71_RS00265 0.51 +1.5 56,870 + QEN71_RS00265 0.51 +0.0 56,870 + QEN71_RS00265 0.51 -0.4 56,871 - QEN71_RS00265 0.51 -1.2 56,871 - QEN71_RS00265 0.51 -0.8 56,871 - QEN71_RS00265 0.51 -0.2 56,871 - QEN71_RS00265 0.51 +1.6 56,871 - QEN71_RS00265 0.51 +0.1 56,871 - QEN71_RS00265 0.51 +1.0 56,871 - QEN71_RS00265 0.51 -1.8 56,881 + QEN71_RS00265 0.52 +0.3 56,881 + QEN71_RS00265 0.52 -0.7 56,881 + QEN71_RS00265 0.52 +0.1 56,881 + QEN71_RS00265 0.52 +0.1 56,881 + QEN71_RS00265 0.52 +0.5 56,882 - QEN71_RS00265 0.52 -0.7 56,882 - QEN71_RS00265 0.52 +0.5 56,983 + QEN71_RS00265 0.64 -1.8 56,983 + QEN71_RS00265 0.64 -0.6 56,983 + QEN71_RS00265 0.64 -3.0 56,983 + QEN71_RS00265 0.64 -0.5 56,984 - QEN71_RS00265 0.65 +0.3 56,984 - QEN71_RS00265 0.65 -0.5 56,984 - QEN71_RS00265 0.65 -0.2 57,022 + QEN71_RS00265 0.69 +0.3 57,092 + QEN71_RS00265 0.77 -0.3 57,092 + QEN71_RS00265 0.77 -0.4 57,093 - QEN71_RS00265 0.78 +0.8 57,093 - QEN71_RS00265 0.78 -0.3 57,093 - QEN71_RS00265 0.78 -0.5 57,104 + QEN71_RS00265 0.79 -0.4 57,104 + QEN71_RS00265 0.79 -0.9 57,105 - QEN71_RS00265 0.79 +0.9 57,105 - QEN71_RS00265 0.79 +0.6 57,105 - QEN71_RS00265 0.79 -2.2 57,137 + QEN71_RS00265 0.83 +0.2 57,137 + QEN71_RS00265 0.83 +2.0 57,149 + QEN71_RS00265 0.84 -1.7 57,149 + QEN71_RS00265 0.84 -0.4 57,150 - QEN71_RS00265 0.84 -0.3 57,150 - QEN71_RS00265 0.84 +0.8 57,150 - QEN71_RS00265 0.84 +2.1 57,150 - QEN71_RS00265 0.84 +0.2 57,270 + +0.2 57,270 + -0.4 57,270 + +0.3 57,270 + +0.2 57,297 + -1.9 57,297 + -0.8 57,297 + +0.4 57,297 + -0.5 57,298 - +0.1
Or see this region's nucleotide sequence