Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_04052

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 1
4,552,465	-		MIT1002_04050	0.74	-4.1
4,552,692	+		MIT1002_04051	0.15	+0.3
4,552,694	+		MIT1002_04051	0.15	+0.7
4,552,700	-		MIT1002_04051	0.16	+0.3
4,552,700	-		MIT1002_04051	0.16	+1.1
4,552,702	-		MIT1002_04051	0.17	-0.3
4,552,720	+		MIT1002_04051	0.20	+0.5
4,552,720	+		MIT1002_04051	0.20	+2.2
4,552,728	-		MIT1002_04051	0.22	-2.1
4,552,747	-		MIT1002_04051	0.25	+0.5
4,552,751	+		MIT1002_04051	0.26	+0.1
4,552,802	-		MIT1002_04051	0.36	+2.9
4,552,918	+		MIT1002_04051	0.59	-1.1
4,552,933	+		MIT1002_04051	0.62	-0.7
4,552,933	+		MIT1002_04051	0.62	+0.2
4,552,933	+		MIT1002_04051	0.62	+0.7
4,552,933	+		MIT1002_04051	0.62	-0.5
4,552,933	+		MIT1002_04051	0.62	+0.2
4,552,933	+		MIT1002_04051	0.62	+1.4
4,552,941	-		MIT1002_04051	0.64	-2.4
4,552,941	-		MIT1002_04051	0.64	+0.1
4,552,941	-		MIT1002_04051	0.64	+0.3
4,552,941	-		MIT1002_04051	0.64	+1.7
4,552,941	-		MIT1002_04051	0.64	+0.9
4,552,976	+		MIT1002_04051	0.71	+1.5
4,552,977	-		MIT1002_04051	0.71	-0.7
4,553,052	+		MIT1002_04051	0.86	+0.5
4,553,067	-		MIT1002_04051	0.89	-2.5
4,553,070	-		MIT1002_04051	0.89	+0.6
4,553,074	+				-2.5
4,553,074	+				+2.1
4,553,074	+				+1.3
4,553,074	+				-0.5
4,553,074	+				+1.0
4,553,074	+				+0.1
4,553,074	+				-0.6
4,553,082	-				-0.3
4,553,082	-				+0.5
4,553,082	-				-2.2
4,553,087	-				+1.0
4,553,087	-				+0.9
4,553,114	-				+0.7
4,553,264	+				-2.5
4,553,272	-				+0.1
4,553,308	-				+0.5
4,553,381	-		MIT1002_04052	0.17	-1.9
4,553,458	-		MIT1002_04052	0.45	-0.3
4,553,555	-		MIT1002_04052	0.80	-0.3
4,553,638	+				+0.7
4,553,732	+		MIT1002_04053	0.12	-0.6
4,553,732	+		MIT1002_04053	0.12	-0.5
4,553,739	-		MIT1002_04053	0.12	-0.1
4,553,739	-		MIT1002_04053	0.12	+0.7
4,553,740	-		MIT1002_04053	0.13	+0.3
4,553,769	+		MIT1002_04053	0.16	+0.8
4,553,781	+		MIT1002_04053	0.17	+2.5
4,553,854	-		MIT1002_04053	0.25	-1.7
4,553,866	-		MIT1002_04053	0.26	+0.8
4,553,910	-		MIT1002_04053	0.31	-0.8
4,553,966	+		MIT1002_04053	0.38	-0.1
4,553,967	-		MIT1002_04053	0.38	+0.4
4,554,005	-		MIT1002_04053	0.42	+0.2
4,554,005	-		MIT1002_04053	0.42	+0.3
4,554,020	+		MIT1002_04053	0.44	+0.5
4,554,024	+		MIT1002_04053	0.44	-0.1
4,554,024	+		MIT1002_04053	0.44	+0.6
4,554,032	-		MIT1002_04053	0.45	+1.5
4,554,032	-		MIT1002_04053	0.45	-0.2
4,554,134	-		MIT1002_04053	0.56	-0.6
4,554,170	-		MIT1002_04053	0.60	-1.1
4,554,180	+		MIT1002_04053	0.61	-0.0
4,554,198	-		MIT1002_04053	0.63	-0.8
4,554,242	+		MIT1002_04053	0.68	-1.6
4,554,248	+		MIT1002_04053	0.69	-0.5
4,554,256	-		MIT1002_04053	0.70	+1.3
4,554,256	-		MIT1002_04053	0.70	+0.5
4,554,282	+		MIT1002_04053	0.73	-0.6
4,554,282	+		MIT1002_04053	0.73	+0.0
4,554,282	+		MIT1002_04053	0.73	-0.2
4,554,282	+		MIT1002_04053	0.73	-0.7
4,554,282	+		MIT1002_04053	0.73	+0.8
4,554,284	+		MIT1002_04053	0.73	+0.5
4,554,290	-		MIT1002_04053	0.73	-0.2
4,554,290	-		MIT1002_04053	0.73	-2.0
4,554,290	-		MIT1002_04053	0.73	-1.3
4,554,290	-		MIT1002_04053	0.73	-3.5
4,554,290	-		MIT1002_04053	0.73	+0.7
4,554,292	-		MIT1002_04053	0.74	+1.1
4,554,292	-		MIT1002_04053	0.74	+0.5
4,554,292	-		MIT1002_04053	0.74	-0.4
4,554,298	+		MIT1002_04053	0.74	+0.2
4,554,340	+		MIT1002_04053	0.79	-0.5
4,554,391	+		MIT1002_04053	0.85	+0.2
4,554,404	-		MIT1002_04053	0.86	+2.7
4,554,462	-				+0.4
4,554,508	-				+0.1
4,554,536	+				+0.7
4,554,542	-				+1.3
4,554,544	-				+0.9
4,554,544	-				-0.1
4,554,607	-				-0.8