Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03639

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 1
4,065,922	+		MIT1002_03638	0.32	+0.2
4,065,930	+		MIT1002_03638	0.33	+1.6
4,065,966	+		MIT1002_03638	0.36	+0.0
4,065,974	-		MIT1002_03638	0.36	-0.1
4,065,992	+		MIT1002_03638	0.38	-1.3
4,065,992	+		MIT1002_03638	0.38	-0.7
4,065,998	-		MIT1002_03638	0.38	+0.3
4,066,000	-		MIT1002_03638	0.38	+0.7
4,066,007	+		MIT1002_03638	0.39	-1.1
4,066,007	+		MIT1002_03638	0.39	+1.0
4,066,007	+		MIT1002_03638	0.39	+0.3
4,066,007	+		MIT1002_03638	0.39	+0.4
4,066,022	+		MIT1002_03638	0.40	+0.0
4,066,032	+		MIT1002_03638	0.41	-0.4
4,066,032	+		MIT1002_03638	0.41	-1.4
4,066,042	-		MIT1002_03638	0.41	+1.3
4,066,135	-		MIT1002_03638	0.48	-1.2
4,066,242	-		MIT1002_03638	0.56	+0.0
4,066,267	+		MIT1002_03638	0.58	-2.6
4,066,274	-		MIT1002_03638	0.58	-0.1
4,066,308	+		MIT1002_03638	0.61	+0.5
4,066,316	-		MIT1002_03638	0.62	-0.7
4,066,341	-		MIT1002_03638	0.63	-0.1
4,066,390	-		MIT1002_03638	0.67	+0.9
4,066,511	-		MIT1002_03638	0.76	-0.3
4,066,524	-		MIT1002_03638	0.77	-3.8
4,066,557	-		MIT1002_03638	0.79	+3.5
4,066,559	+		MIT1002_03638	0.80	+0.3
4,066,581	+		MIT1002_03638	0.81	+2.5
4,066,589	+		MIT1002_03638	0.82	+1.1
4,066,589	+		MIT1002_03638	0.82	-4.4
4,066,589	+		MIT1002_03638	0.82	-1.6
4,066,589	+		MIT1002_03638	0.82	+0.5
4,066,589	-		MIT1002_03638	0.82	+0.0
4,066,597	-		MIT1002_03638	0.82	-0.4
4,066,603	-		MIT1002_03638	0.83	+0.3
4,066,659	-		MIT1002_03638	0.87	+1.2
4,066,692	+		MIT1002_03638	0.89	+1.0
4,066,701	+				-0.4
4,066,701	+				-0.2
4,066,701	+				+0.1
4,066,709	-				+1.2
4,066,709	-				+0.1
4,066,709	-				-1.9
4,066,735	-				+0.3
4,066,740	-				+1.1
4,066,742	-				+1.1
4,066,781	-				+0.4
4,066,798	-				+0.6
4,066,806	+				+0.5
4,066,806	+				-3.0
4,066,806	+				+0.8
4,066,814	-				-0.9
4,066,814	-				+0.4
4,066,814	-				+0.7
4,066,814	-				+1.5
4,066,814	-				-1.0
4,066,830	+				+1.3
4,066,833	+				-0.4
4,066,836	-				+1.3
4,066,836	-				-0.3
4,066,951	-				+0.0
4,067,058	+				-2.3
4,067,093	-				+1.5
4,067,154	+		MIT1002_03639	0.11	-0.6
4,067,162	-		MIT1002_03639	0.11	-1.0
4,067,186	-		MIT1002_03639	0.12	-0.7
4,067,195	+		MIT1002_03639	0.13	-0.0
4,067,203	-		MIT1002_03639	0.13	+1.0
4,067,203	-		MIT1002_03639	0.13	+1.5
4,067,203	-		MIT1002_03639	0.13	+1.9
4,067,208	+		MIT1002_03639	0.13	-2.2
4,067,210	+		MIT1002_03639	0.13	+1.8
4,067,218	-		MIT1002_03639	0.14	+0.6
4,067,308	-		MIT1002_03639	0.18	+2.3
4,067,315	+		MIT1002_03639	0.18	-2.4
4,067,346	+		MIT1002_03639	0.20	+2.1
4,067,346	+		MIT1002_03639	0.20	+0.1
4,067,351	+		MIT1002_03639	0.20	-0.2
4,067,354	-		MIT1002_03639	0.20	+1.1
4,067,356	+		MIT1002_03639	0.20	+0.1
4,067,364	-		MIT1002_03639	0.20	-0.2
4,067,405	+		MIT1002_03639	0.22	+0.7
4,067,439	-		MIT1002_03639	0.24	+0.9
4,067,456	-		MIT1002_03639	0.25	+0.2
4,067,467	+		MIT1002_03639	0.25	+1.1
4,067,468	+		MIT1002_03639	0.25	-2.2
4,067,476	-		MIT1002_03639	0.25	-2.0
4,067,593	+		MIT1002_03639	0.31	-1.0
4,067,600	+		MIT1002_03639	0.31	+1.4
4,067,600	+		MIT1002_03639	0.31	+1.7
4,067,600	+		MIT1002_03639	0.31	+0.6
4,067,608	-		MIT1002_03639	0.31	-2.1
4,067,608	-		MIT1002_03639	0.31	-0.8
4,067,627	+		MIT1002_03639	0.32	+0.2
4,067,630	-		MIT1002_03639	0.32	+0.3
4,067,630	-		MIT1002_03639	0.32	-2.6
4,067,650	+		MIT1002_03639	0.33	-2.2
4,067,904	+		MIT1002_03639	0.45	+0.7
4,067,912	-		MIT1002_03639	0.45	-0.1
4,067,993	+		MIT1002_03639	0.49	+0.4
4,068,001	-		MIT1002_03639	0.49	+0.5
4,068,005	+		MIT1002_03639	0.49	-0.6
4,068,013	-		MIT1002_03639	0.50	-2.8
4,068,048	+		MIT1002_03639	0.51	-4.3
4,068,062	+		MIT1002_03639	0.52	+2.3
4,068,062	+		MIT1002_03639	0.52	+0.0
4,068,203	+		MIT1002_03639	0.58	-0.4
4,068,247	-		MIT1002_03639	0.60	-1.2
4,068,254	-		MIT1002_03639	0.61	-1.0
4,068,276	+		MIT1002_03639	0.62	+1.4
4,068,379	+		MIT1002_03639	0.66	-4.1
4,068,406	-		MIT1002_03639	0.67	+1.5
4,068,424	-		MIT1002_03639	0.68	-0.5
4,068,686	+		MIT1002_03639	0.80	-1.6
4,068,693	+		MIT1002_03639	0.80	-1.3
4,068,693	+		MIT1002_03639	0.80	-1.4
4,068,737	+		MIT1002_03639	0.82	-3.0
4,068,837	+		MIT1002_03639	0.87	-0.3
4,068,898	+		MIT1002_03639	0.90	+2.8
4,068,951	-				+1.4
4,068,988	+				-0.3
4,068,996	-				+1.1
4,069,007	+				-3.6
4,069,007	-				-0.0
4,069,012	+				-3.4
4,069,086	+				-0.1
4,069,121	-				-3.0
4,069,126	-				+0.1
4,069,128	+				+0.6
4,069,134	+				-0.7
4,069,249	+				+0.8
4,069,257	-				-0.5
4,069,266	+				+2.1
4,069,276	+				+0.1
4,069,276	+				+0.6
4,069,282	+				-0.2
4,069,303	-				+0.7
4,069,326	+				+0.5
4,069,326	+				+1.8
4,069,334	-				-2.4
4,069,347	+				+1.8
4,069,347	+				-0.4
4,069,347	+				+0.2
4,069,347	+				+2.7
4,069,355	-				-1.9
4,069,355	-				-0.5
4,069,355	-				-1.1
4,069,355	-				+1.4
4,069,355	-				+1.3
4,069,407	+				-2.4
4,069,411	+				+1.3
4,069,424	-				-0.4
4,069,476	-		MIT1002_03640	0.10	-1.9
4,069,506	-		MIT1002_03640	0.12	-0.5
4,069,517	-		MIT1002_03640	0.12	-2.8
4,069,575	+		MIT1002_03640	0.15	-1.2
4,069,615	-		MIT1002_03640	0.17	-0.7
4,069,695	-		MIT1002_03640	0.21	-0.1
4,069,731	+		MIT1002_03640	0.22	-0.2
4,069,731	+		MIT1002_03640	0.22	+0.4
4,069,739	-		MIT1002_03640	0.23	-0.2
4,069,739	-		MIT1002_03640	0.23	+0.7
4,069,739	-		MIT1002_03640	0.23	-2.9
4,069,739	-		MIT1002_03640	0.23	-1.1
4,069,751	-		MIT1002_03640	0.23	-3.0
4,069,785	-		MIT1002_03640	0.25	-0.8
4,069,812	-		MIT1002_03640	0.26	-0.5
4,069,850	-		MIT1002_03640	0.28	+0.5
4,069,905	-		MIT1002_03640	0.31	+0.5
4,069,905	-		MIT1002_03640	0.31	+1.6
4,069,933	+		MIT1002_03640	0.32	+0.9
4,069,933	+		MIT1002_03640	0.32	+0.5
4,069,934	+		MIT1002_03640	0.32	+0.8
4,069,963	+		MIT1002_03640	0.33	+1.8
4,069,971	-		MIT1002_03640	0.34	+0.6
4,069,971	-		MIT1002_03640	0.34	+1.3
4,069,971	-		MIT1002_03640	0.34	-0.3
4,069,980	+		MIT1002_03640	0.34	+0.3
4,070,000	+		MIT1002_03640	0.35	+1.0
4,070,007	-		MIT1002_03640	0.35	-1.0
4,070,008	-		MIT1002_03640	0.35	-1.0
4,070,031	-		MIT1002_03640	0.36	+2.0
4,070,055	-		MIT1002_03640	0.38	-3.4
4,070,058	-		MIT1002_03640	0.38	-2.4
4,070,058	-		MIT1002_03640	0.38	-0.7
4,070,088	+		MIT1002_03640	0.39	-3.2
4,070,118	-		MIT1002_03640	0.41	-2.6