Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03346

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 1
3,741,001	+		MIT1002_03345	0.80	+0.6
3,741,001	+		MIT1002_03345	0.80	+1.1
3,741,068	+		MIT1002_03345	0.83	+0.1
3,741,088	+		MIT1002_03345	0.84	+1.8
3,741,088	+		MIT1002_03345	0.84	-1.2
3,741,093	+		MIT1002_03345	0.84	-0.2
3,741,096	-		MIT1002_03345	0.84	-2.2
3,741,173	-		MIT1002_03345	0.87	-0.4
3,741,173	-		MIT1002_03345	0.87	+0.5
3,741,173	-		MIT1002_03345	0.87	-0.3
3,741,274	+				+1.0
3,741,282	-				-1.7
3,741,293	-				+1.2
3,741,698	+				+1.4
3,741,698	+				+1.2
3,741,698	+				-0.8
3,741,698	+				+0.3
3,741,706	-				+1.1
3,741,706	-				+0.7
3,741,706	-				+0.4
3,742,059	-		MIT1002_03346	0.13	-0.7
3,742,279	-		MIT1002_03346	0.50	-1.2
3,742,279	-		MIT1002_03346	0.50	+0.3
3,742,419	+		MIT1002_03346	0.73	-0.2
3,742,419	+		MIT1002_03346	0.73	+0.4
3,742,419	+		MIT1002_03346	0.73	-3.1
3,742,419	+		MIT1002_03346	0.73	+1.1
3,742,419	+		MIT1002_03346	0.73	-0.8
3,742,419	+		MIT1002_03346	0.73	+0.3
3,742,419	+		MIT1002_03346	0.73	+0.5
3,742,419	+		MIT1002_03346	0.73	-1.6
3,742,419	+		MIT1002_03346	0.73	+1.4
3,742,419	+		MIT1002_03346	0.73	+0.2
3,742,419	+		MIT1002_03346	0.73	-1.7
3,742,419	+		MIT1002_03346	0.73	+0.1
3,742,419	+		MIT1002_03346	0.73	+0.1
3,742,419	+		MIT1002_03346	0.73	-1.5
3,742,419	+		MIT1002_03346	0.73	+0.2
3,742,419	+		MIT1002_03346	0.73	+0.9
3,742,419	+		MIT1002_03346	0.73	+1.6
3,742,419	+		MIT1002_03346	0.73	-2.6
3,742,419	+		MIT1002_03346	0.73	-1.8
3,742,419	+		MIT1002_03346	0.73	+0.7
3,742,419	+		MIT1002_03346	0.73	+0.5
3,742,419	+		MIT1002_03346	0.73	-1.6
3,742,419	+		MIT1002_03346	0.73	+1.4
3,742,419	+		MIT1002_03346	0.73	-0.2
3,742,427	-		MIT1002_03346	0.75	-0.2
3,742,427	-		MIT1002_03346	0.75	-0.8
3,742,427	-		MIT1002_03346	0.75	+2.3
3,742,427	-		MIT1002_03346	0.75	+0.5
3,742,427	-		MIT1002_03346	0.75	-1.0
3,742,427	-		MIT1002_03346	0.75	-4.8
3,742,427	-		MIT1002_03346	0.75	+1.3
3,742,427	-		MIT1002_03346	0.75	+0.2
3,742,427	-		MIT1002_03346	0.75	-3.0
3,742,427	-		MIT1002_03346	0.75	-0.1
3,742,427	-		MIT1002_03346	0.75	-1.8
3,742,427	-		MIT1002_03346	0.75	+0.2
3,742,427	-		MIT1002_03346	0.75	+0.9
3,742,427	-		MIT1002_03346	0.75	-2.2
3,742,427	-		MIT1002_03346	0.75	-2.7
3,742,427	-		MIT1002_03346	0.75	-2.2
3,742,427	-		MIT1002_03346	0.75	+0.2
3,742,427	-		MIT1002_03346	0.75	+1.2
3,742,427	-		MIT1002_03346	0.75	+0.4
3,742,427	-		MIT1002_03346	0.75	+1.3
3,742,427	-		MIT1002_03346	0.75	+1.3
3,742,427	-		MIT1002_03346	0.75	-1.0
3,742,427	-		MIT1002_03346	0.75	-2.5
3,742,470	+		MIT1002_03346	0.82	-3.6
3,742,478	-		MIT1002_03346	0.83	+0.9
3,742,478	-		MIT1002_03346	0.83	-2.2
3,742,560	-				-1.8
3,742,628	-				-0.2
3,742,746	+		MIT1002_03347	0.59	+1.3
3,742,754	-		MIT1002_03347	0.64	+2.8
3,742,914	+				-2.6
3,742,914	+				-0.2
3,743,016	+				-0.8
3,743,112	-				-0.2
3,743,124	+				+1.9
3,743,176	+				-0.0
3,743,176	+				+0.3
3,743,184	-				-0.1
3,743,184	-				+0.3
3,743,186	+				-0.3
3,743,194	-				+2.0
3,743,230	+				+0.2
3,743,230	+				-1.4
3,743,279	+				-0.9
3,743,279	+				-1.8
3,743,287	-				+0.8
3,743,368	+		MIT1002_03348	0.13	+1.1
3,743,376	-		MIT1002_03348	0.14	+0.6
3,743,477	-		MIT1002_03348	0.18	+0.6
3,743,479	-		MIT1002_03348	0.18	-1.2
3,743,525	-		MIT1002_03348	0.20	-0.1
3,743,536	-		MIT1002_03348	0.21	-2.0
3,743,558	+		MIT1002_03348	0.22	-0.4
3,743,558	+		MIT1002_03348	0.22	-0.6
3,743,566	-		MIT1002_03348	0.22	-0.6
3,743,566	-		MIT1002_03348	0.22	-2.5
3,743,566	-		MIT1002_03348	0.22	-0.3