Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03336

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 1
3,725,179	+				+0.0
3,725,240	+				-0.3
3,725,279	+				-0.6
3,725,310	-		MIT1002_03334	0.12	+1.0
3,725,319	-		MIT1002_03334	0.14	+1.1
3,725,338	-		MIT1002_03334	0.18	-1.9
3,725,370	+		MIT1002_03334	0.25	-0.7
3,725,494	+		MIT1002_03334	0.53	-0.0
3,725,503	+		MIT1002_03334	0.55	+3.2
3,725,508	+		MIT1002_03334	0.56	+1.1
3,725,533	-		MIT1002_03334	0.61	-1.1
3,725,545	-		MIT1002_03334	0.64	-2.0
3,725,623	+		MIT1002_03334	0.81	+1.6
3,725,689	-				+0.7
3,725,729	+				+0.8
3,725,739	-				+1.2
3,725,830	-		MIT1002_03335	0.32	+0.8
3,725,843	+		MIT1002_03335	0.36	-1.5
3,725,925	+		MIT1002_03335	0.56	-0.6
3,725,925	+		MIT1002_03335	0.56	+0.4
3,725,933	-		MIT1002_03335	0.59	+1.3
3,725,933	-		MIT1002_03335	0.59	-0.0
3,725,933	-		MIT1002_03335	0.59	-0.6
3,725,933	-		MIT1002_03335	0.59	-0.2
3,725,943	+		MIT1002_03335	0.61	+1.9
3,725,943	+		MIT1002_03335	0.61	-2.0
3,725,943	+		MIT1002_03335	0.61	+0.3
3,725,943	+		MIT1002_03335	0.61	-1.2
3,726,107	-				+1.3
3,726,148	+				+0.3
3,726,197	+				-0.1
3,726,199	-				-1.2
3,726,199	-				-0.4
3,726,205	+				+0.5
3,726,263	+				-1.9
3,726,367	+		MIT1002_03336	0.15	-0.0
3,726,367	+		MIT1002_03336	0.15	-1.8
3,726,549	+		MIT1002_03336	0.28	+0.5
3,726,586	+		MIT1002_03336	0.30	+1.0
3,726,586	+		MIT1002_03336	0.30	+3.1
3,726,586	+		MIT1002_03336	0.30	-3.0
3,726,586	+		MIT1002_03336	0.30	+0.9
3,726,594	-		MIT1002_03336	0.31	+1.1
3,726,594	-		MIT1002_03336	0.31	-1.4
3,726,594	-		MIT1002_03336	0.31	-3.5
3,726,594	-		MIT1002_03336	0.31	-1.0
3,726,637	+		MIT1002_03336	0.34	+0.3
3,726,765	-		MIT1002_03336	0.43	-0.8
3,726,795	+		MIT1002_03336	0.45	-0.2
3,726,852	+		MIT1002_03336	0.49	+1.1
3,726,880	+		MIT1002_03336	0.50	-0.6
3,726,880	+		MIT1002_03336	0.50	-1.6
3,726,958	-		MIT1002_03336	0.56	-0.7
3,726,967	-		MIT1002_03336	0.57	-2.1
3,726,980	-		MIT1002_03336	0.57	-1.6
3,726,990	-		MIT1002_03336	0.58	+1.2
3,727,027	-		MIT1002_03336	0.61	+0.3
3,727,060	+		MIT1002_03336	0.63	-0.5
3,727,095	+		MIT1002_03336	0.65	-0.3
3,727,102	-		MIT1002_03336	0.66	-0.4
3,727,110	+		MIT1002_03336	0.66	+0.1
3,727,127	+		MIT1002_03336	0.68	-2.4
3,727,185	+		MIT1002_03336	0.72	-2.1
3,727,268	-		MIT1002_03336	0.77	+1.4
3,727,268	-		MIT1002_03336	0.77	-1.7
3,727,311	+		MIT1002_03336	0.80	+0.4
3,727,319	-		MIT1002_03336	0.81	-0.6
3,727,357	+		MIT1002_03336	0.83	+0.8
3,727,449	-		MIT1002_03336	0.90	-0.5
3,727,502	+				-0.2
3,727,510	+				+0.5
3,727,518	-				-0.1
3,727,518	-				+0.7
3,727,535	-				-0.6
3,727,535	-				-0.3
3,727,545	+				-3.3
3,727,558	+				+0.3
3,727,573	-				-0.7
3,727,608	+				+1.0
3,727,617	-				-1.2
3,727,679	+				-2.8
3,727,689	-		MIT1002_03337	0.12	+2.2
3,727,730	-		MIT1002_03337	0.19	-0.4
3,727,736	-		MIT1002_03337	0.20	-0.1
3,727,791	-		MIT1002_03337	0.30	-3.3
3,727,796	-		MIT1002_03337	0.31	-2.1
3,727,797	-		MIT1002_03337	0.31	+0.8
3,727,806	+		MIT1002_03337	0.33	+0.1
3,727,840	+		MIT1002_03337	0.39	+1.7
3,727,879	-		MIT1002_03337	0.47	-0.8
3,727,902	+		MIT1002_03337	0.51	-0.3
3,727,907	-		MIT1002_03337	0.52	+0.3
3,727,985	+		MIT1002_03337	0.66	-0.4
3,727,994	-		MIT1002_03337	0.68	-1.0
3,728,062	-		MIT1002_03337	0.80	+0.5
3,728,063	-		MIT1002_03337	0.80	+1.1
3,728,085	-		MIT1002_03337	0.85	+0.1
3,728,095	-		MIT1002_03337	0.86	-2.5
3,728,171	-				-0.9
3,728,177	+				+1.0
3,728,180	+				-0.0
3,728,180	+				-0.1
3,728,180	+				-3.0
3,728,180	+				+0.1
3,728,180	+				+2.1
3,728,180	+				+0.5
3,728,180	+				+1.2
3,728,186	-				+1.4
3,728,188	-				+1.0
3,728,188	-				+0.1
3,728,190	+				+1.0
3,728,200	+				-2.1
3,728,322	-				-1.1
3,728,396	-				+1.2
3,728,443	+				-1.6
3,728,561	-				-2.7
3,728,585	-				+0.7