Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03000

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 1
3,340,110	-		MIT1002_02999	0.70	-2.1
3,340,129	-		MIT1002_02999	0.71	+0.8
3,340,155	+		MIT1002_02999	0.73	-0.9
3,340,199	+		MIT1002_02999	0.77	-0.7
3,340,220	+		MIT1002_02999	0.78	-2.2
3,340,227	-		MIT1002_02999	0.79	-1.9
3,340,313	+		MIT1002_02999	0.85	-0.4
3,340,313	+		MIT1002_02999	0.85	+0.6
3,340,321	-		MIT1002_02999	0.86	+0.1
3,340,414	+				-1.1
3,340,456	+				+1.4
3,340,456	+				-3.5
3,340,470	-				-1.5
3,340,736	-				+1.2
3,340,741	-				-0.8
3,340,781	+				-3.1
3,340,877	+				-0.8
3,340,968	-				-0.7
3,340,983	-				+0.2
3,340,983	-				-2.6
3,340,983	-				+0.4
3,341,002	+				-2.7
3,341,043	-		MIT1002_03000	0.13	+0.2
3,341,072	+		MIT1002_03000	0.16	+0.1
3,341,072	+		MIT1002_03000	0.16	-3.6
3,341,080	-		MIT1002_03000	0.16	-3.2
3,341,144	+		MIT1002_03000	0.22	-0.8
3,341,160	+		MIT1002_03000	0.24	-0.3
3,341,160	+		MIT1002_03000	0.24	-4.0
3,341,166	-		MIT1002_03000	0.24	-1.7
3,341,168	-		MIT1002_03000	0.24	-2.4
3,341,202	+		MIT1002_03000	0.28	+0.6
3,341,216	+		MIT1002_03000	0.29	+2.0
3,341,231	-		MIT1002_03000	0.30	-0.2
3,341,371	+		MIT1002_03000	0.43	+0.3
3,341,410	+		MIT1002_03000	0.47	+1.4
3,341,567	+		MIT1002_03000	0.61	-0.4
3,341,567	+		MIT1002_03000	0.61	+0.7
3,341,594	-		MIT1002_03000	0.64	-1.5
3,341,663	+		MIT1002_03000	0.70	+0.1
3,341,710	-		MIT1002_03000	0.75	-0.9
3,341,722	-		MIT1002_03000	0.76	-0.8
3,341,731	+		MIT1002_03000	0.76	+0.0
3,341,749	+		MIT1002_03000	0.78	-3.0
3,341,749	+		MIT1002_03000	0.78	+0.0
3,341,749	+		MIT1002_03000	0.78	-1.9
3,341,749	+		MIT1002_03000	0.78	+0.2
3,341,749	+		MIT1002_03000	0.78	-4.0
3,341,749	+		MIT1002_03000	0.78	+1.2
3,341,749	+		MIT1002_03000	0.78	-0.2
3,341,749	+		MIT1002_03000	0.78	-2.7
3,341,749	+		MIT1002_03000	0.78	-2.2
3,341,757	-		MIT1002_03000	0.79	+0.6
3,341,757	-		MIT1002_03000	0.79	+0.5
3,341,759	+		MIT1002_03000	0.79	+1.0
3,341,767	-		MIT1002_03000	0.80	-0.1
3,341,815	-		MIT1002_03000	0.84	+2.1
3,341,857	+		MIT1002_03000	0.88	-1.9
3,341,857	+		MIT1002_03000	0.88	-0.1
3,341,985	+				-1.7
3,341,985	+				+0.5
3,341,993	-				+0.5
3,341,993	-				+2.2
3,341,993	-				+1.4